EWM24177.1, cds6495 (CDS) Nannochloropsis gaditana

Overview
NameEWM24177.1
Unique Namecds6495
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:684214..685002 -
Alignment locationCM002468.1:683889..684037 -
Alignment locationCM002468.1:683610..683637 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24177.1
ProductProtein of unknown function DUF1275
Orig transcript idgnl|cribi|Naga_100862g1.6799.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:684214..685002 -
CM002468.1supercontigCM002468.1:683889..684037 -
CM002468.1supercontigCM002468.1:683610..683637 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR010699DUF1275
Homology
BLAST of EWM24177.1 vs. NCBI_GenBank
Match: gi|585105557|gb|EWM24177.1| (Protein of unknown function DUF1275 [Nannochloropsis gaditana])

HSP 1 Score: 654.055 bits (1686), Expect = 0.000e+0
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0
Query:    1 MLKPVADAFLLLSSSQACRHSLHRRHVPFTAKLSRSDISAKDISAVISICLMPDRVPLVHRHRTPYHFHYEDEDEERRIPPSQGQEGSDPFEHTHIGSSSSSSHSDRPPSRGLSPPLTILRAKHPAAAALQHRPTTTVAHGHRSPSPTPKSAPPSLPPPKSPHGKKPATGNKPSPPPHLTSSWPWVLFGSLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVIESHWDHSVYFIYACCLAMGLQNSLTSKYRGGARSGGR 321
            MLKPVADAFLLLSSSQACRHSLHRRHVPFTAKLSRSDISAKDISAVISICLMPDRVPLVHRHRTPYHFHYEDEDEERRIPPSQGQEGSDPFEHTHIGSSSSSSHSDRPPSRGLSPPLTILRAKHPAAAALQHRPTTTVAHGHRSPSPTPKSAPPSLPPPKSPHGKKPATGNKPSPPPHLTSSWPWVLFGSLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVIESHWDHSVYFIYACCLAMGLQNSLTSKYRGGARSGGR
Sbjct:    1 MLKPVADAFLLLSSSQACRHSLHRRHVPFTAKLSRSDISAKDISAVISICLMPDRVPLVHRHRTPYHFHYEDEDEERRIPPSQGQEGSDPFEHTHIGSSSSSSHSDRPPSRGLSPPLTILRAKHPAAAALQHRPTTTVAHGHRSPSPTPKSAPPSLPPPKSPHGKKPATGNKPSPPPHLTSSWPWVLFGSLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVIESHWDHSVYFIYACCLAMGLQNSLTSKYRGGARSGGR 321          
BLAST of EWM24177.1 vs. NCBI_GenBank
Match: gi|585105203|gb|EWM23918.1| (Protein of unknown function DUF1275 [Nannochloropsis gaditana])

HSP 1 Score: 145.591 bits (366), Expect = 6.152e-36
Identity = 77/189 (40.74%), Postives = 111/189 (58.73%), Query Frame = 0
Query:  134 PTTTVAHGHRSPSPTPKSAPPSLPPPKS----PHG--KKPATGNKPSPPPHLTSSWPWVLFGSLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVIESHWDHSVYFIYACCLAMGLQNSLTSKYRGGA 316
            P+  V    ++    P S    +P P S    P G  ++ ++   P   P+    +  +L  S  LTINA +IN ITL+ +  + SAHVTG+VARAS L A      +  Y + +  FV+G+C  G++++ ETFYLGRNY RALFL AA++G+AL+ E  +  S++FI+ C  A GLQN LTSK+ G A
Sbjct:   48 PSPAVVQQKQTEPQNPPSNINDVPCPASKVNPPQGLQRQKSSYKNPGERPY----FKVILTASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNA 232          
BLAST of EWM24177.1 vs. NCBI_GenBank
Match: gi|585106149|gb|EWM24629.1| (hypothetical protein Naga_100117g18 [Nannochloropsis gaditana])

HSP 1 Score: 135.576 bits (340), Expect = 2.958e-32
Identity = 66/135 (48.89%), Postives = 87/135 (64.44%), Query Frame = 0
Query:  186 VLFGSLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVI------ESHWDHSVYFIYACCLAMGLQNSLTSKYRG 314
            +LFGS  L  NA ++N +T  +   + +AHVTG+VARAS   A+  W  + L +  + CF+ G+ +GG  +SHETFYLGR+Y RAL   A +QG ALV+      E H  H  Y+IY C +AMGLQNSLTSKY G
Sbjct:   65 LLFGSFCLCFNASFVNLVTFSSYLKLATAHVTGLVARASQTIADGAWQLVYLPISVFLCFLVGSVVGGYTVSHETFYLGRSYGRALLTIALLQGSALVVNKVHVDEGHVQH--YYIYVCAVAMGLQNSLTSKYSG 197          
BLAST of EWM24177.1 vs. NCBI_GenBank
Match: gi|750445452|ref|WP_040727327.1| (DUF1275 family protein [Thiomicrospira sp. Kp2])

HSP 1 Score: 78.1814 bits (191), Expect = 3.290e-13
Identity = 45/125 (36.00%), Postives = 68/125 (54.40%), Query Frame = 0
Query:  190 SLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVIESHWDHSVYFIYACCLAMGLQNSLTSKYRG 314
            S T+T+ AGYINS  L    GIP + +TG+ +R S+   + DW  ++  ++  C F SGA + GLLI    +    NY  AL + +A+  +A +    +  S   I    +A GLQN+L + YRG
Sbjct:   26 SFTMTLIAGYINSAILIEF-GIPVSQMTGVSSRISDALIDIDWIELTKNLMILCGFFSGAVLSGLLIGQSKYKTTPNYGYALLINSALLTIATIFS--FIQSEISILLAAIACGLQNALVASYRG 147          
BLAST of EWM24177.1 vs. NCBI_GenBank
Match: gi|1032799949|dbj|BAV11731.1| (membrane protein [Moraxella osloensis])

HSP 1 Score: 70.4774 bits (171), Expect = 1.159e-10
Identity = 42/134 (31.34%), Postives = 70/134 (52.24%), Query Frame = 0
Query:  184 PWVLFGSLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVI---ESHWDHSVYFIYACCLAMGLQNSLTSKYRG 314
             W+L+G   L  NAG INS  L     + ++HVTG V   +   AE  + +M++  +    F+SGA + G ++       G+ Y +AL + A++  ++L++   +S W   V+   AC    GLQNS+ + Y G
Sbjct:    7 KWILWGGCVLAFNAGCINSTALVGFTHLSASHVTGNVTLFATALAEQHYQQMAMVCIVLLSFLSGAVISGFVVGSTALKEGKRYGKALLIEASLLIISLILFSYQSFWGQ-VFAAMAC----GLQNSMVATYSG 135          
BLAST of EWM24177.1 vs. NCBI_GenBank
Match: gi|1042197537|ref|WP_065252707.1| (DUF1275 family protein [Moraxella osloensis] >gi|1041969207|gb|OBX58312.1| hypothetical protein A9Z61_02905 [Moraxella osloensis])

HSP 1 Score: 70.4774 bits (171), Expect = 1.329e-10
Identity = 42/134 (31.34%), Postives = 70/134 (52.24%), Query Frame = 0
Query:  184 PWVLFGSLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVI---ESHWDHSVYFIYACCLAMGLQNSLTSKYRG 314
             W+L+G   L  NAG INS  L     + ++HVTG V   +   AE  + +M++  +    F+SGA + G ++       G+ Y +AL + A++  ++L++   +S W   V+   AC    GLQNS+ + Y G
Sbjct:    7 KWILWGGCVLAFNAGCINSTALVGFTHLSASHVTGNVTLFATALAEQHYQQMAMVCIVLLSFLSGAVISGFVVGSTALKEGKRYGKALLIEASLLIISLILFSYQSFWGQ-VFAAMAC----GLQNSMVATYSG 135          
BLAST of EWM24177.1 vs. NCBI_GenBank
Match: gi|257448752|gb|EEV23717.1| (hypothetical protein ENHAE0001_1911 [Enhydrobacter aerosaccus SK60])

HSP 1 Score: 70.4774 bits (171), Expect = 1.410e-10
Identity = 42/134 (31.34%), Postives = 69/134 (51.49%), Query Frame = 0
Query:  184 PWVLFGSLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVI---ESHWDHSVYFIYACCLAMGLQNSLTSKYRG 314
             W+L+G   L  NAG INS  L     + ++HVTG V   +   AE  + +M++  +    F+SGA + G ++       G+ Y  AL + A++  ++L++   +S W   V+   AC    GLQNS+ + Y G
Sbjct:    7 KWILWGGCVLAFNAGCINSTALVGFTHLSASHVTGNVTLFATALAEQHYQQMAMVCIVLLSFLSGAVISGFVVGSTALKEGKRYGNALLIEASLLSISLILFSYQSFWGQ-VFAAMAC----GLQNSMVATYSG 135          
BLAST of EWM24177.1 vs. NCBI_GenBank
Match: gi|907660453|gb|KND21641.1| (membrane protein [Enhydrobacter aerosaccus])

HSP 1 Score: 70.4774 bits (171), Expect = 1.480e-10
Identity = 42/134 (31.34%), Postives = 70/134 (52.24%), Query Frame = 0
Query:  184 PWVLFGSLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVI---ESHWDHSVYFIYACCLAMGLQNSLTSKYRG 314
             W+L+G   L  NAG INS  L     + ++HVTG V   +   AE  + +M++  +    F+SGA + G ++       G+ Y +AL + A++  ++L++   +S W   V+   AC    GLQNS+ + Y G
Sbjct:    7 KWILWGGCVLAFNAGCINSTALVGFTHLSASHVTGNVTLFATALAEQHYQQMAMVCIVLLSFLSGAVISGFVVGSTALKEGKRYGKALLIEASLLIISLILFSYQSFWGQ-VFAAMAC----GLQNSMVATYSG 135          
BLAST of EWM24177.1 vs. NCBI_GenBank
Match: gi|1140928390|ref|WP_076776631.1| (DUF1275 domain-containing protein [Enhydrobacter sp. H5] >gi|1139541867|gb|ONG37655.1| hypothetical protein BKE17_10345 [Enhydrobacter sp. H5])

HSP 1 Score: 70.0922 bits (170), Expect = 2.043e-10
Identity = 43/134 (32.09%), Postives = 69/134 (51.49%), Query Frame = 0
Query:  184 PWVLFGSLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVI---ESHWDHSVYFIYACCLAMGLQNSLTSKYRG 314
             W+L+G   L  NAG INS  L     + ++HVTG V   +   AE  + +M++  +    F+SGA + G ++       G+ Y  AL + A++  V+L++   +S W   V+   AC    GLQNS+ + Y G
Sbjct:    7 KWILWGGCVLAFNAGCINSTALVGFTHLSASHVTGNVTLFATALAEQHYQQMAMVCIVLLSFLSGAVISGFVVGSTALKEGKRYGNALLIEASLLIVSLILFSYQSFWGQ-VFAAMAC----GLQNSMVATYSG 135          
BLAST of EWM24177.1 vs. NCBI_GenBank
Match: gi|1056604639|ref|WP_068035525.1| (DUF1275 family protein [Psychrobacter sp. P11G5] >gi|1002777304|gb|AMN67372.1| hypothetical protein AK825_06315 [Psychrobacter sp. P11G5])

HSP 1 Score: 70.0922 bits (170), Expect = 2.121e-10
Identity = 46/134 (34.33%), Postives = 71/134 (52.99%), Query Frame = 0
Query:  185 WVLFGSLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCC-FVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVIESHW---DHSVYFIYACCLAMGLQNSLTSKYRG 314
            W+L+G   L  +AG +N+  L    G+  +HVTG V+  +   A  D +R  LY+ A    F++GA + G +I   +  LGR Y RAL++ A     AL++ S+W    H      A  +A GLQN++ + Y G
Sbjct:    8 WILWGGAVLAFSAGCVNTSALMGFAGLSVSHVTGNVSLFAAAIAYLD-ARSILYIGALLLSFLAGAILSGFVIGQTSLKLGRRYGRALYIEA-----ALLLLSYWLYQQHDYLGQLAAAMACGLQNAMVATYSG 135          
The following BLAST results are available for this feature:
BLAST of EWM24177.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105557|gb|EWM24177.1|0.000e+0100.00Protein of unknown function DUF1275 [Nannochlorops... [more]
gi|585105203|gb|EWM23918.1|6.152e-3640.74Protein of unknown function DUF1275 [Nannochlorops... [more]
gi|585106149|gb|EWM24629.1|2.958e-3248.89hypothetical protein Naga_100117g18 [Nannochlorops... [more]
gi|750445452|ref|WP_040727327.1|3.290e-1336.00DUF1275 family protein [Thiomicrospira sp. Kp2][more]
gi|1032799949|dbj|BAV11731.1|1.159e-1031.34membrane protein [Moraxella osloensis][more]
gi|1042197537|ref|WP_065252707.1|1.329e-1031.34DUF1275 family protein [Moraxella osloensis] >gi|1... [more]
gi|257448752|gb|EEV23717.1|1.410e-1031.34hypothetical protein ENHAE0001_1911 [Enhydrobacter... [more]
gi|907660453|gb|KND21641.1|1.480e-1031.34membrane protein [Enhydrobacter aerosaccus][more]
gi|1140928390|ref|WP_076776631.1|2.043e-1032.09DUF1275 domain-containing protein [Enhydrobacter s... [more]
gi|1056604639|ref|WP_068035525.1|2.121e-1034.33DUF1275 family protein [Psychrobacter sp. P11G5] >... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6511rna6511Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications