EWM24195.1, cds6479 (CDS) Nannochloropsis gaditana

Overview
NameEWM24195.1
Unique Namecds6479
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:639562..639835 +
Alignment locationCM002468.1:640005..640723 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24195.1
Product2Fe-2S ferredoxin-type domain protein
Orig transcript idgnl|cribi|Naga_100253g10.9426.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:639562..639835 +
CM002468.1supercontigCM002468.1:640005..640723 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005515protein binding
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR012675Beta-grasp_dom
IPR0010412Fe-2S_ferredoxin-type
Homology
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|553193342|ref|XP_005855756.1| (hypothetical protein NGA_0602310 [Nannochloropsis gaditana CCMP526] >gi|422293297|gb|EKU20597.1| hypothetical protein NGA_0602310 [Nannochloropsis gaditana CCMP526] >gi|585105583|gb|EWM24195.1| 2Fe-2S ferredoxin-type domain protein [Nannochloropsis gaditana])

HSP 1 Score: 675.241 bits (1741), Expect = 0.000e+0
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query:    1 MAPCRNALTVALLTSGAFTQAFWVAPATPWLHGSRHFSKDVTAPLMATSETTNSNVPPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGGGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQAPFTKKKP 330
            MAPCRNALTVALLTSGAFTQAFWVAPATPWLHGSRHFSKDVTAPLMATSETTNSNVPPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGGGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQAPFTKKKP
Sbjct:    1 MAPCRNALTVALLTSGAFTQAFWVAPATPWLHGSRHFSKDVTAPLMATSETTNSNVPPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGGGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQAPFTKKKP 330          
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|299472521|emb|CBN77306.1| (Ferredoxin [Ectocarpus siliculosus])

HSP 1 Score: 198.364 bits (503), Expect = 1.763e-57
Identity = 120/270 (44.44%), Postives = 154/270 (57.04%), Query Frame = 0
Query:   57 PPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGGGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAM-VTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQAPF 325
            P  LTL+ +  ++  E      G  GLESKD  YA+E+ KV +      +G+ LEE+ RG DGRG VLV+ L P GNA  +    GKI VGD +C  G E   M R E LD++QT+  L  F E     I LV+KRLV R S++V      G           ++   + AGS LR E++R  +PVY   T RFDQPY TGNC GEG CGTC V+V +G +LL   D+ E M ++R      WRLSC+VIVG  N  GTVR K +PQA +
Sbjct:   81 PSGLTLDGVYKRLTLETQSRADGVVGLESKDTDYAIEVVKVQMQRKPS-LGMQLEEVARGGDGRGLVLVAGLEPGGNAEAS----GKICVGDTLCSAGIEG-DMSRVEALDWDQTVSVLGSFAEE--SEIVLVIKRLVKRESINVQFELPSG-----------SRDHEIKAGSNLRGEMIRLDVPVYDPRTKRFDQPYATGNCAGEGTCGTCFVEVQQGADLLTSPDQEELMLLSRGNLPVRWRLSCKVIVGKENKAGTVRLKAVPQAEW 331          
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|219124243|ref|XP_002182418.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406379|gb|EEC46319.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 178.333 bits (451), Expect = 4.066e-50
Identity = 106/264 (40.15%), Postives = 147/264 (55.68%), Query Frame = 0
Query:   62 LEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGGGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMIC-YLGQEPRGMVRTEGLDFEQTMGALRRFLETGAP-AITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQA 323
            L +++ K K EI DLD G +G +SKD  Y +E+   +I +G  G+GL L E+    DGRG V+VS +   GNAA+A  +   I VGD I   +  +     R    ++++T+ A+ R  E+     ITL L RL+ R  + V +    G            Q +  LAG  LR+  +R  L +Y + T RFDQP+ TGNCGG+G+CGTCLV VL+G +LLN KD  E  +T K    +WR SCR  VG  N  GT+R  L PQ+
Sbjct:   49 LMDLAQKFKLEIFDLDEGLFGFDSKDNRYGLEVVHTNIDVGNDGLGLVLTEMAGSPDGRGLVMVSKI--TGNAAKA--NPQAIHVGDTITGVMANDGVLKERVTAFNYDKTVEAIGRAKESSTDGTITLELNRLIKRLPVRVEIDDGSG----------HVQVIEALAGENLRRMFMRKQLKLYDERTRRFDQPFNTGNCGGDGVCGTCLVNVLQGMDLLNPKDSHEVFIT-KGRPPSWRASCRTTVGFNNVGGTLRISLHPQS 297          
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|219119177|ref|XP_002180355.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408612|gb|EEC48546.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 87.4261 bits (215), Expect = 9.249e-16
Identity = 80/293 (27.30%), Postives = 131/293 (44.71%), Query Frame = 0
Query:   55 NVPPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIP-LGGGGIGLGLEELRRG-QDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPR-----------GM----------VRTEGLDFEQTMGALRRF--LETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQ 322
            N+P    LEE +  +       + G Y        + V++ +V+ P L   G+G+ L EL  G +D  G  +V  L   G+A     ++  I  GD I  +                GM          V TE L ++ T+ A+     + +      L LKRL  +  ++++L Y P  +E           L + AG  LR+ +L  G+ +    + RFD   + G+CG EG C TC V++++G  L N + + EA +  K   ANWR+SC+ IVG     G++  ++ P+
Sbjct:   73 NLPFETVLEEWTANMVPATPMQEEGIYLGAKNSREHLVDVVQVEFPRLQDMGLGIQLMELAGGREDSLGITIVEGLVEGGSA-----ENSDILPGDCITKVAVRKSSSTSAPVDITAGMDLTETVEESAVTTECLGYDATVSAIVSLPPVSSEGETFVLTLKRLRRKPKINLTLQYPPEMNEPDV-------KLELFAGENLRRSMLVKGVKLNDALSRRFDSGGI-GDCGAEGTCATCAVKIVQGGNLCNPRAQQEAQILVK--RANWRMSCKTIVGYGMKEGSMTVRVSPR 350          
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|922863243|gb|KOO30718.1| (hypothetical protein Ctob_006999 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 86.6557 bits (213), Expect = 2.012e-15
Identity = 77/257 (29.96%), Postives = 124/257 (48.25%), Query Frame = 0
Query:   78 AGAYGLESKDVAYAVEI-----------AKVDIPLGGGGIGLGLEELRRGQDGR-GCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQ 322
            +G +GL+    A +VE+            +  +P  G G+G+ LEEL  G DG+ G V+V S+    NAA A+     I  GD I  +G      +  EGL ++QT+  L   L+   P I L L+RL     + V+L +        +G +A  + L +L G  LR+ +L  G+ +      RFD  + TG+CGGEG C TC ++V +G + L+ +   E  +  K     WRL+C+  +        +  ++ P+
Sbjct:  146 SGLWGLQRNRNADSVELIAKEPGWRLAEVRTLVPRNGPGLGIALEEL--GSDGQSGLVIVESVVAGSNAASASN---PILPGDAIVAVGPASES-ITVEGLTYDQTVAVLGS-LDPTRP-IELTLRRLERLPRVSVTLQFP------QEGGRA-DEMLELLPGMPLRRSILSRGIKLNDPLARRFDAGWGTGDCGGEGTCCTCALEVTKGIQALSVQASQERQMLAK--HPTWRLACKASIAELKEDCELVLRVAPR 385          
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|1072231456|gb|OEU16188.1| (hypothetical protein FRACYDRAFT_268912 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 84.7297 bits (208), Expect = 5.648e-15
Identity = 80/265 (30.19%), Postives = 121/265 (45.66%), Query Frame = 0
Query:   77 DAGAYGLESKDVA-YAVEIAKVDIPLG-GGGIGLGLEELRRGQ-DGRGCVLVSSLPPEGNAAQAA---GD----------DGKIRVGDMICYLGQEPRGMVRTEGLDFEQT---MGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQ 322
            + G   LE+KDV    V+   V+ P   GGG+G+ L EL  G+ DG G  ++S L   G+A Q+    GD            +I  GD      +E    V TE L ++ T   +G L    +       L +KRL  R  + V L Y P  +E+ +       T+ M AG  LR+ +L  G+ +      RFD     GNCG  G+C TC V V  G ++LN +   E  + ++      RL+C+ +VG     G +  ++ P+
Sbjct:   81 NKGKIRLEAKDVVENYVDTVIVNFPRNDGGGMGIELSELAGGRSDGIGITIISGLVEGGSAEQSELFPGDSLASVTLIRRQRQITTGDKEPISEKEEEWSVSTECLAYDDTVNAIGTLPTIKQGFEDVFVLKIKRLRRRPKVSVKLQYPPNQNEDDE-------TIEMYAGENLRQGMLIRGVKLNDPLAQRFDTKQ-DGNCGAGGLCRTCSVVVSSGADVLNPQRVAEEQMMKQ--NPRCRLACKAVVGYGMKEGEMIIRVNPK 335          
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|224010703|ref|XP_002294309.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970326|gb|EED88664.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 80.4925 bits (197), Expect = 1.801e-13
Identity = 67/233 (28.76%), Postives = 108/233 (46.35%), Query Frame = 0
Query:  104 GGIGLGLEELRRG-QDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQE-----------PRGMVRTEGLDFEQTMGALRRFL--ETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQ 322
            GG+GL L E+  G +DG G  +V  +   GNA  +      I  GD I  +  +            R  V TE L ++ T+ AL       +    I L +KR+  +  ++V L Y P  +E           + + AG  LR+ +L  G+ +  + + RFD    TG+CG +G C TC+V V +G ELL+     E+ +  K     WR++C+ +VG     G +  ++ P+
Sbjct:  113 GGLGLLLTEIAGGREDGVGITIVEQVLEGGNAMGSG-----IMAGDSIVAIAVDRNSGGGLNDKLERIGVATECLGYDATIEALTSLPPPTSSEDEIILTVKRIRKQPKVNVKLQYPPYLNEPDT-------YIELFAGENLRRAMLTRGIKLNDKLSERFDSGG-TGDCGADGTCATCVVSVTKGGELLSPMKMTESQILSK--KPRWRMACKTVVGYGMMEGDLTIQVNPR 330          
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|1210520327|dbj|GAX20758.1| (hypothetical protein FisN_7Hh069 [Fistulifera solaris])

HSP 1 Score: 78.9518 bits (193), Expect = 5.181e-13
Identity = 68/212 (32.08%), Postives = 102/212 (48.11%), Query Frame = 0
Query:  117 QDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLG----QEPRGM-VRTEGLDFEQTMGALRRF--LETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMP 321
            +DG G  +VS L   G A     D  +I VGD I  L     Q+   + V TE L ++ T+ A+      E G  ++ + LKRL  +  + V++ Y P   E+         T+ + +G  LR+ +L  G+ +      RFD    TG+CG EG CGTC V +L G+ELL+   + E  + R      WRLSC+  VG     G +  ++ P
Sbjct:  130 EDGLGITVVSGLVEGGCA-----DGSEIMVGDSISKLQVIDTQDNEIVSVSTECLSYDGTVDAVLSLPPAEDGQ-SMVITLKRLRRKPKVQVTIQYPPSMKEKDV-------TIELFSGENLRRSMLIKGIKLNDPLARRFDSGG-TGSCGAEGTCGTCSVSILRGQELLSPPGQTEQQMFRN--NPRWRLSCKARVGYGLREGELVVRVNP 325          
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|1210529605|dbj|GAX11699.1| (hypothetical protein FisN_7Lh069 [Fistulifera solaris])

HSP 1 Score: 78.1814 bits (191), Expect = 1.102e-12
Identity = 65/211 (30.81%), Postives = 99/211 (46.92%), Query Frame = 0
Query:  117 QDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYL----GQEPRGM-VRTEGLDFEQTMGALRRFLETG-APAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMP 321
            +DG G  +VS L   G A     D  +I VGD I  L     QE   + V TE L ++ T+ A+          ++ + LKRL  +  + V++ Y P   E          T+ + +G  LR+ +L  G+ +      RFD    TG+CG EG CGTC + ++ G+ELL+   + E  + R      WRLSC+  VG     G +  ++ P
Sbjct:  132 EDGLGITVVSGLVEGGCA-----DGSEIMVGDSISKLQVVDAQENEIVSVSTECLSYDGTVDAILSLPPAADGQSMVITLKRLRRKPKVQVTIQYPPSMKENDV-------TIELFSGENLRRSMLIKGIKLNDPLARRFDIGG-TGSCGAEGTCGTCSISIIRGQELLSPPGQTEQQMFRN--NPRWRLSCKARVGYGLREGELVVRVNP 327          
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|1210518405|dbj|GAX22682.1| (hypothetical protein FisN_4Hh206 [Fistulifera solaris])

HSP 1 Score: 78.1814 bits (191), Expect = 1.196e-12
Identity = 80/287 (27.87%), Postives = 125/287 (43.55%), Query Frame = 0
Query:   55 NVPPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLG-GGGIGLGLEELRRGQ-DGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLG--------QEPRGMVR-----TEGLDFEQTMGALRRFLETGAPAI----TLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQ 322
            N+PP   + E       +  + +     L  +   Y ++   ++ P     G+GL L EL  G+ DG G  +VS    E + A A+ +   I  GD + ++G         E + +V+     TE LD+E T+ A+       A        L +KR+  +  + V L Y P   EE         TL + AG  LR+ +L  G+ +      RFD    +GNCG  G+C TC V V  G +LLN +   E  +     +  WRL+C+ IVG     G +  ++ P 
Sbjct:   63 NIPPDEIMGEWKANF-VQKANENTAKVALACQSPEYFIDSLTINFPRNLEEGLGLSLVELAGGRGDGLGITIVS----EVSGAAASAEGASILYGDSLAFVGLVRTAKKLSEGKSVVKEYTVATECLDYEATVEAISSLPSANADEFEDTWVLKVKRIRRKPKISVRLLYPPSQKEEDV-------TLELFAGENLRQGMLVRGIKLNDPLAKRFDTKN-SGNCGAGGLCRTCSVVVQSGMDLLNPQRLSEKQMLAD--SPRWRLACKAIVGYGMKEGEMTIRVNPN 334          
The following BLAST results are available for this feature:
BLAST of EWM24195.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553193342|ref|XP_005855756.1|0.000e+0100.00hypothetical protein NGA_0602310 [Nannochloropsis ... [more]
gi|299472521|emb|CBN77306.1|1.763e-5744.44Ferredoxin [Ectocarpus siliculosus][more]
gi|219124243|ref|XP_002182418.1|4.066e-5040.15predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|219119177|ref|XP_002180355.1|9.249e-1627.30predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|922863243|gb|KOO30718.1|2.012e-1529.96hypothetical protein Ctob_006999 [Chrysochromulina... [more]
gi|1072231456|gb|OEU16188.1|5.648e-1530.19hypothetical protein FRACYDRAFT_268912 [Fragilario... [more]
gi|224010703|ref|XP_002294309.1|1.801e-1328.76predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210520327|dbj|GAX20758.1|5.181e-1332.08hypothetical protein FisN_7Hh069 [Fistulifera sola... [more]
gi|1210529605|dbj|GAX11699.1|1.102e-1230.81hypothetical protein FisN_7Lh069 [Fistulifera sola... [more]
gi|1210518405|dbj|GAX22682.1|1.196e-1227.87hypothetical protein FisN_4Hh206 [Fistulifera sola... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6495rna6495Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications