EWM24192.1, cds6480 (CDS) Nannochloropsis gaditana

Overview
NameEWM24192.1
Unique Namecds6480
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:644427..644447 -
Alignment locationCM002468.1:643880..644093 -
Alignment locationCM002468.1:643754..643761 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24192.1
Productflagellar associated protein
Orig transcript idgnl|cribi|Naga_100325g6.3134.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:644427..644447 -
CM002468.1supercontigCM002468.1:643880..644093 -
CM002468.1supercontigCM002468.1:643754..643761 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
Homology
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|585105578|gb|EWM24192.1| (flagellar associated protein [Nannochloropsis gaditana])

HSP 1 Score: 169.474 bits (428), Expect = 1.679e-53
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
Query:    1 MSKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGDGF 80
            MSKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGDGF
Sbjct:    1 MSKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGDGF 80          
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|553193371|ref|XP_005855762.1| (hypothetical protein NGA_0603000 [Nannochloropsis gaditana CCMP526] >gi|422293303|gb|EKU20603.1| hypothetical protein NGA_0603000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 170.629 bits (431), Expect = 1.770e-51
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query:    1 MSKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGDG 79
            MSKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGDG
Sbjct:    1 MSKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGDG 79          
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|551647711|ref|XP_005826639.1| (hypothetical protein GUITHDRAFT_76219 [Guillardia theta CCMP2712] >gi|428170737|gb|EKX39659.1| hypothetical protein GUITHDRAFT_76219 [Guillardia theta CCMP2712])

HSP 1 Score: 102.064 bits (253), Expect = 1.848e-24
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 0
Query:    2 SKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVG 77
            +K++F++V+ S +DPE PA ELN HSP T GWQS RFCDYPQE+G F   +  HL ++Q+LSHQ KIA+K+ELFVG
Sbjct:    3 AKLKFKLVHCSSEDPEFPATELNAHSPHTVGWQSARFCDYPQEIG-FQFSSTVHLMQLQVLSHQFKIASKLELFVG 77          
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|971512455|dbj|GAQ85746.1| (Galactose-binding domain-like [Klebsormidium nitens])

HSP 1 Score: 98.9821 bits (245), Expect = 2.118e-22
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 0
Query:    3 KIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVG 77
            K+RF V  ASG+DP++PA+ELN HSP T+GWQSPRFC +PQEL +  LD P  + ++Q+LSH+ KI+ K+E+FVG
Sbjct:    8 KLRFTVESASGEDPDYPAKELNFHSPHTKGWQSPRFCKFPQEL-ILQLDKPAQVHQIQLLSHEFKISCKIEVFVG 81          
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|676394003|ref|XP_009040279.1| (hypothetical protein AURANDRAFT_72373 [Aureococcus anophagefferens] >gi|323449033|gb|EGB04924.1| hypothetical protein AURANDRAFT_72373 [Aureococcus anophagefferens])

HSP 1 Score: 96.6709 bits (239), Expect = 1.360e-21
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 0
Query:    1 MSKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGDG 79
            M+K+ + V+  SG DP+  A ELNVHSP T GWQ+ RFC+YPQE+ +  L     +S++Q+LSHQ KIAT++ELFVG G
Sbjct:    1 MAKLNYSVIACSGADPDFAATELNVHSPHTRGWQTSRFCEYPQEV-IVELARGASISQIQLLSHQHKIATRIELFVGSG 78          
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|302837157|ref|XP_002950138.1| (hypothetical protein VOLCADRAFT_104552 [Volvox carteri f. nagariensis] >gi|300264611|gb|EFJ48806.1| hypothetical protein VOLCADRAFT_104552 [Volvox carteri f. nagariensis])

HSP 1 Score: 92.4337 bits (228), Expect = 3.696e-20
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 0
Query:    3 KIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVG 77
            K+RF V   SG+D ++P  EL  HSP T GWQSPRFC YPQE+ L L  T C + ++QILSH+ KIAT+VE+FVG
Sbjct:    9 KLRFTVHAFSGEDTDYPVRELLFHSPQTRGWQSPRFCKYPQEIVLRLEQT-CKVQQIQILSHEYKIATRVEVFVG 82          
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|923126196|ref|XP_013756565.1| (hypothetical protein AMSG_12034 [Thecamonas trahens ATCC 50062] >gi|906557835|gb|KNC51078.1| hypothetical protein AMSG_12034 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 92.0485 bits (227), Expect = 5.392e-20
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 0
Query:    2 SKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGD 78
            SK++F VV  SG+D EHP  EL  H+P T+GW+SPRFCDYP E+ +   D P  + ++Q  SHQ  +ATK+ELFVG+
Sbjct:    3 SKLKFTVVACSGEDDEHPVVELERHTPHTKGWRSPRFCDYPLEI-VLAFDAPARIRKLQFYSHQYLVATKIELFVGN 78          
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|159489390|ref|XP_001702680.1| (flagellar associated protein [Chlamydomonas reinhardtii] >gi|158280702|gb|EDP06459.1| flagellar associated protein [Chlamydomonas reinhardtii])

HSP 1 Score: 91.6633 bits (226), Expect = 6.534e-20
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 0
Query:    3 KIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVG 77
            K+RF +   SG+D ++P  EL  HSP T GWQSPRFC YPQE+ L L  T C + ++QIL+H+ KIAT+VE+FVG
Sbjct:    9 KLRFTIHACSGEDTDYPVRELLYHSPQTRGWQSPRFCKYPQEIVLRLEQT-CKVQQIQILAHEYKIATRVEVFVG 82          
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|303279488|ref|XP_003059037.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226460197|gb|EEH57492.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 90.8929 bits (224), Expect = 1.405e-19
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 0
Query:    2 SKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVG 77
            SK+RF V + SG+D ++PA EL+ H+P T GWQ  RF  +PQEL +  LD P  + ++QILSH+ KIATKVEL+ G
Sbjct:    9 SKLRFTVAHVSGEDEDYPARELHFHTPQTRGWQCARFSKFPQEL-VLRLDHPARIHQIQILSHEYKIATKVELYTG 83          
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|908417481|ref|XP_013070036.1| (PREDICTED: LOW QUALITY PROTEIN: centrosomal protein of 104 kDa-like [Biomphalaria glabrata])

HSP 1 Score: 89.3521 bits (220), Expect = 4.891e-19
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 0
Query:    3 KIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGD 78
            K++F+V++ASGQD  + A ELN HSP T+GWQS RFC YPQ++ +  L+T   L ++QILSHQ  I TK+E FVGD
Sbjct:   16 KLQFKVIHASGQDDIYRASELNHHSPLTKGWQSARFCLYPQDM-VIQLETRSRLRKIQILSHQFLIPTKIEFFVGD 90          
The following BLAST results are available for this feature:
BLAST of EWM24192.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105578|gb|EWM24192.1|1.679e-53100.00flagellar associated protein [Nannochloropsis gadi... [more]
gi|553193371|ref|XP_005855762.1|1.770e-51100.00hypothetical protein NGA_0603000 [Nannochloropsis ... [more]
gi|551647711|ref|XP_005826639.1|1.848e-2460.53hypothetical protein GUITHDRAFT_76219 [Guillardia ... [more]
gi|971512455|dbj|GAQ85746.1|2.118e-2258.67Galactose-binding domain-like [Klebsormidium niten... [more]
gi|676394003|ref|XP_009040279.1|1.360e-2154.43hypothetical protein AURANDRAFT_72373 [Aureococcus... [more]
gi|302837157|ref|XP_002950138.1|3.696e-2058.67hypothetical protein VOLCADRAFT_104552 [Volvox car... [more]
gi|923126196|ref|XP_013756565.1|5.392e-2053.25hypothetical protein AMSG_12034 [Thecamonas trahen... [more]
gi|159489390|ref|XP_001702680.1|6.534e-2056.00flagellar associated protein [Chlamydomonas reinha... [more]
gi|303279488|ref|XP_003059037.1|1.405e-1953.95predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|908417481|ref|XP_013070036.1|4.891e-1956.58PREDICTED: LOW QUALITY PROTEIN: centrosomal protei... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6496rna6496Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications