rna651, rna651 (mRNA) Nannochloropsis gaditana

Overview
Namerna651
Unique Namerna651
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length327
Alignment locationCM002456.1:84980..85698 -

Link to JBrowse

Properties
Property NameValue
ProductSNARE associated Golgi protein
Orig transcript idgnl|cribi|Naga_102208g1.7134.mrna
Orig protein idgnl|cribi|Naga_102208g1.7134
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:84980..85698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102208g1gene624Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30022.1cds651Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna651rna651-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna651 ID=rna651|Name=rna651|organism=Nannochloropsis gaditana|type=mRNA|length=327bp
ATGCGGGCTTCTGCTTTCCAGCTGCGCATCACCATGCAAGAGTTTGTGAG
CGGCTACAAGGAGGGCCGGGACCACAGCGCGGAGGAGATCCAGGCGGCCA
TGACGACGCAGGTCTCGAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAA
GGAAAGAGGGATGGAAGACAGAATGCGACGTGGAAGACTTACTGCGTGTT
TTGCCCTCCCTTTCCTTTTGTAGATACAATCCTTCAAGTCCCTCTTCTTG
GAGGGAGAGTGGACAGCGGAGACGATCGAAGAGTACGTGTCTCCCCCTCT
TCCATTCCTCCCTCCCCCCCTCCCTAA
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protein sequence of rna651

>rna651-protein ID=rna651-protein|Name=rna651|organism=Nannochloropsis gaditana|type=polypeptide|length=164bp
RGRCEAVRACGSCQSNPCRCNLCLCLLSCLRITGALDAVLGEQGLRLNLL
LRLCPVVPYSFLNFAMGLTAARSEDFLLGCLVGMLPAVILLAYVGVAEGG
GKGAVGEILESFGRRHPMETRAALGSGALLLVIAGWIVWRAARSKARAEE
IRKQSVVDSMGWEM
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mRNA from alignment at CM002456.1:84980..85698-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna651 ID=rna651|Name=rna651|organism=Nannochloropsis gaditana|type=mRNA|length=719bp|location=Sequence derived from alignment at CM002456.1:84980..85698- (Nannochloropsis gaditana)
AGGGGGAGGTGCGAGGCCGTACGCGCCTGTGGCTCGTGCCAGTCCAATCC
TTGTCGATGTAATCTATGCCTGTGCCTATTGTCCTGCCTTCGTATCACAG
GGGCCTTGGACGCTGTGTTGGGGGAGCAGGGGCTGCGACTCAACCTCCTC
CTCCGCCTTTGCCCCGTGGTCCCGTATTCCTTTCTGAACTTCGCCATGGG
CTTGACGGCGGCCCGAAGCGAGGATTTCCTCCTCGGTTGCCTCGTCGGCA
TGCTCCCGGCGGTGATTTTGTTGGCCTATGTGGGCGTGGCGGAGGGCGGG
GGGAAGGGAGCGGTGGGCGAGATATTGGAAAGTTTTGGACGACGGCACCC
GATGGAGACACGAGCTGCCTTGGGGTCGGGGGCATTGCTGCTGGTTATTG
CGGGCTGGATTGTATGGCGCGCCGCACGATCAAAAGCCAGGGCGGAGGAG
ATTCGAAAGCAGAGTGTGGTGGATTCGATGGGATGGGAGATGTGACGGGG
GCGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGCCCTGAGGAAA
GTGTACAAAGGAAAGCTGGGCAAGCTCGAAGTAAAGACAGTGTGTTCATC
CCGCCCGCACGCGTGTGAAAGACATCTCTTCCTCATTACTTTCCAGACGG
GAGGGCACCGTCCCTCTCTACGAGCTAGAGACAGCACTCCTTAGGGAACC
ATCGGCTCCTCTCCTCCCC
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Coding sequence (CDS) from alignment at CM002456.1:84980..85698-

>rna651 ID=rna651|Name=rna651|organism=Nannochloropsis gaditana|type=CDS|length=495bp|location=Sequence derived from alignment at CM002456.1:84980..85698- (Nannochloropsis gaditana)
AGGGGGAGGTGCGAGGCCGTACGCGCCTGTGGCTCGTGCCAGTCCAATCC
TTGTCGATGTAATCTATGCCTGTGCCTATTGTCCTGCCTTCGTATCACAG
GGGCCTTGGACGCTGTGTTGGGGGAGCAGGGGCTGCGACTCAACCTCCTC
CTCCGCCTTTGCCCCGTGGTCCCGTATTCCTTTCTGAACTTCGCCATGGG
CTTGACGGCGGCCCGAAGCGAGGATTTCCTCCTCGGTTGCCTCGTCGGCA
TGCTCCCGGCGGTGATTTTGTTGGCCTATGTGGGCGTGGCGGAGGGCGGG
GGGAAGGGAGCGGTGGGCGAGATATTGGAAAGTTTTGGACGACGGCACCC
GATGGAGACACGAGCTGCCTTGGGGTCGGGGGCATTGCTGCTGGTTATTG
CGGGCTGGATTGTATGGCGCGCCGCACGATCAAAAGCCAGGGCGGAGGAG
ATTCGAAAGCAGAGTGTGGTGGATTCGATGGGATGGGAGATGTGA
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Synonyms
Publications