EWM24192.1, cds6480 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|585105578|gb|EWM24192.1| (flagellar associated protein [Nannochloropsis gaditana]) HSP 1 Score: 169.474 bits (428), Expect = 1.679e-53 Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 Query: 1 MSKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGDGF 80 MSKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGDGF Sbjct: 1 MSKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGDGF 80
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|553193371|ref|XP_005855762.1| (hypothetical protein NGA_0603000 [Nannochloropsis gaditana CCMP526] >gi|422293303|gb|EKU20603.1| hypothetical protein NGA_0603000 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 170.629 bits (431), Expect = 1.770e-51 Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 Query: 1 MSKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGDG 79 MSKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGDG Sbjct: 1 MSKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGDG 79
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|551647711|ref|XP_005826639.1| (hypothetical protein GUITHDRAFT_76219 [Guillardia theta CCMP2712] >gi|428170737|gb|EKX39659.1| hypothetical protein GUITHDRAFT_76219 [Guillardia theta CCMP2712]) HSP 1 Score: 102.064 bits (253), Expect = 1.848e-24 Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 0 Query: 2 SKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVG 77 +K++F++V+ S +DPE PA ELN HSP T GWQS RFCDYPQE+G F + HL ++Q+LSHQ KIA+K+ELFVG Sbjct: 3 AKLKFKLVHCSSEDPEFPATELNAHSPHTVGWQSARFCDYPQEIG-FQFSSTVHLMQLQVLSHQFKIASKLELFVG 77
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|971512455|dbj|GAQ85746.1| (Galactose-binding domain-like [Klebsormidium nitens]) HSP 1 Score: 98.9821 bits (245), Expect = 2.118e-22 Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 0 Query: 3 KIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVG 77 K+RF V ASG+DP++PA+ELN HSP T+GWQSPRFC +PQEL + LD P + ++Q+LSH+ KI+ K+E+FVG Sbjct: 8 KLRFTVESASGEDPDYPAKELNFHSPHTKGWQSPRFCKFPQEL-ILQLDKPAQVHQIQLLSHEFKISCKIEVFVG 81
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|676394003|ref|XP_009040279.1| (hypothetical protein AURANDRAFT_72373 [Aureococcus anophagefferens] >gi|323449033|gb|EGB04924.1| hypothetical protein AURANDRAFT_72373 [Aureococcus anophagefferens]) HSP 1 Score: 96.6709 bits (239), Expect = 1.360e-21 Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 0 Query: 1 MSKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGDG 79 M+K+ + V+ SG DP+ A ELNVHSP T GWQ+ RFC+YPQE+ + L +S++Q+LSHQ KIAT++ELFVG G Sbjct: 1 MAKLNYSVIACSGADPDFAATELNVHSPHTRGWQTSRFCEYPQEV-IVELARGASISQIQLLSHQHKIATRIELFVGSG 78
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|302837157|ref|XP_002950138.1| (hypothetical protein VOLCADRAFT_104552 [Volvox carteri f. nagariensis] >gi|300264611|gb|EFJ48806.1| hypothetical protein VOLCADRAFT_104552 [Volvox carteri f. nagariensis]) HSP 1 Score: 92.4337 bits (228), Expect = 3.696e-20 Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 0 Query: 3 KIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVG 77 K+RF V SG+D ++P EL HSP T GWQSPRFC YPQE+ L L T C + ++QILSH+ KIAT+VE+FVG Sbjct: 9 KLRFTVHAFSGEDTDYPVRELLFHSPQTRGWQSPRFCKYPQEIVLRLEQT-CKVQQIQILSHEYKIATRVEVFVG 82
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|923126196|ref|XP_013756565.1| (hypothetical protein AMSG_12034 [Thecamonas trahens ATCC 50062] >gi|906557835|gb|KNC51078.1| hypothetical protein AMSG_12034 [Thecamonas trahens ATCC 50062]) HSP 1 Score: 92.0485 bits (227), Expect = 5.392e-20 Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 0 Query: 2 SKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGD 78 SK++F VV SG+D EHP EL H+P T+GW+SPRFCDYP E+ + D P + ++Q SHQ +ATK+ELFVG+ Sbjct: 3 SKLKFTVVACSGEDDEHPVVELERHTPHTKGWRSPRFCDYPLEI-VLAFDAPARIRKLQFYSHQYLVATKIELFVGN 78
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|159489390|ref|XP_001702680.1| (flagellar associated protein [Chlamydomonas reinhardtii] >gi|158280702|gb|EDP06459.1| flagellar associated protein [Chlamydomonas reinhardtii]) HSP 1 Score: 91.6633 bits (226), Expect = 6.534e-20 Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 0 Query: 3 KIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVG 77 K+RF + SG+D ++P EL HSP T GWQSPRFC YPQE+ L L T C + ++QIL+H+ KIAT+VE+FVG Sbjct: 9 KLRFTIHACSGEDTDYPVRELLYHSPQTRGWQSPRFCKYPQEIVLRLEQT-CKVQQIQILAHEYKIATRVEVFVG 82
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|303279488|ref|XP_003059037.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226460197|gb|EEH57492.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 90.8929 bits (224), Expect = 1.405e-19 Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 0 Query: 2 SKIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVG 77 SK+RF V + SG+D ++PA EL+ H+P T GWQ RF +PQEL + LD P + ++QILSH+ KIATKVEL+ G Sbjct: 9 SKLRFTVAHVSGEDEDYPARELHFHTPQTRGWQCARFSKFPQEL-VLRLDHPARIHQIQILSHEYKIATKVELYTG 83
BLAST of EWM24192.1 vs. NCBI_GenBank
Match: gi|908417481|ref|XP_013070036.1| (PREDICTED: LOW QUALITY PROTEIN: centrosomal protein of 104 kDa-like [Biomphalaria glabrata]) HSP 1 Score: 89.3521 bits (220), Expect = 4.891e-19 Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 0 Query: 3 KIRFQVVYASGQDPEHPAEELNVHSPATEGWQSPRFCDYPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGD 78 K++F+V++ASGQD + A ELN HSP T+GWQS RFC YPQ++ + L+T L ++QILSHQ I TK+E FVGD Sbjct: 16 KLQFKVIHASGQDDIYRASELNHHSPLTKGWQSARFCLYPQDM-VIQLETRSRLRKIQILSHQFLIPTKIEFFVGD 90 The following BLAST results are available for this feature:
BLAST of EWM24192.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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