rna6511, rna6511 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6511
Unique Name	rna6511
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1550
Alignment location	CM002468.1:683610..685002 -

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Properties


Property Name	Value
Product	Protein of unknown function DUF1275
Orig transcript id	gnl\|cribi\|Naga_100862g1.6799.mrna
Orig protein id	gnl\|cribi\|Naga_100862g1.6799
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:683610..685002 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100862g1	gene6291	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6511	rna6511-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24177.1	cds6495	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:683610..685002-
coding sequence from alignment at CM002468.1:683610..685002-

mRNA sequence

>rna6511 ID=rna6511|Name=rna6511|organism=Nannochloropsis gaditana|type=mRNA|length=1550bp
TCCCTCCCTCGCTTCCTCCCTCCCTCCCTCCAATCCACTGGCCGCTGGAC
CGGCATCCGAGCATCTAGTGAGACCCTGAGCCACGCCCTTCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCTTCAGGTGCTGGAGCACGGGGCCCTCCTCGT
GAACGTGTGTCTAACGACCACCTGTGCCCTGATCCACACTCTCTACCTTG
CCTACCACGAGCGCTTGTCCCCGCTCTCGATCCTGGAATCTCGCAAGGAC
ATCCGCCTCCACAAGCACCGGGTGGGGCCCTCGCCTCGACACAACACCCC
TCGGTCTCGACCTCGACGGCACTGGGGGAGGAACACGCCCACCAACCGCT
CCCTCCACGCTTTAGACAGGAGTGGTGCGTGGCCCCTCCCTCCCTCCCTG
CCCCTCTTTTTCCTCGTCCCCGAATCCTAGTCTCTTGCCCGTTTTTATCT
TTCCCTTTGTCATTCTTTGCTTTTTTATTTCCTTTTTTTCCCACTCTCTG
TGGCTTCCTCCCTTCCTCCTCTCCCGTCGTAATCTCCGCCGCCGGGGACT
ACTGTACATGCCCCAACCCTCCTCCCCATTTATACCCCTCTTTCATGGTT
CTCTCCCACTTGCCCTCATGTCTTTTTTTCCTCCACCCCTCTCTTTCTCC
CTCTATTCCTCCTTCCCTCCCCCCCTCCTTCCCGCCAGGCCAATCCACGT
CCGGTTGGCGGACCTCACCGAGGGAGGGCGGGAGGGATGGAGCGAGGGAG
GGAGGCTTCGTCCGACAGATATCCTTTGGGCCTGCCAACAAAGGGCGTCC
AGCAGGCATCGAGCTCCTAGATTTGAGCGGGCGTGGGAGGGACGGAGAGA
GGGGGAGGGAGAAGGACATGGGGAACACGCAGGTGAGCTCTCCCGTCTCA
GCGCCCGATTTGGAAATCGTCGTCTCTCGAGAAGGGCAGGACCGAGGGGT
GAAGGAAGGGGGGGAGGAGGAAGGGCTGGGTACGGAAGAGGACGACAATG
AGCTGGAGTTGGCTCCTGAGGATCGGGGAGAATATGATCTGGGCGGATAT
GCGGACGGGGACGTGGCGAAAGAGGTGCAGATGGAGGAGGAAGAGGTGGA
AGCGGCGCTCTTGCGGCATGGGGAGACGGGTCAGGCCGGGGAGGAGGGAG
AGGAGGAGGAGGATGGAGGGGATGAAGTTGAGGAGGAGGAGGAAGGAAAA
CGATGAGGAAAAAGAGTTTGAAAATGTTGCCGGCTTGATGCTGGGAAGGG
AAAGAGAAGAAGAGGTTGCGTTTGTGAATGATCTAAACGATTTGGCTGGC
AGCAGCGAAAGATATTGTACATAAGAAGAGCGAGTCTTTGTGTGAGGAAG
TCATTTACTATGGTGGGCCCGTACGGATTCAAAGGTTGGCCTCATTGTTG
GAGACGCGCAACCTTGTTCCTCGCCCTCCCAAATTCAGGAGTAGTACGTC
AAGGGAAAAGCAAATGTTGTGTACCTTTGCTGATTTTTTTCTTCACGACT
AAATATTTTGTTTTGTAAAGAATCTTGTGAATTTCAGCCATCGACCTTCC

protein sequence of rna6511

>rna6511-protein ID=rna6511-protein|Name=rna6511|organism=Nannochloropsis gaditana|type=polypeptide|length=321bp
MLKPVADAFLLLSSSQACRHSLHRRHVPFTAKLSRSDISAKDISAVISIC
LMPDRVPLVHRHRTPYHFHYEDEDEERRIPPSQGQEGSDPFEHTHIGSSS
SSSHSDRPPSRGLSPPLTILRAKHPAAAALQHRPTTTVAHGHRSPSPTPK
SAPPSLPPPKSPHGKKPATGNKPSPPPHLTSSWPWVLFGSLTLTINAGYI
NSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGAC
MGGLLISHETFYLGRNYARALFLTAAIQGVALVIESHWDHSVYFIYACCL
AMGLQNSLTSKYRGGARSGGR

mRNA from alignment at CM002468.1:683610..685002-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6511 ID=rna6511|Name=rna6511|organism=Nannochloropsis gaditana|type=mRNA|length=1393bp|location=Sequence derived from alignment at CM002468.1:683610..685002- (Nannochloropsis gaditana)
ATGCTGAAGCCTGTTGCTGACGCCTTCCTGCTCTTGTCCTCGTCACAGGC
TTGCCGTCATTCGCTTCACAGACGACACGTGCCTTTCACCGCTAAATTGT
CTCGCAGCGACATAAGTGCAAAAGACATCTCGGCCGTAATTTCCATATGC
TTGATGCCTGATCGAGTTCCTCTCGTGCACCGTCACCGCACTCCTTATCA
CTTCCATTACGAAGACGAGGACGAGGAGCGACGAATCCCACCCTCGCAGG
GACAGGAAGGGTCCGATCCCTTCGAGCACACCCACATCGGCAGCTCTTCG
TCCTCGAGCCACTCTGACCGTCCTCCTTCCAGAGGACTCTCGCCTCCATT
AACCATTCTTCGCGCCAAACATCCAGCGGCTGCGGCTCTCCAACACCGTC
CGACCACCACCGTGGCCCACGGGCATCGTTCCCCTTCCCCCACCCCCAAA
TCCGCACCCCCCAGCCTGCCCCCTCCTAAATCGCCTCACGGCAAGAAACC
AGCAACAGGGAATAAACCCTCTCCTCCTCCCCACCTCACCTCCTCCTGGC
CATGGGTTTTGTTTGGCTCCCTCACATTGACCATCAACGCCGGGTACATC
AATAGCATCACCCTGCACAATTTGCATGGAATCCCTTCGGCGCACGTTAC
CGGCATCGTTGCCCGGGCCTCCAACTTGTTTGCAGAAGCGGATTGGTCCC
GCATGTCGCTTTACGTGGTGGCGTACTGTTGCTTTGTCTCTGGGGCTTGC
ATGGGGGGCCTGCTCATCTCGCACGAAACCTTCTACCTGGTAGGAAGCCT
GCCGTCTTTCTCTCTTGATCTCGTACACTTTCGTCTCCTATAAGCGAGTG
CCTGCCTGCCTATTCCTTTTGACCCTGGAAGTTTCCCTTCGAAACCGCGC
GTAAGACTTGTTCTCCCCCCTTCCTCACCCTTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCAGGGACGGAACTACGCGCGAGCCCTCTTCCTGACCGC
GGCCATTCAAGGCGTCGCCCTCGTGATTGAAAGCCACTGGGACCACTCTG
TCTACTTCATTTACGCCTGCTGCCTGGCCATGGGTTTGCAGAACTCCCTC
ACGAGCAAATACAGGTACGCCCTCCCCTTCCCCCCCCTCCCGCCCTCCCT
CCCCCCCTCCCTCGATTATTTTCTCTTTCTACCGTCCTCTCCCTTGTGGC
CGCTTAATTTCCCTCCTTTCAACTTTCCTCAACTCTCTCCCTCTCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCTTCCCCAGCGGCTCCGTTG
TCCGCACCACCCACCTGACAGGCGCGAGCACCGATCTGGGTATCGCCATC
GGGCACATCATGAAGGGGCGGAGCGAGGAGTGGTGGAAGGTGA

Coding sequence (CDS) from alignment at CM002468.1:683610..685002-

>rna6511 ID=rna6511|Name=rna6511|organism=Nannochloropsis gaditana|type=CDS|length=2898bp|location=Sequence derived from alignment at CM002468.1:683610..685002- (Nannochloropsis gaditana)
GGGCGGAGCGAGGAGTGGTGGAAGGTGAGGACGGAACTACGCGCGAGCCC
TCTTCCTGACCGCGGCCATTCAAGGCGTCGCCCTCGTGATTGAAAGCCAC
TGGGACCACTCTGTCTACTTCATTTACGCCTGCTGCCTGGCCATGGGTTT
GCAGAACTCCCTCACGAGCAAATACAGATGCTGAAGCCTGTTGCTGACGC
CTTCCTGCTCTTGTCCTCGTCACAGGCTTGCCGTCATTCGCTTCACAGAC
GACACGTGCCTTTCACCGCTAAATTGTCTCGCAGCGACATAAGTGCAAAA
GACATCTCGGCCGTAATTTCCATATGCTTGATGCCTGATCGAGTTCCTCT
CGTGCACCGTCACCGCACTCCTTATCACTTCCATTACGAAGACGAGGACG
AGGAGCGACGAATCCCACCCTCGCAGGGACAGGAAGGGTCCGATCCCTTC
GAGCACACCCACATCGGCAGCTCTTCGTCCTCGAGCCACTCTGACCGTCC
TCCTTCCAGAGGACTCTCGCCTCCATTAACCATTCTTCGCGCCAAACATC
CAGCGGCTGCGGCTCTCCAACACCGTCCGACCACCACCGTGGCCCACGGG
CATCGTTCCCCTTCCCCCACCCCCAAATCCGCACCCCCCAGCCTGCCCCC
TCCTAAATCGCCTCACGGCAAGAAACCAGCAACAGGGAATAAACCCTCTC
CTCCTCCCCACCTCACCTCCTCCTGGCCATGGGTTTTGTTTGGCTCCCTC
ACATTGACCATCAACGCCGGGTACATCAATAGCATCACCCTGCACAATTT
GCATGGAATCCCTTCGGCGCACGTTACCGGCATCGTTGCCCGGGCCTCCA
ACTTGTTTGCAGAAGCGGATTGGTCCCGCATGTCGCTTTACGTGGTGGCG
TACTGTTGCTTTGTCTCTGGGGCTTGCATGGGGGGCCTGCTCATCTCGCA
CGAAACCTTCTACCTGGGGCGGAGCGAGGAGTGGTGGAAGGTGAGGACGG
AACTACGCGCGAGCCCTCTTCCTGACCGCGGCCATTCAAGGCGTCGCCCT
CGTGATTGAAAGCCACTGGGACCACTCTGTCTACTTCATTTACGCCTGCT
GCCTGGCCATGGGTTTGCAGAACTCCCTCACGAGCAAATACAGATGCTGA
AGCCTGTTGCTGACGCCTTCCTGCTCTTGTCCTCGTCACAGGCTTGCCGT
CATTCGCTTCACAGACGACACGTGCCTTTCACCGCTAAATTGTCTCGCAG
CGACATAAGTGCAAAAGACATCTCGGCCGTAATTTCCATATGCTTGATGC
CTGATCGAGTTCCTCTCGTGCACCGTCACCGCACTCCTTATCACTTCCAT
TACGAAGACGAGGACGAGGAGCGACGAATCCCACCCTCGCAGGGACAGGA
AGGGTCCGATCCCTTCGAGCACACCCACATCGGCAGCTCTTCGTCCTCGA
GCCACTCTGACCGTCCTCCTTCCAGAGGACTCTCGCCTCCATTAACCATT
CTTCGCGCCAAACATCCAGCGGCTGCGGCTCTCCAACACCGTCCGACCAC
CACCGTGGCCCACGGGCATCGTTCCCCTTCCCCCACCCCCAAATCCGCAC
CCCCCAGCCTGCCCCCTCCTAAATCGCCTCACGGCAAGAAACCAGCAACA
GGGAATAAACCCTCTCCTCCTCCCCACCTCACCTCCTCCTGGCCATGGGT
TTTGTTTGGCTCCCTCACATTGACCATCAACGCCGGGTACATCAATAGCA
TCACCCTGCACAATTTGCATGGAATCCCTTCGGCGCACGTTACCGGCATC
GTTGCCCGGGCCTCCAACTTGTTTGCAGAAGCGGATTGGTCCCGCATGTC
GCTTTACGTGGTGGCGTACTGTTGCTTTGTCTCTGGGGCTTGCATGGGGG
GCCTGCTCATCTCGCACGAAACCTTCTACCTGGGGCGGAGCGAGGAGTGG
TGGAAGGTGAGGACGGAACTACGCGCGAGCCCTCTTCCTGACCGCGGCCA
TTCAAGGCGTCGCCCTCGTGATTGAAAGCCACTGGGACCACTCTGTCTAC
TTCATTTACGCCTGCTGCCTGGCCATGGGTTTGCAGAACTCCCTCACGAG
CAAATACAGATGCTGAAGCCTGTTGCTGACGCCTTCCTGCTCTTGTCCTC
GTCACAGGCTTGCCGTCATTCGCTTCACAGACGACACGTGCCTTTCACCG
CTAAATTGTCTCGCAGCGACATAAGTGCAAAAGACATCTCGGCCGTAATT
TCCATATGCTTGATGCCTGATCGAGTTCCTCTCGTGCACCGTCACCGCAC
TCCTTATCACTTCCATTACGAAGACGAGGACGAGGAGCGACGAATCCCAC
CCTCGCAGGGACAGGAAGGGTCCGATCCCTTCGAGCACACCCACATCGGC
AGCTCTTCGTCCTCGAGCCACTCTGACCGTCCTCCTTCCAGAGGACTCTC
GCCTCCATTAACCATTCTTCGCGCCAAACATCCAGCGGCTGCGGCTCTCC
AACACCGTCCGACCACCACCGTGGCCCACGGGCATCGTTCCCCTTCCCCC
ACCCCCAAATCCGCACCCCCCAGCCTGCCCCCTCCTAAATCGCCTCACGG
CAAGAAACCAGCAACAGGGAATAAACCCTCTCCTCCTCCCCACCTCACCT
CCTCCTGGCCATGGGTTTTGTTTGGCTCCCTCACATTGACCATCAACGCC
GGGTACATCAATAGCATCACCCTGCACAATTTGCATGGAATCCCTTCGGC
GCACGTTACCGGCATCGTTGCCCGGGCCTCCAACTTGTTTGCAGAAGCGG
ATTGGTCCCGCATGTCGCTTTACGTGGTGGCGTACTGTTGCTTTGTCTCT
GGGGCTTGCATGGGGGGCCTGCTCATCTCGCACGAAACCTTCTACCTG

Synonyms

Publications