rna6512, rna6512 (mRNA) Nannochloropsis gaditana

Overview
Namerna6512
Unique Namerna6512
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length966
Alignment locationCM002468.1:686731..688048 +

Link to JBrowse

Properties
Property NameValue
Producthsf-type dna-binding domain containing protein
Orig transcript idgnl|cribi|Naga_100862g3.6800.mrna
Orig protein idgnl|cribi|Naga_100862g3.6800
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:686731..688048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100862g3gene6292Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6512rna6512-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24178.1cds6496Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6512 ID=rna6512|Name=rna6512|organism=Nannochloropsis gaditana|type=mRNA|length=966bp
ATGCTGAAGCCTGTTGCTGACGCCTTCCTGCTCTTGTCCTCGTCACAGGC
TTGCCGTCATTCGCTTCACAGACGACACGTGCCTTTCACCGCTAAATTGT
CTCGCAGCGACATAAGTGCAAAAGACATCTCGGCCGTAATTTCCATATGC
TTGATGCCTGATCGAGTTCCTCTCGTGCACCGTCACCGCACTCCTTATCA
CTTCCATTACGAAGACGAGGACGAGGAGCGACGAATCCCACCCTCGCAGG
GACAGGAAGGGTCCGATCCCTTCGAGCACACCCACATCGGCAGCTCTTCG
TCCTCGAGCCACTCTGACCGTCCTCCTTCCAGAGGACTCTCGCCTCCATT
AACCATTCTTCGCGCCAAACATCCAGCGGCTGCGGCTCTCCAACACCGTC
CGACCACCACCGTGGCCCACGGGCATCGTTCCCCTTCCCCCACCCCCAAA
TCCGCACCCCCCAGCCTGCCCCCTCCTAAATCGCCTCACGGCAAGAAACC
AGCAACAGGGAATAAACCCTCTCCTCCTCCCCACCTCACCTCCTCCTGGC
CATGGGTTTTGTTTGGCTCCCTCACATTGACCATCAACGCCGGGTACATC
AATAGCATCACCCTGCACAATTTGCATGGAATCCCTTCGGCGCACGTTAC
CGGCATCGTTGCCCGGGCCTCCAACTTGTTTGCAGAAGCGGATTGGTCCC
GCATGTCGCTTTACGTGGTGGCGTACTGTTGCTTTGTCTCTGGGGCTTGC
ATGGGGGGCCTGCTCATCTCGCACGAAACCTTCTACCTGGGACGGAACTA
CGCGCGAGCCCTCTTCCTGACCGCGGCCATTCAAGGCGTCGCCCTCGTGA
TTGAAAGCCACTGGGACCACTCTGTCTACTTCATTTACGCCTGCTGCCTG
GCCATGGGTTTGCAGAACTCCCTCACGAGCAAATACAGGGGCGGAGCGAG
GAGTGGTGGAAGGTGA
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protein sequence of rna6512

>rna6512-protein ID=rna6512-protein|Name=rna6512|organism=Nannochloropsis gaditana|type=polypeptide|length=232bp
MPPVKLEGRVTRSSSNASTGINEDDCGPSTETSIDNFQGGRRQPSVPALL
PTRVSSRTARNALTSQSRNSVYQYEHPGGQAVLNAVVKVDDESSVATNSS
FTSTGASARRGGGGGGGGSAKKATIPGFLTKTYEIFSSAEHKDLCGWGAR
GDTIVIKRVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEF
RHEFFRQGRPDLLPLIKRKAMRASTRARGVRP
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mRNA from alignment at CM002468.1:686731..688048+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6512 ID=rna6512|Name=rna6512|organism=Nannochloropsis gaditana|type=mRNA|length=1318bp|location=Sequence derived from alignment at CM002468.1:686731..688048+ (Nannochloropsis gaditana)
ATGCCTCCAGTGAAATTGGAGGGCCGGGTGACGCGTAGCAGTAGCAACGC
CAGCACAGGTATCAACGAAGACGACTGTGGACCCAGTACCGAAACTAGTA
TTGACAATTTTCAAGGGGGAAGACGTCAGCCTAGTGTGCCAGCCCTGCTT
CCCACGAGGGTCTCGTCGCGCACGGCTCGCAACGCCCTGACAAGCCAGAG
CAGGAACAGTGTGTATCAATACGAACACCCAGGGGGACAAGCAGTCTTGA
ATGCGGTGGTGAAAGTCGATGACGAAAGTTCTGTGGCGACCaattcctcc
ttcacttcgACCGGCGCCAGCgcgcggcgggggggagggggaggaggtgg
cgggagcGCCAAAAAAGCCACGATTCCGGGATTTTTGACGAAGACCTACG
AGATATTTTCGAGTGCAGAGCACAAGGATTTGTGCGGgtggggggcgagg
ggggacaCAATTGTGATCAAGAGGGTACCAGAGTTCGCCGCGCGGGTCCT
Gccaaggtgagggagggatggagggagggatcgagggagggcaggaagag
acacagaagggagaggtcgaCGAGCACAGGGGGTGAATTTGAAGAGTGGG
CCTGTCTGGTTACCACCGGTTCTTATGCGGGAAGACAAGTCCGCTGTTCC
CCCTTGAACGGAAGGCGGGAAGTGCCTCGACGGCGTTTTCTgacgtcccg
ccctcccctgcccccccgtcAATCCTGCCGGCCGCACCCATCCAGGTATT
TCAAACATTCAAATTTCCAGTCCTTTGTCCGCCAGCTCAACATGTACGAC
TTCCACAAAACGGTCCAAGACCCGTCGCACGGTGAATTTCGGCACGAGTT
CTTCCGACAAGGACGGCCGGATTTGCTCCCGTTGATTAAACGGAAAGTCT
CCCAGTCCTTGCCGAGTGGCACCGGGACAGACCATCACCACGCCcgcccg
cctttccccacGGAGCTTTTGCACCAACAAGAGGAGTCGGCGcaggacat
ggacgaggcacgaggagggccgggggaggcggggggggaatgtgGGTCGG
GCGAAGAtatctctccttcccacgcgTCGTTGGATCCTTTTCCGAGCAAA
CGCTGGCAGAAACGGCTGGAAATGCATGTTCAGGAGACGCGGGAGCAGGT
GCGGCTGCTGGTGCAGGAAAACCAGCTGTTGTGGCGACAGGGACAGGAGC
ACCGGGCATGCCTGGGAGTTATGCATCGGGTCAACGCGGGAATCTTGAAG
ATTCTCTCGGAGCTTCCCCTTGCCAGGCTATGCGCGCCAGCACCAGGGCC
AGAGGCGTCCGACCCTGA
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Coding sequence (CDS) from alignment at CM002468.1:686731..688048+

>rna6512 ID=rna6512|Name=rna6512|organism=Nannochloropsis gaditana|type=CDS|length=2097bp|location=Sequence derived from alignment at CM002468.1:686731..688048+ (Nannochloropsis gaditana)
ATGCCTCCAGTGAAATTGGAGGGCCGGGTGACGCGTAGCAGTAGCAACGC
CAGCACAGGTATCAACGAAGACGACTGTGGACCCAGTACCGAAACTAGTA
TTGACAATTTTCAAGGGGGAAGACGTCAGCCTAGTGTGCCAGCCCTGCTT
CCCACGAGGGTCTCGTCGCGCACGGCTCGCAACGCCCTGACAAGCCAGAG
CAGGAACAGTGTGTATCAATACGAACACCCAGGGGGACAAGCAGTCTTGA
ATGCGGTGGTGAAAGTCGATGACGAAAGTTCTGTGGCGACCaattcctcc
ttcacttcgACCGGCGCCAGCgcgcggcgggggggagggggaggaggtgg
cgggagcGCCAAAAAAGCCACGATTCCGGGATTTTTGACGAAGACCTACG
AGATATTTTCGAGTGCAGAGCACAAGGATTTGTGCGGgtggggggcgagg
ggggacaCAATTGTGATCAAGAGGGTACCAGAGTTCGCCGCGCGGGTCCT
GccaagGTATTTCAAACATTCAAATTTCCAGTCCTTTGTCCGCCAGCTCA
ACATGTACGACTTCCACAAAACGGTCCAAGACCCGTCGCACGGTGAATTT
CGGCACGAGTTCTTCCGACAAGGACGGCCGGATTTGCTCCCGTTGATTAA
ACGGAAAGCTATGCGCGCCAGCACCAGGGCCAGAGGCGTCCGACCCTGAA
TGCCTCCAGTGAAATTGGAGGGCCGGGTGACGCGTAGCAGTAGCAACGCC
AGCACAGGTATCAACGAAGACGACTGTGGACCCAGTACCGAAACTAGTAT
TGACAATTTTCAAGGGGGAAGACGTCAGCCTAGTGTGCCAGCCCTGCTTC
CCACGAGGGTCTCGTCGCGCACGGCTCGCAACGCCCTGACAAGCCAGAGC
AGGAACAGTGTGTATCAATACGAACACCCAGGGGGACAAGCAGTCTTGAA
TGCGGTGGTGAAAGTCGATGACGAAAGTTCTGTGGCGACCaattcctcct
tcacttcgACCGGCGCCAGCgcgcggcgggggggagggggaggaggtggc
gggagcGCCAAAAAAGCCACGATTCCGGGATTTTTGACGAAGACCTACGA
GATATTTTCGAGTGCAGAGCACAAGGATTTGTGCGGgtggggggcgaggg
gggacaCAATTGTGATCAAGAGGGTACCAGAGTTCGCCGCGCGGGTCCTG
ccaagGTATTTCAAACATTCAAATTTCCAGTCCTTTGTCCGCCAGCTCAA
CATGTACGACTTCCACAAAACGGTCCAAGACCCGTCGCACGGTGAATTTC
GGCACGAGTTCTTCCGACAAGGACGGCCGGATTTGCTCCCGTTGATTAAA
CGGAAAGCTATGCGCGCCAGCACCAGGGCCAGAGGCGTCCGACCCTGAAT
GCCTCCAGTGAAATTGGAGGGCCGGGTGACGCGTAGCAGTAGCAACGCCA
GCACAGGTATCAACGAAGACGACTGTGGACCCAGTACCGAAACTAGTATT
GACAATTTTCAAGGGGGAAGACGTCAGCCTAGTGTGCCAGCCCTGCTTCC
CACGAGGGTCTCGTCGCGCACGGCTCGCAACGCCCTGACAAGCCAGAGCA
GGAACAGTGTGTATCAATACGAACACCCAGGGGGACAAGCAGTCTTGAAT
GCGGTGGTGAAAGTCGATGACGAAAGTTCTGTGGCGACCaattcctcctt
cacttcgACCGGCGCCAGCgcgcggcgggggggagggggaggaggtggcg
ggagcGCCAAAAAAGCCACGATTCCGGGATTTTTGACGAAGACCTACGAG
ATATTTTCGAGTGCAGAGCACAAGGATTTGTGCGGgtggggggcgagggg
ggacaCAATTGTGATCAAGAGGGTACCAGAGTTCGCCGCGCGGGTCCTGc
caagGTATTTCAAACATTCAAATTTCCAGTCCTTTGTCCGCCAGCTCAAC
ATGTACGACTTCCACAAAACGGTCCAAGACCCGTCGCACGGTGAATTTCG
GCACGAGTTCTTCCGACAAGGACGGCCGGATTTGCTCCCGTTGATTAAAC
GGAAAGCTATGCGCGCCAGCACCAGGGCCAGAGGCGTCCGACCCTGA
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Synonyms
Publications