rna6498, rna6498 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6498
Unique Name	rna6498
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2566
Alignment location	CM002468.1:647804..649794 -

Link to JBrowse

Properties


Property Name	Value
Product	mitochondrial rna splicing protein
Orig transcript id	gnl\|cribi\|Naga_100325g4.3133.mrna
Orig protein id	gnl\|cribi\|Naga_100325g4.3133
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:647804..649794 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100325g4	gene6278	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24191.1	cds6482	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6498	rna6498-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:647804..649794-
coding sequence from alignment at CM002468.1:647804..649794-

mRNA sequence

>rna6498 ID=rna6498|Name=rna6498|organism=Nannochloropsis gaditana|type=mRNA|length=2566bp
GAAAGATTTGGGAAGGAATTGTGGTACCATGGACCAGGCACCGTGGAGAT
TCGCTCGCTTTTGGGTATCGTGGTACATTTGTGGCGTCGCGGCCGACGAC
TGCGGCGTAAACCTGACGTTCTCCTGTCCTGTCCGTGCACGCGTGAATCT
GCCTCGATTCTTCCTCAAAGCGCGACAACCCAGATGGGTCGCATAACATT
ACGACATCGCAGGAGTAGTCTTTAGACATGATGCACTTGCACGATGCCTT
CTGCACATGTTTGTGACTAGTACGTTTGTTGTCCTTTTCCGCATTGTTGT
TTACGACGGTGCGTCGTGTTTATGTTCAAGACGCGCACCCGCGTCTTATC
TGAGCTTTCGCCACGCCATTCATGAAGCAAACCGACAGATATCAATGCCT
TCGGACAACATTCACGCCGTTGCTGCTACTCCTCGTGCTTCCGCACCACG
CCCCTCTCCTAAGAAGGGACGTACACTTGCGGCACCGGAATCTAGGTTGC
AAAGCATGCGCACACTCACACAGGTCCTATTGCACGAGCAAAAAGGCATC
GTCGAGGTGTCCTGGCAAGACGGCACCCGCGGCCTCTTCCACGGCGCCTG
GCTCCGCGACAATTGCCCGGTCTACTTCGACAATTCGACCGGACAACGCA
CCAAGAACACCTTGCAATTAGGTCCCGAGGCCTACGTGCTCTCCGCGTGT
GCCGCCGGCCCCGCCAAAGGTCAACCCTCGTCTGGCGCCTCCGCCGAATT
CCTCCAAGTCACCTGGAAGGACGGATTCTCGCACGCCTTCCCCTCAGCCT
GGCTCCGGCAGCATTGCTATGAGACACGGCAGCACCATCAGGTGAACCCG
CGCATGTGGGGCCGCGACTTGGTCTCCTACTTCCCGGGGTACGTCCTTCC
CACCCTCCCTTACTCGGACGTGGTCAAGGTCGCGGCTGGCAGTGACGCGG
GCTGGCAGACCTCCGCACAGGGCTTTGTCCAATGGATGGTGCACCTGCGC
GACTACGGCGTGGCCCTGATCGAGGACGTGCCCACGACCCCCGGGACTGT
CATGAAAATGGCCGACCTGATCGCCTACCACCGGAAGACGCACTACGGCA
ACTCCTTCCAAGTGGTGTCGGCCCGCAAACCCGAACATCTCGCCTACACC
CCCGTGGAACTGGAGGTACACACGGATCTGAACTACCGGGAGAGCAGCCC
GGGCATTCAGCTCTTGCACTGTCTGGCCGCCGACGCGGCGGGGGGCGAGA
GCACCTTCGTGGACGGCTTCTGGGTGGCGGAGACGCTGCGTCGGGAGAGT
GCCGAGGACTACCGGACCTTGTGCGAGGTGCCCATTCCCTTCCTGGTCAA
GGACGGGGAGGGCTTCCACTACCACAAGATCCCTACCATCTGCCTGGACG
ACGCGGGTCGCCTGGTCGAGATCCATTTCAACGAGCGCACCCGCGGGCCC
TTGGAGTTGCCGGCGGCCGTCATGGGCCGCGTCTATCGAGCCCTGGCGCA
TTTCCAGGCGATCGCCTGCCGACCTGAGCTTTGCGTGGAGGTGAAAATGA
AGGCGGGGGACATGGTCGCGTTCAACAACCGGCGCATCTTGCACGGGCGG
AAGGCCTTCGACCCTCGGACGGGCATGCGGCACCTGGAGGGGACCTACGT
GGACATGGACGAGTTCCTGACCTGCCTGCGCAAGCATGGCGTTACCCCCC
TGAGCATTGTGCGGGCACAGGAAGGGAGCTGGGCCCGGGTGGTGGAAGGG
ACGGACGGCTTGGATGAGAAGGGGAGGCGGCGGGAGACCCTTGGCCTGGT
GGGGATGGGCGGGAAGGGGAAAGGGTCTGCGCCGCGGTCGTCTCTCTGAG
GTGCCCACGGGAGCGAAATTTAGACATGAGAAAGGAAGTGCGTTAGGAAG
AGAGTGATTTGTGGGCAAATTTATTGAAATGTGAGTCTGATGATTAGTCA
CTATTTCGAAGTACTGAATACACGTACGTAGTAATGACACAGACGTTTTG
GCGAAGGCTTATAAGAATTTTGCTGCTGTGGACATCATTGTCTGGAGTGC
CCGGCGCTTCTCATCAAGCAATGAGGACCATGCAGCCAAAATAAATAAAT
AAGAAACGGGTTCGGTGTTCAGTAAAGTGTGAGCTAGCGAGGAAGCAAGA
TAGGCGCGAAGCCGGTCGGTTAGGTCGGAGGGGTGCTGGGCTGAGTGACA
ATTTTAGAAGGGAGAATGGAGTGATGCAGGTGCGTGGACGGCCGTCGGAA
GGAGACTCAGACGTGCGTCGGGCTCAGCGCGATAGGGGCGGCGCTAGCGA
CATCGGGGATCGGGAGACTGCGATGCGACGCGGCAACGGGGAGATGGAGG
CGAATGACACGAGAGGCTAGGTAAATGAAGGAAATGTGAGGAAGCTCTCT
GGTTGCGTGAGATGGGGACGGGTGGTCAGAGTGAAGGTGCGTCTCCTGCG
TGCGATCGAGGCGAAATTTTACAACACATCTCAAAGAGAAGAAATTTGGC
GGCGAAATTTTACAACAGTCCTCAAAAAGAAAAAAAAGAATAAGGCAACT
ACCGCGGGCCCTTGGA

protein sequence of rna6498

>rna6498-protein ID=rna6498-protein|Name=rna6498|organism=Nannochloropsis gaditana|type=polypeptide|length=577bp
MRRILQEGRRHTRGTFNISSHSQPFHALRLPPTFSRPPLLPASLGLRFIR
IGRKGEDGPHFSTQKDETKRAPQRTSLSPYEIVATKLGRFDRQLQALQVD
AEGEVSTCTTSIKELLLDTQMHVRDLIALSPEALRKRGGRLTPCILPRKD
VIVFVMHPLRLVISKNSCLAFDPGDPTVQSVIADISSAIKIQQLERAHLA
KSGNGSVLEPYTISYELVVLEQALRSFCNQFSRIKELLGLIVETSLKALV
DSQGSDQEEQLYRLVPLKDGLSVAQHNMQEAVGVLQQLVDCDEDMLAMLL
TEKAALQKEKARVSSQAARLDLNLHSDVELLLENYLRELILTGQQIKMLQ
ARVQSAQEVFSINVDLMRNRVLRITLLLTILSTSLASAATIGAFFGMNVR
LPESLETHPEAFAWITVGSICLGAGLFALAVAFARGHGKDRVRRDLQSVA
AFQSIFKHIRSVSQAIYQTSLDPKEVAMGKTKESRAYFRKMLSAHRNYEV
SWEEVDVLMDVLGASADQFRQQQKYSDETSEATIYRKLFESLAAQERQET
SGDEDLEAAGREARDRVAEARRERPPV

mRNA from alignment at CM002468.1:647804..649794-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6498 ID=rna6498|Name=rna6498|organism=Nannochloropsis gaditana|type=mRNA|length=1991bp|location=Sequence derived from alignment at CM002468.1:647804..649794- (Nannochloropsis gaditana)
GAGACGATCGACTTAAGATCCTTATTTTGTAGCCAAGGCAGTTGATGACG
AATCAAAATTGAGCTTCTAGTTTTGTTAAATCGTGTTTCTTTCCTCTTAT
CTGACGAAAATCAGCCCGGAGGGGCTCTTGATCCGCATCTACCCTAACAG
GAAGCAAGCACGGCGCACCCAAATGCGAAGAATTTTGCAAGAAGGGCGCA
GACATACCCGGGGAACCTTCAACATCTCCAGTCACTCACAACCTTTTCAT
GCCTTGAGACTTCCTCCCACTTTTAGCCGACCTCCGCTTCTTCCTGCCTC
TCTGGGTCTTCGATTCATCAGGATCGGCCGGAAAGGGGAAGATGGCCCTC
ATTTTTCAACGCAAAAGGACGAGACCAAGAGGGCACCGCAACGCACCTCC
CTGTCTCCCTACGAGATTGTTGCCACAAAACTCGGGCGCTTTGACCGACA
ATTGCAGGCGTTGCAGGTAGACGCCGAGGGGGAGGTGAGCACATGCACGA
CTTCCATCAAAGAGCTCTTACTGGACACCCAAATGCACGTCAGAGACCTG
ATCGCGCTCTCTCCCGAGGCCCTTCGTAAGCGGGGCGGTCGCCTGACTCC
CTGTATCCTCCCCCGGAAAGACGTAATCGTCTTCGTGATGCATCCCTTGC
GCCTCGTGATTTCCAAGAACAGTTGTCTGGCCTTCGATCCCGGGGACCCC
ACCGTTCAGTCTGTCATCGCCGACATTTCTTCCGCCATCAAGATCCAGCA
GTTGGAGAGGGCTCACCTGGCCAAGTCGGGGAATGGGTCGGTCCTAGAGC
CGTACACCATTTCCTACGAGCTGGTGGTGCTGGAGCAGGCCTTACGCAGC
TTCTGCAACCAGTTCTCCCGCATCAAGGAGCTCCTGGGCTTGATCGTCGA
GACCTCATTGAAAGCCCTGGTCGACTCACAAGGATCCGACCAGGAAGAGC
AGCTGTACAGGCTCGTGCCCCTCAAGGACGGGTTATCGGTGGCGCAACAC
AACATGCAGGAGGCCGTGGGGGTCTTGCAGCAGCTCGTGGACTGCGACGA
GGACATGCTCGCCATGCTCCTCACAGAAAAAGCCGCGTTGCAGAAGGAGA
AGGCACGCGTCTCCAGCCAAGCGGCCCGACTGGACCTCAATCTGCACTCG
GACGTGGAGCTCCTGTTGGAAAACTACCTTCGGGAGTTGATTCTCACGGG
GCAGCAGATCAAGATGCTGCAGGCACGAGTTCAGAGCGCGCAGGAGGTGT
TCTCCATCAACGTGGATCTGATGCGGAACCGCGTGCTTCGTATCACGCTG
CTCCTGACCATCCTCAGCACCAGCCTCGCCTCCGCCGCCACCATTGGCGC
ATTTTTTGGCATGAACGTCCGGCTGCCCGAGTCCCTCGAAACCCATCCGG
AGGCCTTTGCCTGGATCACGGTCGGCTCCATCTGCCTGGGGGCAGGTCTC
TTCGCTTTGGCCGTCGCCTTTGCCAGGGGGCACGGGAAGGATCGGGTCCG
TCGAGACCTCCAGTCCGTGGCGGCCTTCCAATCCATTTTCAAGCACATCC
GTTCCGTCAGTCAAGCCATCTACCAGACATCTCTAGACCCGAAAGAGGTG
GCCATGGGGAAAACGAAGGAGTCCCGCGCCTACTTTCGGAAGATGCTCAG
CGCGCACCGGAACTACGAGGTGTCGTGGGAGGAGGTGGACGTCTTGATGG
ACGTCCTCGGGGCCTCGGCCGACCAATTCCGGCAACAACAGAAGTACAGC
GACGAGACGAGCGAGGCGACCATCTATCGGAAGCTCTTCGAGTCCCTGGC
CGCGCAGGAGAGGCAGGAGACGTCGGGGGACGAGGATCTCGAGGCAGCGG
GGAGAGAGGCGCGTGATCGGGTGGCGGAGGCCAGGAGAGAGAGGCCGCCG
GTCTGAAGATCGTAAGGGGCTGTTTATATGGTGAAAAAGCAAATGTACGG
ATGCTTTTTCGAAAGCCATCCCTCAAATCAAATTCACGTCC

Coding sequence (CDS) from alignment at CM002468.1:647804..649794-

>rna6498 ID=rna6498|Name=rna6498|organism=Nannochloropsis gaditana|type=CDS|length=1734bp|location=Sequence derived from alignment at CM002468.1:647804..649794- (Nannochloropsis gaditana)
ATGCGAAGAATTTTGCAAGAAGGGCGCAGACATACCCGGGGAACCTTCAA
CATCTCCAGTCACTCACAACCTTTTCATGCCTTGAGACTTCCTCCCACTT
TTAGCCGACCTCCGCTTCTTCCTGCCTCTCTGGGTCTTCGATTCATCAGG
ATCGGCCGGAAAGGGGAAGATGGCCCTCATTTTTCAACGCAAAAGGACGA
GACCAAGAGGGCACCGCAACGCACCTCCCTGTCTCCCTACGAGATTGTTG
CCACAAAACTCGGGCGCTTTGACCGACAATTGCAGGCGTTGCAGGTAGAC
GCCGAGGGGGAGGTGAGCACATGCACGACTTCCATCAAAGAGCTCTTACT
GGACACCCAAATGCACGTCAGAGACCTGATCGCGCTCTCTCCCGAGGCCC
TTCGTAAGCGGGGCGGTCGCCTGACTCCCTGTATCCTCCCCCGGAAAGAC
GTAATCGTCTTCGTGATGCATCCCTTGCGCCTCGTGATTTCCAAGAACAG
TTGTCTGGCCTTCGATCCCGGGGACCCCACCGTTCAGTCTGTCATCGCCG
ACATTTCTTCCGCCATCAAGATCCAGCAGTTGGAGAGGGCTCACCTGGCC
AAGTCGGGGAATGGGTCGGTCCTAGAGCCGTACACCATTTCCTACGAGCT
GGTGGTGCTGGAGCAGGCCTTACGCAGCTTCTGCAACCAGTTCTCCCGCA
TCAAGGAGCTCCTGGGCTTGATCGTCGAGACCTCATTGAAAGCCCTGGTC
GACTCACAAGGATCCGACCAGGAAGAGCAGCTGTACAGGCTCGTGCCCCT
CAAGGACGGGTTATCGGTGGCGCAACACAACATGCAGGAGGCCGTGGGGG
TCTTGCAGCAGCTCGTGGACTGCGACGAGGACATGCTCGCCATGCTCCTC
ACAGAAAAAGCCGCGTTGCAGAAGGAGAAGGCACGCGTCTCCAGCCAAGC
GGCCCGACTGGACCTCAATCTGCACTCGGACGTGGAGCTCCTGTTGGAAA
ACTACCTTCGGGAGTTGATTCTCACGGGGCAGCAGATCAAGATGCTGCAG
GCACGAGTTCAGAGCGCGCAGGAGGTGTTCTCCATCAACGTGGATCTGAT
GCGGAACCGCGTGCTTCGTATCACGCTGCTCCTGACCATCCTCAGCACCA
GCCTCGCCTCCGCCGCCACCATTGGCGCATTTTTTGGCATGAACGTCCGG
CTGCCCGAGTCCCTCGAAACCCATCCGGAGGCCTTTGCCTGGATCACGGT
CGGCTCCATCTGCCTGGGGGCAGGTCTCTTCGCTTTGGCCGTCGCCTTTG
CCAGGGGGCACGGGAAGGATCGGGTCCGTCGAGACCTCCAGTCCGTGGCG
GCCTTCCAATCCATTTTCAAGCACATCCGTTCCGTCAGTCAAGCCATCTA
CCAGACATCTCTAGACCCGAAAGAGGTGGCCATGGGGAAAACGAAGGAGT
CCCGCGCCTACTTTCGGAAGATGCTCAGCGCGCACCGGAACTACGAGGTG
TCGTGGGAGGAGGTGGACGTCTTGATGGACGTCCTCGGGGCCTCGGCCGA
CCAATTCCGGCAACAACAGAAGTACAGCGACGAGACGAGCGAGGCGACCA
TCTATCGGAAGCTCTTCGAGTCCCTGGCCGCGCAGGAGAGGCAGGAGACG
TCGGGGGACGAGGATCTCGAGGCAGCGGGGAGAGAGGCGCGTGATCGGGT
GGCGGAGGCCAGGAGAGAGAGGCCGCCGGTCTGA

Synonyms

Publications