rna6500, rna6500 (mRNA) Nannochloropsis gaditana

Overview
Namerna6500
Unique Namerna6500
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1556
Alignment locationCM002468.1:652925..654543 -

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Properties
Property NameValue
Productseptum site-determining protein
Orig transcript idgnl|cribi|Naga_100325g2.3131.mrna
Orig protein idgnl|cribi|Naga_100325g2.3131
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:652925..654543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100325g2gene6280Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24189.1cds6484Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6500rna6500-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6500 ID=rna6500|Name=rna6500|organism=Nannochloropsis gaditana|type=mRNA|length=1556bp
TGTCGTACATGTGGACGGCGCAATATATCTTTAGGGAGGGGGCAGTGGAG
CATGCGCGTCTTCTTGACGTACGGAGTCTCTGAACAGGCTCCCGTGCAAC
GCGTGAACCAGAACAATGGTAGCCATGGTAGCACCAAAATGTTTCACTGA
TCGTACCCACGCTTTGTACCGCACAAGGTCCTTGCACAGACTCGTAAAGA
TGAGCAACAGCAGCGCCAAAACTAAGGGACAGGCTACAGGCGGCGTCGAG
ACGGGCGGGCGGGGAACTACGGGGGCTGCAAAGGCCGGTGGTCATGTCAA
AAGCAATGCCTCCTACCACAAAGGACCCGCTTATGAGGGAGATGAAAATT
TGGAGGACGGCGAATTCTATAGTTTGACGAGTGTGGGCACCTTGATTGTA
CGCATCGTCGCGGCCAGGAATTTGCCGGCGGCAGTGGGGGGAGGTTTCTT
CTCGAACGGCCATTCCAACCCGTACGCCATACTCGAGTTTGAAGGGAGCG
TGCAGGGTACGTCCGTAGTGCCCCATACGCTGGATCCGGTGTGGCCCCGA
GAGCAGTACTTTTTCCAGGTGAAAATGCCCGTCTTACACGCCGACGAAGA
CAGGGAGGGGGAGGGAGGGGGAGGGGGATCTTACAGTGGGCGGCTCCCAG
CCGTCTTTAAGGAGGGGATTAAAGGGGGCCAGGGGGAGTACGACCCGTTG
ATGAAAAAATCGAAGGGCAAGGAAGAGCAGACAACCATGTTTAGCAGTGC
GGAGCCGCATCTGAACGTGAAGTTGGTGCATCGCCACGACGGCGCTCTCT
CGGCCTCCCCCATCCCCCCGCCCGCCTCCGCGGCATCCACGGCATCGACC
GCCCGAGCACAGGCCTCGAGCCCCGGTCGTAGCCGCGGGAGGGGCGTGGA
AGGGGCGGGGGACGGGACGGAGGACCCGACGGAGTTCACCAAGCCGGGGA
GGGCGGGGGGGGGGGAGAGGCCTCCCTCCCTCCCGACGACCGGCTCCTAG
GGGAGGCGTATATCAACGTGGTGGACGTGGCGACGGCGCGCGTCAAGGCC
CTGGATGCCTGGTTCCCCCTGAGCGAGGGGGGCGCCGTGCGGCTGGTGAT
CGAGTACGACGTGCTGGAGGCGGCGCCAGTGGTGGGGGAGAGTGTGCGTC
TGCTTGGTTTTGGCGAAGCGGGAGACTGGTGGCCCATGCCCTTGAAGGAA
GCGATGCGGGTGGAGGAACACGTGGACGTGGACGGCGAGCGTCTCTTGGT
CTCGTGGCAGACCTCGGAGGGCTGGCGCTGCCAGGGGGAGGTGCATCGCT
TCCACGTGATGAGTTCGGAGCGGCATCAGTCGGGCATGAGCGAGTACGAG
GACCGGGCGCTGGCTCTGGCCCTGGCCTTGCAGGAGATGCCGGCGGCGGT
GGCGGTGGGGGAGGTGCTCGACCGTCTCTGCGAGGGGGAGTCGGTGGGGG
AGGTTGCAGAGGCCGTGTGGACCGGGGTGGAGAGGACGTGGGAGAGGTGG
TGGGAGGGCGGGATGGGGCTGGCCGTGAGTGACGTGCGGCGGGCGTTTCG
GCTCCC
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protein sequence of rna6500

>rna6500-protein ID=rna6500-protein|Name=rna6500|organism=Nannochloropsis gaditana|type=polypeptide|length=495bp
MRARLLSTARVGCGLSFPFSQVNARAIRSQSSNVSAPSPPPAPSEDEKPQ
VHLRQYLDAWMGSTGTVSTPRHQNQESPAASRDAQQPFSPPHAPPIAMTV
AGKSYLVPTLRLPRGLSPSELKAGLRATTSLSAGYFQSAPMVVDLGEWLI
SQPLPRGGVRTASAGVGGEVLDGTLLATFVAAMKEAGLHPVGIANATATD
VRAAALELGLPCFMARHAPPSPSTPAPALASVKASAPVPPQRRTEKEGTR
ASASRPAPTTPPSPPPSPPPSSSTRPPPSTSTVRASPTASPPLSPPPSSL
PAMVVQGSVRTGQQVVAEGTSLVVLGHVHSGAEVSADGDIHIYGKLTGRA
LAGLSGDVRANIFVGRFNAELVAIGEVFTTCDVGEGGGRGRREGCRAWSG
GLRVSLWRKRRASSCFVPSRYSSLPSPLQEDGGQGGREGGREGVPDFPPV
LGSLTGAKNGFGSLRSLMGVDLWKMRSGGGRSSMAGRRGTGVPKA
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mRNA from alignment at CM002468.1:652925..654543-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6500 ID=rna6500|Name=rna6500|organism=Nannochloropsis gaditana|type=mRNA|length=1619bp|location=Sequence derived from alignment at CM002468.1:652925..654543- (Nannochloropsis gaditana)
TTGTACAGGGCTACGTAGCAACGAGAGAATGCGAGCAAGGTTGCTGTCGA
CGGCAAGGGTCGGGTGCGGCCTTTCTTTTCCTTTTTCTCAGGTCAATGCG
CGCGCTATTCGAAGTCAGAGCAGCAATGTCTCCGCGCCGAGTCCTCCACC
CGCGCCGTCTGAGGACGAAAAGCCCCAGGTGCACCTTCGGCAGTATTTGG
ACGCGTGGATGGGCAGCACAGGGACAGTCAGCACGCCTCGACACCAGAAT
CAAGAGAGTCCCGCCGCAAGTCGAGACGCACAGCAGCCTTTCTCCCCCCC
TCATGCTCCTCCCATCGCCATGACGGTGGCGGGAAAGTCCTACCTGGTCC
CCACCCTCCGCCTGCCTCGCGGATTGTCACCCTCCGAATTGAAAGCTGGG
CTACGTGCCACTACGAGTTTGAGCGCCGGATACTTTCAAAGCGCCCCCAT
GGTCGTGGATCTGGGGGAGTGGCTGATTTCTCAGCCTTTGCCCCGCGGTG
GCGTGCGGACGGCGTCCGCAGGCGTGGGCGGGGAGGTGCTGGACGGGACC
CTCCTCGCTACCTTTGTGGCGGCGATGAAGGAGGCAGGGCTCCATCCTGT
GGGCATCGCGAATGCCACCGCTACCGACGTTCGAGCGGCGGCCTTGGAGC
TGGGATTGCCCTGCTTCATGGCCCGACACGCGCCTCCCTCCCCTTCGACG
CCGGCGCCTGCGCTCGCTTCCGTCAAGGCTAGCGCCCCTGTGCCCCCACA
GCGGCGAACAGAGAAGGAAGGAACCAGGGCTTCGGCCTCGCGGCCCGCAC
CGACCACCCCGCCCTCCCCCCCGCCCTCCCCCCCGCCCTCCTCCTCCACT
AGGCCGCCACCTTCCACATCCACCGTCCGCGCCAGCCCTACCGCCTCCCC
GCCCCTTTCTCCTCCGCCCTCCTCCCTCCCCGCCATGGTGGTGCAAGGCA
GTGTCCGCACGGGGCAGCAGGTGGTCGCGGAGGGGACGTCCTTGGTCGTG
CTGGGCCACGTCCACTCGGGGGCCGAGGTCTCCGCCGACGGGGACATCCA
CATCTACGGCAAGCTCACTGGAAGGGCCCTGGCGGGCTTGTCGGGGGACG
TGCGGGCCAATATATTTGTGGGGAGGTTCAACGCGGAGCTGGTGGCGATC
GGAGAGGTCTTCACCACCTGTGACGTGGGGGAGGGAGGGGGGAGGGGGAG
GAGGGAGGGGTGCAGGGCGTGGTCGGGGGGCCTGCGAGTGTCTCTCTGGA
GGAAAAGACGGGCCAGCTCGTGTTTCGTACCTTCAAGGTATAGCTCTTTG
CCGAGTCCTCTTCAGGAAGACGGCGGGCAGGGAGGGAGGGAGGGAGGGAG
GGAGGGGGTTCCTGACTTCCCACCAGTGCTAGGGAGCCTCACAGGAGCAA
AAAATGGGTTTGGAAGCTTGAGGTCCTTGATGGGTGTGGATTTGTGGAAA
ATGCGATCCGGAGGAGGGCGGTCTTCCATGGCGGGAAGGAGGGGCACGGG
CGTGCCCAAGGCCTGAGGCGAGGGGAAGGACGAGAAAGAGAGCTTGGGGG
GACCCTGCGGGTGAGAAAAGTAAACAACAGCACTCGTGGCGTCGTCTCTC
GAAGGAATGTTTTATTCCC
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Coding sequence (CDS) from alignment at CM002468.1:652925..654543-

>rna6500 ID=rna6500|Name=rna6500|organism=Nannochloropsis gaditana|type=CDS|length=1488bp|location=Sequence derived from alignment at CM002468.1:652925..654543- (Nannochloropsis gaditana)
ATGCGAGCAAGGTTGCTGTCGACGGCAAGGGTCGGGTGCGGCCTTTCTTT
TCCTTTTTCTCAGGTCAATGCGCGCGCTATTCGAAGTCAGAGCAGCAATG
TCTCCGCGCCGAGTCCTCCACCCGCGCCGTCTGAGGACGAAAAGCCCCAG
GTGCACCTTCGGCAGTATTTGGACGCGTGGATGGGCAGCACAGGGACAGT
CAGCACGCCTCGACACCAGAATCAAGAGAGTCCCGCCGCAAGTCGAGACG
CACAGCAGCCTTTCTCCCCCCCTCATGCTCCTCCCATCGCCATGACGGTG
GCGGGAAAGTCCTACCTGGTCCCCACCCTCCGCCTGCCTCGCGGATTGTC
ACCCTCCGAATTGAAAGCTGGGCTACGTGCCACTACGAGTTTGAGCGCCG
GATACTTTCAAAGCGCCCCCATGGTCGTGGATCTGGGGGAGTGGCTGATT
TCTCAGCCTTTGCCCCGCGGTGGCGTGCGGACGGCGTCCGCAGGCGTGGG
CGGGGAGGTGCTGGACGGGACCCTCCTCGCTACCTTTGTGGCGGCGATGA
AGGAGGCAGGGCTCCATCCTGTGGGCATCGCGAATGCCACCGCTACCGAC
GTTCGAGCGGCGGCCTTGGAGCTGGGATTGCCCTGCTTCATGGCCCGACA
CGCGCCTCCCTCCCCTTCGACGCCGGCGCCTGCGCTCGCTTCCGTCAAGG
CTAGCGCCCCTGTGCCCCCACAGCGGCGAACAGAGAAGGAAGGAACCAGG
GCTTCGGCCTCGCGGCCCGCACCGACCACCCCGCCCTCCCCCCCGCCCTC
CCCCCCGCCCTCCTCCTCCACTAGGCCGCCACCTTCCACATCCACCGTCC
GCGCCAGCCCTACCGCCTCCCCGCCCCTTTCTCCTCCGCCCTCCTCCCTC
CCCGCCATGGTGGTGCAAGGCAGTGTCCGCACGGGGCAGCAGGTGGTCGC
GGAGGGGACGTCCTTGGTCGTGCTGGGCCACGTCCACTCGGGGGCCGAGG
TCTCCGCCGACGGGGACATCCACATCTACGGCAAGCTCACTGGAAGGGCC
CTGGCGGGCTTGTCGGGGGACGTGCGGGCCAATATATTTGTGGGGAGGTT
CAACGCGGAGCTGGTGGCGATCGGAGAGGTCTTCACCACCTGTGACGTGG
GGGAGGGAGGGGGGAGGGGGAGGAGGGAGGGGTGCAGGGCGTGGTCGGGG
GGCCTGCGAGTGTCTCTCTGGAGGAAAAGACGGGCCAGCTCGTGTTTCGT
ACCTTCAAGGTATAGCTCTTTGCCGAGTCCTCTTCAGGAAGACGGCGGGC
AGGGAGGGAGGGAGGGAGGGAGGGAGGGGGTTCCTGACTTCCCACCAGTG
CTAGGGAGCCTCACAGGAGCAAAAAATGGGTTTGGAAGCTTGAGGTCCTT
GATGGGTGTGGATTTGTGGAAAATGCGATCCGGAGGAGGGCGGTCTTCCA
TGGCGGGAAGGAGGGGCACGGGCGTGCCCAAGGCCTGA
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Synonyms
Publications