EWM30022.1, cds651 (CDS) Nannochloropsis gaditana

Overview
NameEWM30022.1
Unique Namecds651
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:85204..85698 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30022.1
ProductSNARE associated Golgi protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102208g1.7134.mrna
GbkeyCDS
End range.
End range85698
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:85204..85698 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR015414Tvp38/TMEM64-like
Homology
BLAST of EWM30022.1 vs. NCBI_GenBank
Match: gi|585112646|gb|EWM30022.1| (SNARE associated Golgi protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 323.168 bits (827), Expect = 1.297e-111
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query:    1 RGRCEAVRACGSCQSNPCRCNLCLCLLSCLRITGALDAVLGEQGLRLNLLLRLCPVVPYSFLNFAMGLTAARSEDFLLGCLVGMLPAVILLAYVGVAEGGGKGAVGEILESFGRRHPMETRAALGSGALLLVIAGWIVWRAARSKARAEEIRKQSVVDSMGWEM 164
            RGRCEAVRACGSCQSNPCRCNLCLCLLSCLRITGALDAVLGEQGLRLNLLLRLCPVVPYSFLNFAMGLTAARSEDFLLGCLVGMLPAVILLAYVGVAEGGGKGAVGEILESFGRRHPMETRAALGSGALLLVIAGWIVWRAARSKARAEEIRKQSVVDSMGWEM
Sbjct:    1 RGRCEAVRACGSCQSNPCRCNLCLCLLSCLRITGALDAVLGEQGLRLNLLLRLCPVVPYSFLNFAMGLTAARSEDFLLGCLVGMLPAVILLAYVGVAEGGGKGAVGEILESFGRRHPMETRAALGSGALLLVIAGWIVWRAARSKARAEEIRKQSVVDSMGWEM 164          
BLAST of EWM30022.1 vs. NCBI_GenBank
Match: gi|873231341|emb|CEM08577.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 72.7886 bits (177), Expect = 3.519e-12
Identity = 34/90 (37.78%), Postives = 54/90 (60.00%), Query Frame = 0
Query:   21 NLCLCLLSCLRITGALDAVLGEQGLRLNLLLRLCPVVPYSFLNFAMGLTAARSEDFLLGCLVGMLPAVILLAYVG-----VAEGGGKGAV 105
            +    L++  R+  A+D V   QGL++N LLRL PVVP+S  N+ MG T++R +D+ +G  + ++P   L  Y+G      ++GGG G V
Sbjct:  203 DFVESLVNKFRVIKAIDNVFETQGLKINFLLRLSPVVPFSAFNYVMGGTSSRYKDYAIGT-IAIIPGTALYVYIGAIPAIFSDGGGSGDV 291          
BLAST of EWM30022.1 vs. NCBI_GenBank
Match: gi|1125521936|gb|OLE39612.1| (hypothetical protein AUI36_25700, partial [Cyanobacteria bacterium 13_1_40CM_2_61_4])

HSP 1 Score: 70.8626 bits (172), Expect = 2.306e-11
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 0
Query:   35 ALDAVLGEQGLRLNLLLRLCPVVPYSFLNFAMGLTAARSEDFLLGCLVGMLPAVILLAYVG 95
            A+D  + +QGLR+ LL RL PV P++ LN+A GLT  R  D++LG LVGMLP  I+  Y+G
Sbjct:   93 AIDRAVAQQGLRIVLLTRLSPVFPFNVLNYAFGLTRVRLRDYVLGSLVGMLPGTIMYVYLG 153          
BLAST of EWM30022.1 vs. NCBI_GenBank
Match: gi|1210260802|dbj|BAZ79797.1| (hypothetical protein NIES73_10430 [Sphaerospermopsis kisseleviana NIES-73])

HSP 1 Score: 66.2402 bits (160), Expect = 4.095e-10
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 0
Query:   34 GALDAVLGEQGLRLNLLLRLCPVVPYSFLNFAMGLTAARSEDFLLGCLVGMLPAVILLAYVGVAEGG 100
             A+D  +G +GL++ LL RL P+ P++ LN+A G+TA   +D+ LGC VGM+P  I+  Y+G   G 
Sbjct:  129 AAIDNAVGREGLKIVLLTRLSPIFPFNLLNYAFGVTAVSLKDYFLGC-VGMIPGTIMYVYIGSLAGN 194          
BLAST of EWM30022.1 vs. NCBI_GenBank
Match: gi|873233189|emb|CEM03564.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 66.2402 bits (160), Expect = 8.660e-10
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 0
Query:   26 LLSCLRITGALDAVLGEQGLRLNLLLRLCPVVPYSFLNFAMGLTAARSEDFLLGCLVGMLPAVILLAYVG 95
            L    ++  A+D V   QGL+LN+LLRL PVVP+S  N+ MG T  R  D+ +G L G++P   L  Y+G
Sbjct:  169 LTDKFKVMRAIDKVFETQGLKLNILLRLSPVVPFSAFNYIMGGTRTRYRDYAIGTL-GIIPGTALYVYIG 237          
BLAST of EWM30022.1 vs. NCBI_GenBank
Match: gi|1088316809|gb|OHB68508.1| (hypothetical protein A2Y77_08725 [Planctomycetes bacterium RBG_13_62_9])

HSP 1 Score: 63.929 bits (154), Expect = 1.803e-9
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 0
Query:   35 ALDAVLGEQGLRLNLLLRLCPVVPYSFLNFAMGLTAARSEDFLLGCLVGMLPAVILLAYVG 95
            A+D  +GE+G +L LL RL P+ P+  LN+A GLT     ++L G L+GMLP  IL  Y+G
Sbjct:   85 AIDDAIGERGFQLVLLSRLSPISPFILLNYAFGLTKVSLREYLWGSLIGMLPGTILFVYLG 145          
BLAST of EWM30022.1 vs. NCBI_GenBank
Match: gi|5916171|gb|AAD55929.1|AF148265_1 (hypothetical transmembrane protein [uncultured bacterium AH1])

HSP 1 Score: 64.3142 bits (155), Expect = 1.859e-9
Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 0
Query:   35 ALDAVLGEQGLRLNLLLRLCPVVPYSFLNFAMGLTAARSEDFLLGCLVGMLPAVILLAYVGVAEGGGKGAVGE 107
            ALD V+GE GL+L  LLRL P VP+   N+A+ +T  R  DF +G L G+ P V++ A  G A G    A G 
Sbjct:   93 ALDHVIGEDGLKLVFLLRLSPAVPFVLTNYALSITRVRLRDFFIGTL-GLAPIVVMYAAYGSASGATPNADGS 164          
BLAST of EWM30022.1 vs. NCBI_GenBank
Match: gi|817699212|ref|WP_046661847.1| (TVP38/TMEM64 family protein [Microcystis aeruginosa] >gi|815965045|gb|AKE64190.1| DedA family protein, putative [Microcystis aeruginosa NIES-2549] >gi|1052160118|gb|AOC52586.1| DedA family protein, putative [Microcystis aeruginosa NIES-2481])

HSP 1 Score: 64.3142 bits (155), Expect = 1.969e-9
Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = 0
Query:   35 ALDAVLGEQGLRLNLLLRLCPVVPYSFLNFAMGLTAARSEDFLLGCLVGMLPAVILLAYVGVAEG 99
            A+D  +G++GL++ LL RL P+ P++ LN+A G+T    +D+LLGC  GM+P  I+  Y+G   G
Sbjct:  139 AIDEAVGKEGLKIVLLTRLSPIFPFTLLNYAYGVTGVSLKDYLLGC-AGMIPGTIMYVYIGSLAG 202          
BLAST of EWM30022.1 vs. NCBI_GenBank
Match: gi|490388975|ref|WP_004268430.1| (TVP38/TMEM64 family protein [Microcystis aeruginosa] >gi|389883069|emb|CCI36510.1| Genome sequencing data, contig C310 [Microcystis aeruginosa PCC 9701])

HSP 1 Score: 64.3142 bits (155), Expect = 1.989e-9
Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = 0
Query:   35 ALDAVLGEQGLRLNLLLRLCPVVPYSFLNFAMGLTAARSEDFLLGCLVGMLPAVILLAYVGVAEG 99
            A+D  +G++GL++ LL RL P+ P++ LN+A G+T    +D+LLGC  GM+P  I+  Y+G   G
Sbjct:  139 AIDEAVGKEGLKIVLLTRLSPIFPFTLLNYAYGVTGVSLKDYLLGC-AGMIPGTIMYVYIGSLAG 202          
BLAST of EWM30022.1 vs. NCBI_GenBank
Match: gi|488829068|ref|WP_002741474.1| (TVP38/TMEM64 family protein [Microcystis aeruginosa] >gi|159028470|emb|CAO87277.1| unnamed protein product [Microcystis aeruginosa PCC 7806] >gi|443335060|gb|ELS49543.1| SNARE associated Golgi family protein [Microcystis aeruginosa DIANCHI905] >gi|1181757361|gb|ARI80715.1| hypothetical protein BH695_1434 [Microcystis aeruginosa PCC 7806SL])

HSP 1 Score: 64.3142 bits (155), Expect = 2.246e-9
Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = 0
Query:   35 ALDAVLGEQGLRLNLLLRLCPVVPYSFLNFAMGLTAARSEDFLLGCLVGMLPAVILLAYVGVAEG 99
            A+D  +G++GL++ LL RL P+ P++ LN+A G+T    +D+LLGC  GM+P  I+  Y+G   G
Sbjct:  139 AIDEAVGKEGLKIVLLTRLSPIFPFTLLNYAYGVTGVSLKDYLLGC-AGMIPGTIMYVYIGSLAG 202          
The following BLAST results are available for this feature:
BLAST of EWM30022.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112646|gb|EWM30022.1|1.297e-111100.00SNARE associated Golgi protein, partial [Nannochlo... [more]
gi|873231341|emb|CEM08577.1|3.519e-1237.78unnamed protein product [Vitrella brassicaformis C... [more]
gi|1125521936|gb|OLE39612.1|2.306e-1152.46hypothetical protein AUI36_25700, partial [Cyanoba... [more]
gi|1210260802|dbj|BAZ79797.1|4.095e-1043.28hypothetical protein NIES73_10430 [Sphaerospermops... [more]
gi|873233189|emb|CEM03564.1|8.660e-1044.29unnamed protein product [Vitrella brassicaformis C... [more]
gi|1088316809|gb|OHB68508.1|1.803e-947.54hypothetical protein A2Y77_08725 [Planctomycetes b... [more]
gi|5916171|gb|AAD55929.1|AF148265_11.859e-945.21hypothetical transmembrane protein [uncultured bac... [more]
gi|817699212|ref|WP_046661847.1|1.969e-943.08TVP38/TMEM64 family protein [Microcystis aeruginos... [more]
gi|490388975|ref|WP_004268430.1|1.989e-943.08TVP38/TMEM64 family protein [Microcystis aeruginos... [more]
gi|488829068|ref|WP_002741474.1|2.246e-943.08TVP38/TMEM64 family protein [Microcystis aeruginos... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna651rna651Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications