rna6510, rna6510 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6510
Unique Name	rna6510
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2636
Alignment location	CM002468.1:681874..683423 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100552g5.9950.mrna
Orig protein id	gnl\|cribi\|Naga_100552g5.9950
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:681874..683423 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100552g5	gene6290	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24179.1	cds6494	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6510	rna6510-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:681874..683423-
coding sequence from alignment at CM002468.1:681874..683423-

mRNA sequence

>rna6510 ID=rna6510|Name=rna6510|organism=Nannochloropsis gaditana|type=mRNA|length=2636bp
ACGAGCCCTCTCTGTGTTCCGGTTCGTAAACCCTGCATGCTATTAGTTCT
TAACTCGTCCACGAACGGCTTTTCCTCCTCGTACAATTTGTAAGACAGAA
CCTAAAGGTGCTTTACAGAGCGCCAACATACCCCCGGGCACCATACTTGC
ACATCGCGCATGCAAAGCATCTGCCCCCCAGGGCCCTCCCTCCTCGTTGC
TTCCACCTATCAAGGACCGTATTATCAGCACTGAAGAGCACACGCAGGAG
GATGAGGCCATCCGCTCAGGGCCTCATGTTGAAGCAGTTGGGTCGGTAGC
TTTGCTATGTCCGGCAATCAATGTATTGGCGGCGAAAGAGGACGACAGCA
GTTACAGCAGTACCAGCACTTCGCATGAAAAGCATCAGGCTCCAGCACCG
ATCTTGCCCGCACCTCACCACCCCACCGACTCTCCAGCCGCAGCCTCGCC
ATCAAGTTCCCCCACCGCATCCCTCCACCTCACCGCTCCCTCCTTTCCTC
CCTCCGCCCTCCACGTCCCGGCCGCCCCCCCGGGCCTGGCCGAGCTCCTC
GTCGTCTGTAGCATCCTCACCTGGCTCGCTCTCCTCCTCTGGCAAGAGTC
CACGGCATCGCATGGCCACGAAGCCTTCGCCCTCCTCCTCCTTGGCGCGT
GCACCTACCCGAGCCTGGGGCCTTCCCATTTCCGCCCCGCCCTCGACTCG
GGCATGACTCTGGGCCTCACCGGGCTCCCCGCCCTCCTGGCCAGCTGCCA
TCTCCTCCTCCCCCTCGACCCCTTCCTCACTGCCCTCTTCCAAGCCAGCC
TCCTTTGCGCCTTTGGCTTGGCGGTCCGGCACCTGTGTTGGCCCTCCTCT
CTCCCTCTCCTCGCCCGCCCCCTCCTCGTCCTCCTGCCCGCCCTCCTTCC
CGCAATCCTTCCCTGCCCCTCCCCCGCTTTCCTCACGCTTGTCTACGTCC
TCCACGAGACCCTTTCGGCCATCATTGCTCCCCTCCCTCTCGTCAGGGCC
TCCTTTACCAAGGGGGAGGCCGCCATCCTCCTCCAGGCGTTGGCATTGAC
CTACGCAGACATCCTCTCCCTCACTCTCGCCCGAGCAGGGACGGAGCTAT
TCCCCTACCGTGTCACCGACGGCAGCAGCGGCAACGGATGGCTGGAGAGG
GTGGGAGTGGCCAGACTCTACGCCAGCGCCGAGGTGGAGGCTCGTCAACC
CGTCTTCCTCGTCGTTGAGGCGGGCCTCTTAACGGTCGTAACGGCCGGCG
CCGTTGTCGTGCCGTTGTTTTGCCCCGCATTGCTGACGCCGGCGGGCCCA
GGGGGCGGGGGCTCGGAGGACACGACCAGGATGGAGAAGGGGGGCGAGAC
GGCGAAGGATGGGAAGGAGGGGAGGGCCGCAGGGAGAAAGGGCTCGCTCA
AGGGGTTGGAGGGCGGTGGGAAGCCCGTCGCAGGCACGGGCACCGCTCCA
GGCAGTCAGGGCGTGGCCCCTGTTCCTGCCCTCCCTCCCTCCCTCCCCCC
CTCCCTCTCCACCGCCCTCCCCACCCTCGCCTTCCTCTCCCTCTTCGCTG
CCATCCTCCTCCTCCTCCTTTTCCCCTGGCTGACTTTCCTCCTCCCCTCC
CACCCGCACCCCCTCCGCTGGCTTCTCACCTTCCTCCTCTCCAAGCCTTC
CTACCTCCCTCTCCTCGCCCTCTGGTCTCTTACCCTCCTCGCCTTCACCA
GCGCCATCGTCCCTCTCTCCCGTGCTTTCTCCCTCCCCCGAATCCTCACT
CGCAAGGCCTTCCATGCATTGGCCACCTCCCTCTTCGCCCTCCCCGCCCT
CCATCAGCCCCTCTTCCTCTCCCTCGCACACGCCCTCGCCCTTTCCCTCC
TCCTCCTTCTTGAATACCTGCGCCTCGGTCGAGCTTCCCTCCTCCTCGGC
CGTCCGGTCCACCGATACTACCAGCACTTCCTCGACGACCGCGATATGGG
CCCTTTGGTTGTCACCCACCTCTACCTTCTTCTCGCCTGCGCCTTTCCGC
TCTGGCTCTCCTTTCTCCTTCCCCCAAATCGCCCGCCCTCCCTGCCCTTG
GCCGGTATCTTGGTGGTGGGGATGGGCGATGCCGCCGCTGCCACCGTGGG
GACGCTGTGTGGCAAACACCGATGGCCTTGGACCCGCAGGACGCTGGAGG
GTTCGGCGGCCTTCTTTATCGCTACCGGCCTGGGTGTCTTCACTCAGCTG
GGACAGGAAGGAGGGAAGGAGAGAGGGGTGTGGGGATGGGTGGGGGCGGT
GGTGTTGCTGACACTCTTGGAGGCATTCACCGCCCAGATCGATAACTTGG
TCCTTCCTGTGTACGCAGTGGCTCTCTTCAATGTCGCCTGGCACGTCGCC
ACAGGATCAAGGGGGTAGGGTTAAAGTTAGAGGAATGGAGCGGGGGCAAC
ATAATGGTGGAGGTCAGCGGTACAGAAGAGAGGAGAAGAGAAGGTTGATA
CTGAGGGGAGGGGCAAAGGGTGGTATCCGGTGCTGTACATGCCAAAGTAC
CCGTAGCTTGCCGTACAAGTGGCGCATCAGGACCCAAAAGTAACTAATGT
ACCTATGTCTTGAGAGTTGCTTGTAGCACTTAAGCCTTCTGCGCACATGA
TCTACTCTTCATGATAACAAGATACCATGGAGGACT

protein sequence of rna6510

>rna6510-protein ID=rna6510-protein|Name=rna6510|organism=Nannochloropsis gaditana|type=polypeptide|length=401bp
SLPRFLPPSLQSTGRWTGIRASSETLSHALPPSLPPSLPPSGAGARGPPR
ERVSNDHLCPDPHSLPCLPRALVPALDPGISQGHPPPQAPGGALASTQHP
SVSTSTALGEEHAHQPLPPRFRQEWCVAPPSLPAPLFPRPRILVSCPFLS
FPLSFFAFLFPFFPTLCGFLPSSSPVVISAAGDYCTCPNPPPHLYPSFMV
LSHLPSCLFFLHPSLSPSIPPSLPPSFPPGQSTSGWRTSPREGGRDGARE
GGFVRQISFGPANKGRPAGIELLDLSGRGRDGERGREKDMGNTQVSSPVS
APDLEIVVSREGQDRGVKEGGEEEGLGTEEDDNELELAPEDRGEYDLGGY
ADGDVAKEVQMEEEEVEAALLRHGETGQAGEEGEEEEDGGDEVEEEEEGK
R

mRNA from alignment at CM002468.1:681874..683423-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6510 ID=rna6510|Name=rna6510|organism=Nannochloropsis gaditana|type=mRNA|length=1550bp|location=Sequence derived from alignment at CM002468.1:681874..683423- (Nannochloropsis gaditana)
TCCCTCCCTCGCTTCCTCCCTCCCTCCCTCCAATCCACTGGCCGCTGGAC
CGGCATCCGAGCATCTAGTGAGACCCTGAGCCACGCCCTTCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCTTCAGGTGCTGGAGCACGGGGCCCTCCTCGT
GAACGTGTGTCTAACGACCACCTGTGCCCTGATCCACACTCTCTACCTTG
CCTACCACGAGCGCTTGTCCCCGCTCTCGATCCTGGAATCTCGCAAGGAC
ATCCGCCTCCACAAGCACCGGGTGGGGCCCTCGCCTCGACACAACACCCC
TCGGTCTCGACCTCGACGGCACTGGGGGAGGAACACGCCCACCAACCGCT
CCCTCCACGCTTTAGACAGGAGTGGTGCGTGGCCCCTCCCTCCCTCCCTG
CCCCTCTTTTTCCTCGTCCCCGAATCCTAGTCTCTTGCCCGTTTTTATCT
TTCCCTTTGTCATTCTTTGCTTTTTTATTTCCTTTTTTTCCCACTCTCTG
TGGCTTCCTCCCTTCCTCCTCTCCCGTCGTAATCTCCGCCGCCGGGGACT
ACTGTACATGCCCCAACCCTCCTCCCCATTTATACCCCTCTTTCATGGTT
CTCTCCCACTTGCCCTCATGTCTTTTTTTCCTCCACCCCTCTCTTTCTCC
CTCTATTCCTCCTTCCCTCCCCCCCTCCTTCCCGCCAGGCCAATCCACGT
CCGGTTGGCGGACCTCACCGAGGGAGGGCGGGAGGGATGGAGCGAGGGAG
GGAGGCTTCGTCCGACAGATATCCTTTGGGCCTGCCAACAAAGGGCGTCC
AGCAGGCATCGAGCTCCTAGATTTGAGCGGGCGTGGGAGGGACGGAGAGA
GGGGGAGGGAGAAGGACATGGGGAACACGCAGGTGAGCTCTCCCGTCTCA
GCGCCCGATTTGGAAATCGTCGTCTCTCGAGAAGGGCAGGACCGAGGGGT
GAAGGAAGGGGGGGAGGAGGAAGGGCTGGGTACGGAAGAGGACGACAATG
AGCTGGAGTTGGCTCCTGAGGATCGGGGAGAATATGATCTGGGCGGATAT
GCGGACGGGGACGTGGCGAAAGAGGTGCAGATGGAGGAGGAAGAGGTGGA
AGCGGCGCTCTTGCGGCATGGGGAGACGGGTCAGGCCGGGGAGGAGGGAG
AGGAGGAGGAGGATGGAGGGGATGAAGTTGAGGAGGAGGAGGAAGGAAAA
CGATGAGGAAAAAGAGTTTGAAAATGTTGCCGGCTTGATGCTGGGAAGGG
AAAGAGAAGAAGAGGTTGCGTTTGTGAATGATCTAAACGATTTGGCTGGC
AGCAGCGAAAGATATTGTACATAAGAAGAGCGAGTCTTTGTGTGAGGAAG
TCATTTACTATGGTGGGCCCGTACGGATTCAAAGGTTGGCCTCATTGTTG
GAGACGCGCAACCTTGTTCCTCGCCCTCCCAAATTCAGGAGTAGTACGTC
AAGGGAAAAGCAAATGTTGTGTACCTTTGCTGATTTTTTTCTTCACGACT
AAATATTTTGTTTTGTAAAGAATCTTGTGAATTTCAGCCATCGACCTTCC

Coding sequence (CDS) from alignment at CM002468.1:681874..683423-

>rna6510 ID=rna6510|Name=rna6510|organism=Nannochloropsis gaditana|type=CDS|length=1206bp|location=Sequence derived from alignment at CM002468.1:681874..683423- (Nannochloropsis gaditana)
TCCCTCCCTCGCTTCCTCCCTCCCTCCCTCCAATCCACTGGCCGCTGGAC
CGGCATCCGAGCATCTAGTGAGACCCTGAGCCACGCCCTTCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCTTCAGGTGCTGGAGCACGGGGCCCTCCTCGT
GAACGTGTGTCTAACGACCACCTGTGCCCTGATCCACACTCTCTACCTTG
CCTACCACGAGCGCTTGTCCCCGCTCTCGATCCTGGAATCTCGCAAGGAC
ATCCGCCTCCACAAGCACCGGGTGGGGCCCTCGCCTCGACACAACACCCC
TCGGTCTCGACCTCGACGGCACTGGGGGAGGAACACGCCCACCAACCGCT
CCCTCCACGCTTTAGACAGGAGTGGTGCGTGGCCCCTCCCTCCCTCCCTG
CCCCTCTTTTTCCTCGTCCCCGAATCCTAGTCTCTTGCCCGTTTTTATCT
TTCCCTTTGTCATTCTTTGCTTTTTTATTTCCTTTTTTTCCCACTCTCTG
TGGCTTCCTCCCTTCCTCCTCTCCCGTCGTAATCTCCGCCGCCGGGGACT
ACTGTACATGCCCCAACCCTCCTCCCCATTTATACCCCTCTTTCATGGTT
CTCTCCCACTTGCCCTCATGTCTTTTTTTCCTCCACCCCTCTCTTTCTCC
CTCTATTCCTCCTTCCCTCCCCCCCTCCTTCCCGCCAGGCCAATCCACGT
CCGGTTGGCGGACCTCACCGAGGGAGGGCGGGAGGGATGGAGCGAGGGAG
GGAGGCTTCGTCCGACAGATATCCTTTGGGCCTGCCAACAAAGGGCGTCC
AGCAGGCATCGAGCTCCTAGATTTGAGCGGGCGTGGGAGGGACGGAGAGA
GGGGGAGGGAGAAGGACATGGGGAACACGCAGGTGAGCTCTCCCGTCTCA
GCGCCCGATTTGGAAATCGTCGTCTCTCGAGAAGGGCAGGACCGAGGGGT
GAAGGAAGGGGGGGAGGAGGAAGGGCTGGGTACGGAAGAGGACGACAATG
AGCTGGAGTTGGCTCCTGAGGATCGGGGAGAATATGATCTGGGCGGATAT
GCGGACGGGGACGTGGCGAAAGAGGTGCAGATGGAGGAGGAAGAGGTGGA
AGCGGCGCTCTTGCGGCATGGGGAGACGGGTCAGGCCGGGGAGGAGGGAG
AGGAGGAGGAGGATGGAGGGGATGAAGTTGAGGAGGAGGAGGAAGGAAAA
CGATGA

Synonyms

Publications