rna6495, rna6495 (mRNA) Nannochloropsis gaditana

Overview
Namerna6495
Unique Namerna6495
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1422
Alignment locationCM002468.1:639562..640723 +

Link to JBrowse

Properties
Property NameValue
Product2Fe-2S ferredoxin-type domain protein
Orig transcript idgnl|cribi|Naga_100253g10.9426.mrna
Orig protein idgnl|cribi|Naga_100253g10.9426
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:639562..640723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100253g10gene6275Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6495rna6495-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24195.1cds6479Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6495 ID=rna6495|Name=rna6495|organism=Nannochloropsis gaditana|type=mRNA|length=1422bp
ATGCCCGTGCACAGGATGTTCGTCCTCACGCTTTCCTCTTTATGCCTATG
GCGTGGTCTACCCTCGGCTTCTGCTTTCTTGGCCGCACGCTTCCCTTCCT
TTGCCCCACTCAGTGCCGTGTCCGCCCCTTCGATTGCCCGTCATATTTCT
GTATTCCTTCCAACAAACCGCGCCAGCATTTGCATGCTCTCATCGTCGTC
CGAGTACTTTGCGGTCATTGACGAGATGAAAGTGACGGAATTGAAGGAGC
ATCTCCGGCGCCTGAAGAAACCCGTCTCGGGCACTAAGGGGGTGCTGCAA
GAGCGCTTGAAGGAGGCTCTGACGGAGACACCCGTGCAGCTCAGCAGCAT
CACAGCCCCCACGTCACCAGAAGCGTCAGTGACGTCCGAAGGAAGTGACC
AGGGCATGGACGTGGAGGAGGAAGAGCAACTTCTGCCCCCAGCCGACCTA
GGAGATATTGAGGACGGGCCACTCGGCAATGGCGGCGGGGCCAGGGCGAG
TCCTGGGGGCCGCGCCGCCCAGTTTTCACGTGGGTACACCGAGGATGAAG
ACGCGTACGACCAGACTGGTCGAGGCGGGGGCTCCAGAAGGGGGCCGGGC
GGGAGAGCCCCGTGGAGGGCGGACGAGGAGGCGTGGGCGCATGCCTCGGA
GGAGGTGGTGGAGATCGGGCAAGAGATGGAGGCAGAAGTGATGAGTTTCT
CGGATCTGGGCATCACGGTGCGGTTGGATGGGCGGTACCGTGGCTTGATC
TACGAGGACGAGCTCGACTACCAGCGGGACCGGCAAGGACTGCGGGTAGG
GGACCGGTGCGCCGTGTACGTGCAAAAAGTCCGGCGGGACGGAAAAGTGG
ACGTGTCGTTTCGGAAGTTCGGAACTTTCCCCAAGCTGCAGGACGGTCGG
CAGGTGGTGTGGGACGCGCTCCTGGCCTCCGCGGACGGGTCGTTGCCTCT
TGGGGACCGGAGCGACAGCGAGGAGGTGGTGGCGGCCCTTGGGATCAGCA
AGAGCCAGTTCAAAGCCGCGGTGGGCATGCTCTACAAGGCGCGGCAGGTG
CAAGCCCCCGAGCCCTATCGGATAACCCTGGTGCCGGAAGAAGAGAGGGG
TGGGGAGGGAGAAGAAGGAGGAGAGGAGGGCGGGCGGGTGGGGGAGAGAG
CGGCCTCGATGCCCGCCTTTCAGGTGCGGCCTGACGGGGAGGAGGGGGGC
TGGGGCACCCGCATGGAAGGAAACTGGGACCAGAAGCGGGAGGAGGCGAA
GTGGGCGCCGACCAAGGTCTTCATCCGGGGCCTGCCGTTCTCTCTGACGG
AGGAGGACGTGCATAAGATGATGAGCAAGATCGGCGCGGTGGAACAAATA
TACACCTCCGCTGCTTGTTTGGATCCCCTTGCGAGTACAAATCTGTCAGT
GAGTTATTCGCACGCATCCTGA
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protein sequence of rna6495

>rna6495-protein ID=rna6495-protein|Name=rna6495|organism=Nannochloropsis gaditana|type=polypeptide|length=330bp
MAPCRNALTVALLTSGAFTQAFWVAPATPWLHGSRHFSKDVTAPLMATSE
TTNSNVPPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIP
LGGGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMI
CYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLD
VSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRF
DQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRL
SCRVIVGATNTPGTVRFKLMPQAPFTKKKP
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mRNA from alignment at CM002468.1:639562..640723+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6495 ID=rna6495|Name=rna6495|organism=Nannochloropsis gaditana|type=mRNA|length=1162bp|location=Sequence derived from alignment at CM002468.1:639562..640723+ (Nannochloropsis gaditana)
ATGGCACCCTGTCGGAATGCCCTCACCGTAGCCCTGCTCACGAGCGGCGC
ATTTACACAAGCTTTTTGGGTCGCGCCTGCCACACCATGGCTCCATGGCT
CCCGTCACTTCTCAAAAGACGTAACCGCGCCGCTGATGGCAACATCGGAG
ACTACCAACTCAaacgtcccccctcccttgacaCTGGAAGAAATATCGAA
CAAAATAAAATTTGAAATCACCGATCTGGATGCAGGCGCCTACGGCTTAG
AGAGCAAGGATGTAGCATACGCAGGTGAGCTACAACCATTGAACTTATAA
GTGTAGACCTGACGGGATGAGCATTTTCTAGCTGCCCCtaatctccttcc
ccctgtaAGGCAGTCCTACGTCCTCCTGGCCGCatctttccccctctacc
ccctttttctctcaCGCGACGCACATGCTTCCCCCAAAAACAGTGGAAAT
TGCCAAGGTTGACATTCccctgggagggggcggcatTGGGCTGGGGCTGG
AGGAATTACGACGGGGGCAGGACGGGCGCGGGTGCGtgctcgtctcctcc
ctacccccgGAAGGCAACGCCGCCCAAGCGGCCGGAGACGACGGGAAGAT
CCGAGTGGGGGACATGATTTGCTACCTGGGCCAAGAGCCTCGGGGCATGG
TGCGGACGGAGGGCTTGGACTTCGAGCAAACCATGGGGGCgctccgccgc
ttcctggAGACGGGCGCCCCCGCCATCACCCTGGTGCTGAAACGCCTGGT
CTTTCGGGCCTCCCTGGACGTTTCGCTCTCCTACACACCCGGCCCCGACG
AGGAGAGCCAGGGCCGCAAGGCTTGGACCCAAACGCTGCCCATGTTGGCA
GGCTCCCAGCTTCGGAAAGAGCTCCTTCGCGCTGGCTTGCCCGTGTACAG
CCAGGACACGCTGCGGTTCGACCAGCCTTACGTGACAGGGAATtgcggcg
gggaagggatcTGTGGGACCTGCCTGGTCCAGgttttggagggaaaggag
ctcttgaacgagaaggacgaggtggaggcgatggtgACCCGGAAATGGGG
AGCAGCCAACTGGCGCTTGTCCTGCCGAGTCATCGTGGGCGCCACCAACA
CGCCGGGCACCGTCCGTTTTAAATTGATGCCCCAGGCGCCCTTCACCAAG
AAGAAGCCGTGA
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Coding sequence (CDS) from alignment at CM002468.1:639562..640723+

>rna6495 ID=rna6495|Name=rna6495|organism=Nannochloropsis gaditana|type=CDS|length=1986bp|location=Sequence derived from alignment at CM002468.1:639562..640723+ (Nannochloropsis gaditana)
ATGGCACCCTGTCGGAATGCCCTCACCGTAGCCCTGCTCACGAGCGGCGC
ATTTACACAAGCTTTTTGGGTCGCGCCTGCCACACCATGGCTCCATGGCT
CCCGTCACTTCTCAAAAGACGTAACCGCGCCGCTGATGGCAACATCGGAG
ACTACCAACTCAaacgtcccccctcccttgacaCTGGAAGAAATATCGAA
CAAAATAAAATTTGAAATCACCGATCTGGATGCAGGCGCCTACGGCTTAG
AGAGCAAGGATGTAGCATACGCAGTGGAAATTGCCAAGGTTGACATTCcc
ctgggagggggcggcatTGGGCTGGGGCTGGAGGAATTACGACGGGGGCA
GGACGGGCGCGGGTGCGtgctcgtctcctccctacccccgGAAGGCAACG
CCGCCCAAGCGGCCGGAGACGACGGGAAGATCCGAGTGGGGGACATGATT
TGCTACCTGGGCCAAGAGCCTCGGGGCATGGTGCGGACGGAGGGCTTGGA
CTTCGAGCAAACCATGGGGGCgctccgccgcttcctggAGACGGGCGCCC
CCGCCATCACCCTGGTGCTGAAACGCCTGGTCTTTCGGGCCTCCCTGGAC
GTTTCGCTCTCCTACACACCCGGCCCCGACGAGGAGAGCCAGGGCCGCAA
GGCTTGGACCCAAACGCTGCCCATGTTGGCAGGCTCCCAGCTTCGGAAAG
AGCTCCTTCGCGCTGGCTTGCCCGTGTACAGCCAGGACACGCTGCGGTTC
GACCAGCCTTACGTGACAGGGAATtgcggcggggaagggatcTGTGGGAC
CTGCCTGGTCCAGgttttggagggaaaggagctcttgaacgagaaggacg
aggtggaggcgatggtgACCCGGAAATGGGGAGCAGCCAACTGGCGCTTG
TCCTGCCGAGTCATCGTGGGCGCCACCAACACGCCGGGCACCGTCCGTTT
TAAATTGATGCCCCAGGCGCCCTTCACCAAGAAGAAGCCGTGAATGGCAC
CCTGTCGGAATGCCCTCACCGTAGCCCTGCTCACGAGCGGCGCATTTACA
CAAGCTTTTTGGGTCGCGCCTGCCACACCATGGCTCCATGGCTCCCGTCA
CTTCTCAAAAGACGTAACCGCGCCGCTGATGGCAACATCGGAGACTACCA
ACTCAaacgtcccccctcccttgacaCTGGAAGAAATATCGAACAAAATA
AAATTTGAAATCACCGATCTGGATGCAGGCGCCTACGGCTTAGAGAGCAA
GGATGTAGCATACGCAGTGGAAATTGCCAAGGTTGACATTCccctgggag
ggggcggcatTGGGCTGGGGCTGGAGGAATTACGACGGGGGCAGGACGGG
CGCGGGTGCGtgctcgtctcctccctacccccgGAAGGCAACGCCGCCCA
AGCGGCCGGAGACGACGGGAAGATCCGAGTGGGGGACATGATTTGCTACC
TGGGCCAAGAGCCTCGGGGCATGGTGCGGACGGAGGGCTTGGACTTCGAG
CAAACCATGGGGGCgctccgccgcttcctggAGACGGGCGCCCCCGCCAT
CACCCTGGTGCTGAAACGCCTGGTCTTTCGGGCCTCCCTGGACGTTTCGC
TCTCCTACACACCCGGCCCCGACGAGGAGAGCCAGGGCCGCAAGGCTTGG
ACCCAAACGCTGCCCATGTTGGCAGGCTCCCAGCTTCGGAAAGAGCTCCT
TCGCGCTGGCTTGCCCGTGTACAGCCAGGACACGCTGCGGTTCGACCAGC
CTTACGTGACAGGGAATtgcggcggggaagggatcTGTGGGACCTGCCTG
GTCCAGgttttggagggaaaggagctcttgaacgagaaggacgaggtgga
ggcgatggtgACCCGGAAATGGGGAGCAGCCAACTGGCGCTTGTCCTGCC
GAGTCATCGTGGGCGCCACCAACACGCCGGGCACCGTCCGTTTTAAATTG
ATGCCCCAGGCGCCCTTCACCAAGAAGAAGCCGTGA
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Synonyms
Publications