EWM24178.1, cds6496 (CDS) Nannochloropsis gaditana

Overview
NameEWM24178.1
Unique Namecds6496
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:686731..687236 +
Alignment locationCM002468.1:687476..687626 +
Alignment locationCM002468.1:688007..688048 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24178.1
Producthsf-type dna-binding domain containing protein
Orig transcript idgnl|cribi|Naga_100862g3.6800.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:686731..687236 +
CM002468.1supercontigCM002468.1:687476..687626 +
CM002468.1supercontigCM002468.1:688007..688048 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR027725HSF_fam
IPR011991WHTH_DNA-bd_dom
IPR000232HSF_DNA-bd
Homology
[Close]
BLAST of EWM24178.1 vs. NCBI_GenBank
Match: gi|585105558|gb|EWM24178.1| (hsf-type dna-binding domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 478.404 bits (1230), Expect = 8.208e-171
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0 
Query:    1 MPPVKLEGRVTRSSSNASTGINEDDCGPSTETSIDNFQGGRRQPSVPALLPTRVSSRTARNALTSQSRNSVYQYEHPGGQAVLNAVVKVDDESSVATNSSFTSTGASARRGGGGGGGGSAKKATIPGFLTKTYEIFSSAEHKDLCGWGARGDTIVIKRVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFRQGRPDLLPLIKRKAMRASTRARGVRP 232
            MPPVKLEGRVTRSSSNASTGINEDDCGPSTETSIDNFQGGRRQPSVPALLPTRVSSRTARNALTSQSRNSVYQYEHPGGQAVLNAVVKVDDESSVATNSSFTSTGASARRGGGGGGGGSAKKATIPGFLTKTYEIFSSAEHKDLCGWGARGDTIVIKRVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFRQGRPDLLPLIKRKAMRASTRARGVRP
Sbjct:    1 MPPVKLEGRVTRSSSNASTGINEDDCGPSTETSIDNFQGGRRQPSVPALLPTRVSSRTARNALTSQSRNSVYQYEHPGGQAVLNAVVKVDDESSVATNSSFTSTGASARRGGGGGGGGSAKKATIPGFLTKTYEIFSSAEHKDLCGWGARGDTIVIKRVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFRQGRPDLLPLIKRKAMRASTRARGVRP 232
[Close]
BLAST of EWM24178.1 vs. NCBI_GenBank
Match: gi|635371043|emb|CCI40699.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 143.665 bits (361), Expect = 3.656e-36
Identity = 71/159 (44.65%), Postives = 90/159 (56.60%), Query Frame = 0 
Query:   73 QYEHPGGQAV---------LNAVVKVDDESSVA--TNSSFTSTGASARRGGGGGGGGSAKKATIPGFLTKTYEIFSSAEHKDLCGWGARGDTIVIKRVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFRQGRPDLLPLIKRKA 220
            + EHP  Q +         L      D E  +A    SS   T  S           + K   +P FL+KT+EIF+  E  D+CGW A GDTI+++ +  F A VLPR+FKH NF SFVRQLN+Y FHKTV D    EF+H +F++ RPDLLPLIKRK 
Sbjct:   37 KLEHPNTQEIDKSTSTQIKLEEACTGDGEKIIAPSNTSSPYYTPNSTVLNNASALPVNGKHVMLPAFLSKTFEIFNLPEFTDMCGWNATGDTIIVRHLEAFVATVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRLEFQHPYFKRNRPDLLPLIKRKV 195
[Close]
BLAST of EWM24178.1 vs. NCBI_GenBank
Match: gi|635371038|emb|CCI40694.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 143.665 bits (361), Expect = 3.689e-36
Identity = 71/159 (44.65%), Postives = 90/159 (56.60%), Query Frame = 0 
Query:   73 QYEHPGGQAV---------LNAVVKVDDESSVA--TNSSFTSTGASARRGGGGGGGGSAKKATIPGFLTKTYEIFSSAEHKDLCGWGARGDTIVIKRVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFRQGRPDLLPLIKRKA 220
            + EHP  Q +         L      D E  +A    SS   T  S           + K   +P FL+KT+EIF+  E  D+CGW A GDTI+++ +  F A VLPR+FKH NF SFVRQLN+Y FHKTV D    EF+H +F++ RPDLLPLIKRK 
Sbjct:   38 KLEHPNTQEIDKSTSTQIKLEEACTGDGEKIIAPSNTSSPYYTPNSTVLNNASALPVNGKHVMLPAFLSKTFEIFNLPEFTDMCGWNATGDTIIVRHLEAFVATVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRLEFQHPYFKRNRPDLLPLIKRKV 196
[Close]
BLAST of EWM24178.1 vs. NCBI_GenBank
Match: gi|635371041|emb|CCI40697.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 143.665 bits (361), Expect = 3.806e-36
Identity = 71/159 (44.65%), Postives = 90/159 (56.60%), Query Frame = 0 
Query:   73 QYEHPGGQAV---------LNAVVKVDDESSVA--TNSSFTSTGASARRGGGGGGGGSAKKATIPGFLTKTYEIFSSAEHKDLCGWGARGDTIVIKRVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFRQGRPDLLPLIKRKA 220
            + EHP  Q +         L      D E  +A    SS   T  S           + K   +P FL+KT+EIF+  E  D+CGW A GDTI+++ +  F A VLPR+FKH NF SFVRQLN+Y FHKTV D    EF+H +F++ RPDLLPLIKRK 
Sbjct:   37 KLEHPNTQEIDKSTSTQIKLEEACTGDGEKIIAPSNTSSPYYTPNSTVLNNASALPVNGKHVMLPAFLSKTFEIFNLPEFTDMCGWNATGDTIIVRHLEAFVATVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRLEFQHPYFKRNRPDLLPLIKRKV 195
[Close]
BLAST of EWM24178.1 vs. NCBI_GenBank
Match: gi|635371036|emb|CCI40692.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 143.665 bits (361), Expect = 3.866e-36
Identity = 71/159 (44.65%), Postives = 90/159 (56.60%), Query Frame = 0 
Query:   73 QYEHPGGQAV---------LNAVVKVDDESSVA--TNSSFTSTGASARRGGGGGGGGSAKKATIPGFLTKTYEIFSSAEHKDLCGWGARGDTIVIKRVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFRQGRPDLLPLIKRKA 220
            + EHP  Q +         L      D E  +A    SS   T  S           + K   +P FL+KT+EIF+  E  D+CGW A GDTI+++ +  F A VLPR+FKH NF SFVRQLN+Y FHKTV D    EF+H +F++ RPDLLPLIKRK 
Sbjct:   38 KLEHPNTQEIDKSTSTQIKLEEACTGDGEKIIAPSNTSSPYYTPNSTVLNNASALPVNGKHVMLPAFLSKTFEIFNLPEFTDMCGWNATGDTIIVRHLEAFVATVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRLEFQHPYFKRNRPDLLPLIKRKV 196
[Close]
BLAST of EWM24178.1 vs. NCBI_GenBank
Match: gi|635371037|emb|CCI40693.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 143.665 bits (361), Expect = 3.941e-36
Identity = 71/159 (44.65%), Postives = 90/159 (56.60%), Query Frame = 0 
Query:   73 QYEHPGGQAV---------LNAVVKVDDESSVA--TNSSFTSTGASARRGGGGGGGGSAKKATIPGFLTKTYEIFSSAEHKDLCGWGARGDTIVIKRVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFRQGRPDLLPLIKRKA 220
            + EHP  Q +         L      D E  +A    SS   T  S           + K   +P FL+KT+EIF+  E  D+CGW A GDTI+++ +  F A VLPR+FKH NF SFVRQLN+Y FHKTV D    EF+H +F++ RPDLLPLIKRK 
Sbjct:   38 KLEHPNTQEIDKSTSTQIKLEEACTGDGEKIIAPSNTSSPYYTPNSTVLNNASALPVNGKHVMLPAFLSKTFEIFNLPEFTDMCGWNATGDTIIVRHLEAFVATVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRLEFQHPYFKRNRPDLLPLIKRKV 196
[Close]
BLAST of EWM24178.1 vs. NCBI_GenBank
Match: gi|635371039|emb|CCI40695.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 143.665 bits (361), Expect = 3.961e-36
Identity = 71/159 (44.65%), Postives = 90/159 (56.60%), Query Frame = 0 
Query:   73 QYEHPGGQAV---------LNAVVKVDDESSVA--TNSSFTSTGASARRGGGGGGGGSAKKATIPGFLTKTYEIFSSAEHKDLCGWGARGDTIVIKRVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFRQGRPDLLPLIKRKA 220
            + EHP  Q +         L      D E  +A    SS   T  S           + K   +P FL+KT+EIF+  E  D+CGW A GDTI+++ +  F A VLPR+FKH NF SFVRQLN+Y FHKTV D    EF+H +F++ RPDLLPLIKRK 
Sbjct:   38 KLEHPNTQEIDKSTSTQIKLEEACTGDGEKIIAPSNTSSPYYTPNSTVLNNASALPVNGKHVMLPAFLSKTFEIFNLPEFTDMCGWNATGDTIIVRHLEAFVATVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRLEFQHPYFKRNRPDLLPLIKRKV 196
[Close]
BLAST of EWM24178.1 vs. NCBI_GenBank
Match: gi|635371040|emb|CCI40696.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 143.665 bits (361), Expect = 4.111e-36
Identity = 71/159 (44.65%), Postives = 90/159 (56.60%), Query Frame = 0 
Query:   73 QYEHPGGQAV---------LNAVVKVDDESSVA--TNSSFTSTGASARRGGGGGGGGSAKKATIPGFLTKTYEIFSSAEHKDLCGWGARGDTIVIKRVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFRQGRPDLLPLIKRKA 220
            + EHP  Q +         L      D E  +A    SS   T  S           + K   +P FL+KT+EIF+  E  D+CGW A GDTI+++ +  F A VLPR+FKH NF SFVRQLN+Y FHKTV D    EF+H +F++ RPDLLPLIKRK 
Sbjct:   37 KLEHPNTQEIDKSTSTQIKLEEACTGDGEKIIAPSNTSSPYYTPNSTVLNNASALPVNGKHVMLPAFLSKTFEIFNLPEFTDMCGWNATGDTIIVRHLEAFVATVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRLEFQHPYFKRNRPDLLPLIKRKV 195
[Close]
BLAST of EWM24178.1 vs. NCBI_GenBank
Match: gi|635371042|emb|CCI40698.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 143.665 bits (361), Expect = 4.192e-36
Identity = 71/159 (44.65%), Postives = 90/159 (56.60%), Query Frame = 0 
Query:   73 QYEHPGGQAV---------LNAVVKVDDESSVA--TNSSFTSTGASARRGGGGGGGGSAKKATIPGFLTKTYEIFSSAEHKDLCGWGARGDTIVIKRVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFRQGRPDLLPLIKRKA 220
            + EHP  Q +         L      D E  +A    SS   T  S           + K   +P FL+KT+EIF+  E  D+CGW A GDTI+++ +  F A VLPR+FKH NF SFVRQLN+Y FHKTV D    EF+H +F++ RPDLLPLIKRK 
Sbjct:   37 KLEHPNTQEIDKSTSTQIKLEEACTGDGEKIIAPSNTSSPYYTPNSTVLNNASALPVNGKHVMLPAFLSKTFEIFNLPEFTDMCGWNATGDTIIVRHLEAFVATVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRLEFQHPYFKRNRPDLLPLIKRKV 195
[Close]
BLAST of EWM24178.1 vs. NCBI_GenBank
Match: gi|635371045|emb|CCI40701.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 140.198 bits (352), Expect = 2.674e-35
Identity = 58/96 (60.42%), Postives = 73/96 (76.04%), Query Frame = 0 
Query:  125 IPGFLTKTYEIFSSAEHKDLCGWGARGDTIVIKRVPEFAARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFRQGRPDLLPLIKRKA 220
            +P FL+KT+EIF+  E  D+CGW A GDTI+++ +  F A VLPR+FKH NF SFVRQLN+Y FHKTV D    EF+H +F++ RPDLLPLIKRK 
Sbjct:    2 LPAFLSKTFEIFNLPEFTDMCGWNATGDTIIVRHLEAFVATVLPRFFKHRNFPSFVRQLNLYGFHKTVLDSKRLEFQHPYFKRNRPDLLPLIKRKV 97
The following BLAST results are available for this feature:
BLAST of EWM24178.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105558|gb|EWM24178.1|8.208e-171100.00hsf-type dna-binding domain containing protein [Na... [more]
gi|635371043|emb|CCI40699.1|3.656e-3644.65unnamed protein product [Albugo candida][more]
gi|635371038|emb|CCI40694.1|3.689e-3644.65unnamed protein product [Albugo candida][more]
gi|635371041|emb|CCI40697.1|3.806e-3644.65unnamed protein product [Albugo candida][more]
gi|635371036|emb|CCI40692.1|3.866e-3644.65unnamed protein product [Albugo candida][more]
gi|635371037|emb|CCI40693.1|3.941e-3644.65unnamed protein product [Albugo candida][more]
gi|635371039|emb|CCI40695.1|3.961e-3644.65unnamed protein product [Albugo candida][more]
gi|635371040|emb|CCI40696.1|4.111e-3644.65unnamed protein product [Albugo candida][more]
gi|635371042|emb|CCI40698.1|4.192e-3644.65unnamed protein product [Albugo candida][more]
gi|635371045|emb|CCI40701.1|2.674e-3560.42unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6512rna6512Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications