rna6496, rna6496 (mRNA) Nannochloropsis gaditana

Overview
Namerna6496
Unique Namerna6496
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length993
Alignment locationCM002468.1:643754..644447 -

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Properties
Property NameValue
Productflagellar associated protein
Orig transcript idgnl|cribi|Naga_100325g6.3134.mrna
Orig protein idgnl|cribi|Naga_100325g6.3134
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:643754..644447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100325g6gene6276Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6496rna6496-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24192.1cds6480Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6496 ID=rna6496|Name=rna6496|organism=Nannochloropsis gaditana|type=mRNA|length=993bp
ATGGCACCCTGTCGGAATGCCCTCACCGTAGCCCTGCTCACGAGCGGCGC
ATTTACACAAGCTTTTTGGGTCGCGCCTGCCACACCATGGCTCCATGGCT
CCCGTCACTTCTCAAAAGACGTAACCGCGCCGCTGATGGCAACATCGGAG
ACTACCAACTCAAACGTCCCCCCTCCCTTGACACTGGAAGAAATATCGAA
CAAAATAAAATTTGAAATCACCGATCTGGATGCAGGCGCCTACGGCTTAG
AGAGCAAGGATGTAGCATACGCAGTGGAAATTGCCAAGGTTGACATTCCC
CTGGGAGGGGGCGGCATTGGGCTGGGGCTGGAGGAATTACGACGGGGGCA
GGACGGGCGCGGGTGCGTGCTCGTCTCCTCCCTACCCCCGGAAGGCAACG
CCGCCCAAGCGGCCGGAGACGACGGGAAGATCCGAGTGGGGGACATGATT
TGCTACCTGGGCCAAGAGCCTCGGGGCATGGTGCGGACGGAGGGCTTGGA
CTTCGAGCAAACCATGGGGGCGCTCCGCCGCTTCCTGGAGACGGGCGCCC
CCGCCATCACCCTGGTGCTGAAACGCCTGGTCTTTCGGGCCTCCCTGGAC
GTTTCGCTCTCCTACACACCCGGCCCCGACGAGGAGAGCCAGGGCCGCAA
GGCTTGGACCCAAACGCTGCCCATGTTGGCAGGCTCCCAGCTTCGGAAAG
AGCTCCTTCGCGCTGGCTTGCCCGTGTACAGCCAGGACACGCTGCGGTTC
GACCAGCCTTACGTGACAGGGAATTGCGGCGGGGAAGGGATCTGTGGGAC
CTGCCTGGTCCAGGTTTTGGAGGGAAAGGAGCTCTTGAACGAGAAGGACG
AGGTGGAGGCGATGGTGACCCGGAAATGGGGAGCAGCCAACTGGCGCTTG
TCCTGCCGAGTCATCGTGGGCGCCACCAACACGCCGGGCACCGTCCGTTT
TAAATTGATGCCCCAGGCGCCCTTCACCAAGAAGAAGCCGTGA
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protein sequence of rna6496

>rna6496-protein ID=rna6496-protein|Name=rna6496|organism=Nannochloropsis gaditana|type=polypeptide|length=80bp
MSKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLL
DTPCHLSRVQILSHQSKIATKVELFVGDGF
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mRNA from alignment at CM002468.1:643754..644447-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6496 ID=rna6496|Name=rna6496|organism=Nannochloropsis gaditana|type=mRNA|length=694bp|location=Sequence derived from alignment at CM002468.1:643754..644447- (Nannochloropsis gaditana)
ATGAGCAAAATTCGTTTCCAGGTATGTTGGTCAAGAGCGCGCGAAATAGA
AGAAAAATGAGGCGAAAAGAGACGTGAGGGCAAATTTTTCTGGGAAACCA
TGAAAATCGCCTCGTGTCTAGACTTTCGGGTATTGAAAAGAAGAGCATGT
TGTATTTTTATGGAGGATTCCATTGGTTTGTGTATTACTGCCGTGGTCTC
TGCGGGTACCAGGACAGAAAAAAGATGCCTGAACATTTTTGACAAGCTTC
CAGCGCATCCAATGCGTCCATCTTTCAGTTAAGCGTCCCATTTTCATCAG
CCGTGATGCTCAACATGTCCTTTTCCACCATTTACAACGTTTCCGGCTAA
CCAGGTGGTCTATGCCTCGGGGCAGGACCCTGAACATCCGGCGGAAGAGT
TGAACGTCCACAGCCCCGCCACGGAAGGGTGGCAATCTCCGCGCTTCTGT
GACTATCCTCAAGAGCTTGGCCTCTTCCTGCTTGACACACCCTGTCACTT
GTCACGTGTCCAAATCCTGTCGCATCAGTCCAAAATCGCCACCAAAGTAG
AGCTCTTCGTCGGGGACGGTGGGAACTACGCGGAGGCGGCCTTCGCACGC
CTGGGATACCTGTCCCTAAACAGCAACCAACGGTCCAACTTTCGAGCGCG
CGAACTCAAGAGCGTGTTCGTGTCCTGCTCGGGCAGGTTTTTGA
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Coding sequence (CDS) from alignment at CM002468.1:643754..644447-

>rna6496 ID=rna6496|Name=rna6496|organism=Nannochloropsis gaditana|type=CDS|length=729bp|location=Sequence derived from alignment at CM002468.1:643754..644447- (Nannochloropsis gaditana)
GTTTTTGAGTGGTCTATGCCTCGGGGCAGGACCCTGAACATCCGGCGGAA
GAGTTGAACGTCCACAGCCCCGCCACGGAAGGGTGGCAATCTCCGCGCTT
CTGTGACTATCCTCAAGAGCTTGGCCTCTTCCTGCTTGACACACCCTGTC
ACTTGTCACGTGTCCAAATCCTGTCGCATCAGTCCAAAATCGCCACCAAA
GTAGAGCTCTTCGTCGGGGACGATGAGCAAAATTCGTTTCCAGGTTTTTG
AGTGGTCTATGCCTCGGGGCAGGACCCTGAACATCCGGCGGAAGAGTTGA
ACGTCCACAGCCCCGCCACGGAAGGGTGGCAATCTCCGCGCTTCTGTGAC
TATCCTCAAGAGCTTGGCCTCTTCCTGCTTGACACACCCTGTCACTTGTC
ACGTGTCCAAATCCTGTCGCATCAGTCCAAAATCGCCACCAAAGTAGAGC
TCTTCGTCGGGGACGATGAGCAAAATTCGTTTCCAGGTTTTTGAGTGGTC
TATGCCTCGGGGCAGGACCCTGAACATCCGGCGGAAGAGTTGAACGTCCA
CAGCCCCGCCACGGAAGGGTGGCAATCTCCGCGCTTCTGTGACTATCCTC
AAGAGCTTGGCCTCTTCCTGCTTGACACACCCTGTCACTTGTCACGTGTC
CAAATCCTGTCGCATCAGTCCAAAATCGCCACCAAAGTAGAGCTCTTCGT
CGGGGACGATGAGCAAAATTCGTTTCCAG
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Synonyms
Publications