EWM24195.1, cds6479 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|553193342|ref|XP_005855756.1| (hypothetical protein NGA_0602310 [Nannochloropsis gaditana CCMP526] >gi|422293297|gb|EKU20597.1| hypothetical protein NGA_0602310 [Nannochloropsis gaditana CCMP526] >gi|585105583|gb|EWM24195.1| 2Fe-2S ferredoxin-type domain protein [Nannochloropsis gaditana]) HSP 1 Score: 675.241 bits (1741), Expect = 0.000e+0 Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query: 1 MAPCRNALTVALLTSGAFTQAFWVAPATPWLHGSRHFSKDVTAPLMATSETTNSNVPPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGGGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQAPFTKKKP 330
MAPCRNALTVALLTSGAFTQAFWVAPATPWLHGSRHFSKDVTAPLMATSETTNSNVPPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGGGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQAPFTKKKP
Sbjct: 1 MAPCRNALTVALLTSGAFTQAFWVAPATPWLHGSRHFSKDVTAPLMATSETTNSNVPPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGGGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQAPFTKKKP 330
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|299472521|emb|CBN77306.1| (Ferredoxin [Ectocarpus siliculosus]) HSP 1 Score: 198.364 bits (503), Expect = 1.763e-57 Identity = 120/270 (44.44%), Postives = 154/270 (57.04%), Query Frame = 0
Query: 57 PPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGGGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAM-VTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQAPF 325
P LTL+ + ++ E G GLESKD YA+E+ KV + +G+ LEE+ RG DGRG VLV+ L P GNA + GKI VGD +C G E M R E LD++QT+ L F E I LV+KRLV R S++V G ++ + AGS LR E++R +PVY T RFDQPY TGNC GEG CGTC V+V +G +LL D+ E M ++R WRLSC+VIVG N GTVR K +PQA +
Sbjct: 81 PSGLTLDGVYKRLTLETQSRADGVVGLESKDTDYAIEVVKVQMQRKPS-LGMQLEEVARGGDGRGLVLVAGLEPGGNAEAS----GKICVGDTLCSAGIEG-DMSRVEALDWDQTVSVLGSFAEE--SEIVLVIKRLVKRESINVQFELPSG-----------SRDHEIKAGSNLRGEMIRLDVPVYDPRTKRFDQPYATGNCAGEGTCGTCFVEVQQGADLLTSPDQEELMLLSRGNLPVRWRLSCKVIVGKENKAGTVRLKAVPQAEW 331
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|219124243|ref|XP_002182418.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406379|gb|EEC46319.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 178.333 bits (451), Expect = 4.066e-50 Identity = 106/264 (40.15%), Postives = 147/264 (55.68%), Query Frame = 0
Query: 62 LEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGGGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMIC-YLGQEPRGMVRTEGLDFEQTMGALRRFLETGAP-AITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQA 323
L +++ K K EI DLD G +G +SKD Y +E+ +I +G G+GL L E+ DGRG V+VS + GNAA+A + I VGD I + + R ++++T+ A+ R E+ ITL L RL+ R + V + G Q + LAG LR+ +R L +Y + T RFDQP+ TGNCGG+G+CGTCLV VL+G +LLN KD E +T K +WR SCR VG N GT+R L PQ+
Sbjct: 49 LMDLAQKFKLEIFDLDEGLFGFDSKDNRYGLEVVHTNIDVGNDGLGLVLTEMAGSPDGRGLVMVSKI--TGNAAKA--NPQAIHVGDTITGVMANDGVLKERVTAFNYDKTVEAIGRAKESSTDGTITLELNRLIKRLPVRVEIDDGSG----------HVQVIEALAGENLRRMFMRKQLKLYDERTRRFDQPFNTGNCGGDGVCGTCLVNVLQGMDLLNPKDSHEVFIT-KGRPPSWRASCRTTVGFNNVGGTLRISLHPQS 297
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|219119177|ref|XP_002180355.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408612|gb|EEC48546.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 87.4261 bits (215), Expect = 9.249e-16 Identity = 80/293 (27.30%), Postives = 131/293 (44.71%), Query Frame = 0
Query: 55 NVPPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIP-LGGGGIGLGLEELRRG-QDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPR-----------GM----------VRTEGLDFEQTMGALRRF--LETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQ 322
N+P LEE + + + G Y + V++ +V+ P L G+G+ L EL G +D G +V L G+A ++ I GD I + GM V TE L ++ T+ A+ + + L LKRL + ++++L Y P +E L + AG LR+ +L G+ + + RFD + G+CG EG C TC V++++G L N + + EA + K ANWR+SC+ IVG G++ ++ P+
Sbjct: 73 NLPFETVLEEWTANMVPATPMQEEGIYLGAKNSREHLVDVVQVEFPRLQDMGLGIQLMELAGGREDSLGITIVEGLVEGGSA-----ENSDILPGDCITKVAVRKSSSTSAPVDITAGMDLTETVEESAVTTECLGYDATVSAIVSLPPVSSEGETFVLTLKRLRRKPKINLTLQYPPEMNEPDV-------KLELFAGENLRRSMLVKGVKLNDALSRRFDSGGI-GDCGAEGTCATCAVKIVQGGNLCNPRAQQEAQILVK--RANWRMSCKTIVGYGMKEGSMTVRVSPR 350
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|922863243|gb|KOO30718.1| (hypothetical protein Ctob_006999 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 86.6557 bits (213), Expect = 2.012e-15 Identity = 77/257 (29.96%), Postives = 124/257 (48.25%), Query Frame = 0
Query: 78 AGAYGLESKDVAYAVEI-----------AKVDIPLGGGGIGLGLEELRRGQDGR-GCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQ 322
+G +GL+ A +VE+ + +P G G+G+ LEEL G DG+ G V+V S+ NAA A+ I GD I +G + EGL ++QT+ L L+ P I L L+RL + V+L + +G +A + L +L G LR+ +L G+ + RFD + TG+CGGEG C TC ++V +G + L+ + E + K WRL+C+ + + ++ P+
Sbjct: 146 SGLWGLQRNRNADSVELIAKEPGWRLAEVRTLVPRNGPGLGIALEEL--GSDGQSGLVIVESVVAGSNAASASN---PILPGDAIVAVGPASES-ITVEGLTYDQTVAVLGS-LDPTRP-IELTLRRLERLPRVSVTLQFP------QEGGRA-DEMLELLPGMPLRRSILSRGIKLNDPLARRFDAGWGTGDCGGEGTCCTCALEVTKGIQALSVQASQERQMLAK--HPTWRLACKASIAELKEDCELVLRVAPR 385
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|1072231456|gb|OEU16188.1| (hypothetical protein FRACYDRAFT_268912 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 84.7297 bits (208), Expect = 5.648e-15 Identity = 80/265 (30.19%), Postives = 121/265 (45.66%), Query Frame = 0
Query: 77 DAGAYGLESKDVA-YAVEIAKVDIPLG-GGGIGLGLEELRRGQ-DGRGCVLVSSLPPEGNAAQAA---GD----------DGKIRVGDMICYLGQEPRGMVRTEGLDFEQT---MGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQ 322
+ G LE+KDV V+ V+ P GGG+G+ L EL G+ DG G ++S L G+A Q+ GD +I GD +E V TE L ++ T +G L + L +KRL R + V L Y P +E+ + T+ M AG LR+ +L G+ + RFD GNCG G+C TC V V G ++LN + E + ++ RL+C+ +VG G + ++ P+
Sbjct: 81 NKGKIRLEAKDVVENYVDTVIVNFPRNDGGGMGIELSELAGGRSDGIGITIISGLVEGGSAEQSELFPGDSLASVTLIRRQRQITTGDKEPISEKEEEWSVSTECLAYDDTVNAIGTLPTIKQGFEDVFVLKIKRLRRRPKVSVKLQYPPNQNEDDE-------TIEMYAGENLRQGMLIRGVKLNDPLAQRFDTKQ-DGNCGAGGLCRTCSVVVSSGADVLNPQRVAEEQMMKQ--NPRCRLACKAVVGYGMKEGEMIIRVNPK 335
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|224010703|ref|XP_002294309.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970326|gb|EED88664.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 80.4925 bits (197), Expect = 1.801e-13 Identity = 67/233 (28.76%), Postives = 108/233 (46.35%), Query Frame = 0
Query: 104 GGIGLGLEELRRG-QDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQE-----------PRGMVRTEGLDFEQTMGALRRFL--ETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQ 322
GG+GL L E+ G +DG G +V + GNA + I GD I + + R V TE L ++ T+ AL + I L +KR+ + ++V L Y P +E + + AG LR+ +L G+ + + + RFD TG+CG +G C TC+V V +G ELL+ E+ + K WR++C+ +VG G + ++ P+
Sbjct: 113 GGLGLLLTEIAGGREDGVGITIVEQVLEGGNAMGSG-----IMAGDSIVAIAVDRNSGGGLNDKLERIGVATECLGYDATIEALTSLPPPTSSEDEIILTVKRIRKQPKVNVKLQYPPYLNEPDT-------YIELFAGENLRRAMLTRGIKLNDKLSERFDSGG-TGDCGADGTCATCVVSVTKGGELLSPMKMTESQILSK--KPRWRMACKTVVGYGMMEGDLTIQVNPR 330
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|1210520327|dbj|GAX20758.1| (hypothetical protein FisN_7Hh069 [Fistulifera solaris]) HSP 1 Score: 78.9518 bits (193), Expect = 5.181e-13 Identity = 68/212 (32.08%), Postives = 102/212 (48.11%), Query Frame = 0
Query: 117 QDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLG----QEPRGM-VRTEGLDFEQTMGALRRF--LETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMP 321
+DG G +VS L G A D +I VGD I L Q+ + V TE L ++ T+ A+ E G ++ + LKRL + + V++ Y P E+ T+ + +G LR+ +L G+ + RFD TG+CG EG CGTC V +L G+ELL+ + E + R WRLSC+ VG G + ++ P
Sbjct: 130 EDGLGITVVSGLVEGGCA-----DGSEIMVGDSISKLQVIDTQDNEIVSVSTECLSYDGTVDAVLSLPPAEDGQ-SMVITLKRLRRKPKVQVTIQYPPSMKEKDV-------TIELFSGENLRRSMLIKGIKLNDPLARRFDSGG-TGSCGAEGTCGTCSVSILRGQELLSPPGQTEQQMFRN--NPRWRLSCKARVGYGLREGELVVRVNP 325
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|1210529605|dbj|GAX11699.1| (hypothetical protein FisN_7Lh069 [Fistulifera solaris]) HSP 1 Score: 78.1814 bits (191), Expect = 1.102e-12 Identity = 65/211 (30.81%), Postives = 99/211 (46.92%), Query Frame = 0
Query: 117 QDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYL----GQEPRGM-VRTEGLDFEQTMGALRRFLETG-APAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMP 321
+DG G +VS L G A D +I VGD I L QE + V TE L ++ T+ A+ ++ + LKRL + + V++ Y P E T+ + +G LR+ +L G+ + RFD TG+CG EG CGTC + ++ G+ELL+ + E + R WRLSC+ VG G + ++ P
Sbjct: 132 EDGLGITVVSGLVEGGCA-----DGSEIMVGDSISKLQVVDAQENEIVSVSTECLSYDGTVDAILSLPPAADGQSMVITLKRLRRKPKVQVTIQYPPSMKENDV-------TIELFSGENLRRSMLIKGIKLNDPLARRFDIGG-TGSCGAEGTCGTCSISIIRGQELLSPPGQTEQQMFRN--NPRWRLSCKARVGYGLREGELVVRVNP 327
BLAST of EWM24195.1 vs. NCBI_GenBank
Match: gi|1210518405|dbj|GAX22682.1| (hypothetical protein FisN_4Hh206 [Fistulifera solaris]) HSP 1 Score: 78.1814 bits (191), Expect = 1.196e-12 Identity = 80/287 (27.87%), Postives = 125/287 (43.55%), Query Frame = 0
Query: 55 NVPPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLG-GGGIGLGLEELRRGQ-DGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLG--------QEPRGMVR-----TEGLDFEQTMGALRRFLETGAPAI----TLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQ 322
N+PP + E + + + L + Y ++ ++ P G+GL L EL G+ DG G +VS E + A A+ + I GD + ++G E + +V+ TE LD+E T+ A+ A L +KR+ + + V L Y P EE TL + AG LR+ +L G+ + RFD +GNCG G+C TC V V G +LLN + E + + WRL+C+ IVG G + ++ P
Sbjct: 63 NIPPDEIMGEWKANF-VQKANENTAKVALACQSPEYFIDSLTINFPRNLEEGLGLSLVELAGGRGDGLGITIVS----EVSGAAASAEGASILYGDSLAFVGLVRTAKKLSEGKSVVKEYTVATECLDYEATVEAISSLPSANADEFEDTWVLKVKRIRRKPKISVRLLYPPSQKEEDV-------TLELFAGENLRQGMLVRGIKLNDPLAKRFDTKN-SGNCGAGGLCRTCSVVVQSGMDLLNPQRLSEKQMLAD--SPRWRLACKAIVGYGMKEGEMTIRVNPN 334 The following BLAST results are available for this feature:
BLAST of EWM24195.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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