rna6494, rna6494 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6494
Unique Name	rna6494
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2367
Alignment location	CM002468.1:637040..639539 +

Link to JBrowse

Properties


Property Name	Value
Product	rna binding s1
Orig transcript id	gnl\|cribi\|Naga_100253g9.9427.mrna
Orig protein id	gnl\|cribi\|Naga_100253g9.9427
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:637040..639539 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100253g9	gene6274	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6494	rna6494-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24196.1	cds6478	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:637040..639539+
coding sequence from alignment at CM002468.1:637040..639539+

mRNA sequence

>rna6494 ID=rna6494|Name=rna6494|organism=Nannochloropsis gaditana|type=mRNA|length=2367bp
TCGACAACAAACTTCAACGCTGATCTTGCGCCGCCTCAGTTACACCCCCA
GAGGCTGGCACACCGTGCCGTAGAAAGCAGTCGAGGATCGATAAATACGA
TACACAAGAGGCTCATATTGACATGTCCAGAGTGTATGGTGTCGTGCGAT
GGAAATTATTGTTGGTTTCGGGGGAACCCCCCTTAGTTCGACCTCCCCCG
CGGGTCGTGTTCTTCCTGCCTCCATGTCCACAACGCTCAGCCTTTTCATT
ATGTATTGCACAAGCCAAGACAGCAATATAATGGCAAGATGTCTCAAAAG
GCAGTTTCCTCATTTTGGGCTCTAATGCGGCGCTCTTTCCTCGGCGTAGC
CCTTTTGGGTCTAGTGGCTTGCTCATTTTTGTCAAGGGTGCAGTGCGCGT
TGGCTTGGTCACGACCTGTCTCTTTTGAGGTCCTCTCTGACAAGCTTCGA
GCGCCTATCTTATCACCCAGTTTACGACTTCACTACATTGCTAGTGATCA
GGCGCCCTTCTCATTTTCCACGCGGCTGTTCAGCAGCAGCACCAACGCCG
TGCCCCTGGCAGTGTCCTCCTCCCCGACGCTCCAGGGGTCCGGGAGGGGG
ATCGTCTTTCCCGATGGCCGAGTTCTCTCTTTCGGATTCAAGCCCCGACC
CAGGATCAGCCGCGTCGCTCTCCAAAGCACCGCCGTTTTCCTGGCAATCG
CACGTCGCATGCTCGTACCCTTTAAGAAATGGAGGTGGCATATCACTGGA
CTGCCGTACTCCCACCTCACAAGCCCCCTCATCTCACTCGCATTCGTGCT
CTTGGAGGCCTATGTCTACCTCGTCCCACTACGACAGCTCCAACTGCAAC
TTTTCTACGCCCCCTCCCTGGTCCCTCCGGAGATGCTTCGATTCCCTACC
TCTCAATTTCGAACTCTATCTGCGGAGGACCTTCCGTCTTCCTCCCCCCG
ACTGCCCTCCTCCCCTCCTCCCTCATCCCCCATCCTTAAGCTCCACGCGC
TCGTACACCGGGAAGGGCCCGGCCTCGGTGCTCCCTCTTCGACGTCCCGC
TCCAGGAGCCGAGGGGCCAGGTACCTCGTCCACTGCAACCATGGATTTGG
CGCGAACGCCTTCTCTTTCGAGCCCGTCCTCGCCCCCCTGGCCCGCCTTC
TCGGTCGGACGCATCCAGCCCTGGCCGTTGCGCACGATGCGCCGGGGTTC
GGGCTTACCGAGGTGCCCAAGGAAGGAGGGAGGGAAAACGGGGCGGGAGG
AGGGGAAGGTGAGCTGTTCACTTTCGAGCACAATGCCCGGTTGGGGGGGA
GGCTGATGGAGGAGTTAGGACGAGAGGGTGAGAGGGACGGCGGGAAAGGG
ATGGCGGAGGAAGCGGACGAGGGAGGGGAGCGTCGTGTGTTCCTCGGTCA
CTCGATGGGGGCCTTGACATCGGCCTACATGGCCGTACGCCACGTGCAGC
AGGAGGGAGGCGGGGATGGCGGGAGAGAGGCAGAAAGCGGCGTCACTGCT
CCTGTCACGCTTGTCATGATTGCCCCCGCCATCATGCCTATGCGGCAATC
GCCTTCACGGCTGCCTCCGGCTGGCCGTTTCTTTTTGGGACGCTTATTCC
CCGAACGCGTCGCCCGTTACATTTTTCGAAAAACCGGTCCTGCACTCCGA
GCCTCTCTCCTCTTCTTGACCGCGTCATTTCTCCGGGCATTGTGTTATTC
CGACAAATTCTGGATGGACGGTCTGAGCCTCGCCTGGGGTGACGGCGGCC
CTCCCCCTCCTTCGACGGTAGCGCACTACAGGCTTCCGAGCTTGAAGGCT
GGGTGGGAGGGAGGGTTGAGCAGGTTCGTCCTCGCCCCGCTGTTCGCGGG
TAGAAGGAGGAAAGAGGAACCCGCAGTGGGAGAGGGGAGGAATGGGGAGA
AGGGTGATGTGCTCAAGGCACTGGCGAGCGGGGTGAAGGAAGGAAGGTTG
CGCGTGTTGCTAGTGCATGGTGAGAGGGACCGCGTGGTCCCCCTCTCGAA
TACCCGGAGGTTGGCGGCGGCGTTAAGAGGTCAGGTCGGGGAGGGGGGAG
GGAGAGAGGGAGGGGTGGAGGTGGTGGAATTGGAGGGCGTGGGACATGTG
CCGCATGAGGAGGTTCCGGAGAGGTTTGTGCAGGCAGTCATGGACTACTT
GAGGAAGGAAGAAGAGGAGGGGCAGGAGGGAGGAGAAGAAGAAGTCAATG
GGCGAGGCAAGGCCTGAAAGAAATTGGAGCAATAGCATGGCGGCCAAGAC
GACGGACACAATGGCGCGGCGCTAATGTATATATCAACTTCCACATTCGG
ACATCTCTCACTCTCCGTCGTCAAAACCCTGTGCTTTCGCCTATAATTCG
TTGTGACGCCCGCCTTT

protein sequence of rna6494

>rna6494-protein ID=rna6494-protein|Name=rna6494|organism=Nannochloropsis gaditana|type=polypeptide|length=473bp
MPVHRMFVLTLSSLCLWRGLPSASAFLAARFPSFAPLSAVSAPSIARHIS
VFLPTNRASICMLSSSSEYFAVIDEMKVTELKEHLRRLKKPVSGTKGVLQ
ERLKEALTETPVQLSSITAPTSPEASVTSEGSDQGMDVEEEEQLLPPADL
GDIEDGPLGNGGGARASPGGRAAQFSRGYTEDEDAYDQTGRGGGSRRGPG
GRAPWRADEEAWAHASEEVVEIGQEMEAEVMSFSDLGITVRLDGRYRGLI
YEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGR
QVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKARQV
QAPEPYRITLVPEEERGGEGEEGGEEGGRVGERAASMPAFQVRPDGEEGG
WGTRMEGNWDQKREEAKWAPTKVFIRGLPFSLTEEDVHKMMSKIGAVEQI
YTSAACLDPLASTNLSVSYSHAS

mRNA from alignment at CM002468.1:637040..639539+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6494 ID=rna6494|Name=rna6494|organism=Nannochloropsis gaditana|type=mRNA|length=2500bp|location=Sequence derived from alignment at CM002468.1:637040..639539+ (Nannochloropsis gaditana)
ATGCCCGTGCACAGGATGTTCGTCCTCACGCTTTCCTCTTTATGCCTATG
GCGTGGTCTACCCTCGGCTTCTGCTTTCTTGGCCGcacgcttcccttcct
ttgccccaCTCAGTGCCGTGTCCGCCCCTTCGATTGCCCGTCATATTTCT
GTATTCCTTCCAACAAACCGCGCCAGCATTTGCATGCTCTCATCGTCGTC
CGAGTACTTTGCGGTCATTGACGAGATGAAAGTGACGGAATTGAAGGAGC
ATCTCCGGCGCCTGAAGAAACCCGTCTCGGGCACTAAGGGGGTGCTGCAA
GAGCGCTTGAAGGAGGCTCTGACGGAGACACCCGTGCAGCTCAGCAGCAT
CACAGCCCCCACGTCACCAGAAGCGTCAGTGACGTCCGAAGGAAGTGACC
agggcatggacgtggaggaggaagagcaactTCTGCCCCCAGCCGACCTA
GGAGATATTGAGGACGGGCCACTCGGCAATGGCGGCGGGGCCAGGGCGAG
TCCTGGGGGCCGCGCCGCCCAGTTTTCACGTGGGTACACCGAGGATGAAG
ACGCGTACGACCAGACtggtcgaggcgggggcTCCAgaagggggccgggc
gggagagccccgtggagggcggacgaggaggcgtgggCGCATGcctcgga
ggaggtggtggagatcgGGCAAGAGATGGAGGCAGAAGTGATGAGTTTCT
CGGATCTGGGCATCACGGTGCGGTTGGATGGGCGGTACCGTGGCTTGATC
TACGAGGACGAGCTCGACTACCAGCGGGACCGGCAAGGACTGCGGGTAGG
GGACCGGTGCGCCGTGTACGTGCAAAAAGTCCGGCGGGACGGAAAAGTGG
ACGTGTCGTTTCGGAAGTTCGGAACTTTCCCCAAGCTGCAGGACGGTCGG
CAGGTGGTGTGGGACGCGCTCCTGGCCTCCGCGGACGGGTCGTTGCCTCT
TGGGGACCGGAGCGacagcgaggaggtggtggcggccctTGGGATCAGCA
AGAGCCAGTTCAAAGCCGCGGTGGGCATGCTCTACAAGGCGCGGCAGGTG
CAAGCCCCCGAGCCCTATCGGATAACCCTGGTGccggaagaagagagggg
tggggagggagaagaaggaggagaggagggcgggcgggtgggggagagag
cggCCTCGATGCCCGCCTTTCAGGTGCGGcctgacggggaggaggggggc
tggGGCACCCGCATGGAAGGAAACTGGGAccagaagcgggaggaggcgaa
gtgGGCGCCGACCAAGGTCTTCATCCGGGGCCTGCCGTTCTctctgacgg
aggaggacgtgcatAAGATGATGAGCAAGATCGGCGCGGTGGTAGGGATC
CGAGGGATGACCCGGAGGGACGACGGTCGGCCGAGCGGCGTGGCGTGGGT
ggagtacgaggaggaggcggacgcggTCACCGCCAAGGGCGTCTTCAATG
GGAAGACCTTCCGGGGGCGGTACCTGGAGGTCTTcagcatggaggagatg
cggagTGATCAGCACagaagaggcggtggcggcgggtatgagaagaaggg
aagtgGGGGTGGGTACgaacggagagggggaggcggccggccAGGGGGGT
ACGACAGGCGCGGGGCGagtcttggaggaggggattggaaggcaggagga
gggcaacgTCGAGAGTTTTCTCCTCGGGGGGGTATGGGCGGCAGTCGAAG
CTACGACGCGgatggcgaaggggagggtagCTGGGGGGACGTGGGGATGG
GTTGGAAGaaccaggggggggggagcgaggggagaaggacgggaggggac
cGAGGGGGGTATTTCACCCCCCGAAAGGGTGCGGGAGGTATGGAGGATGG
ATTAAATTTCGATGCGGACTTAGATTttggagaggacgacgagtaGGATG
ATGGAGTGTGAAAGTTGAAAAAGGAAGTAGAGGATAAGCTGTGCGGCCCT
CTGCTGAAAGGACTGCACTTAAACGTGTCGAATCACGACACAAATCACAA
TCAAATGAAGCGCAAAGCACGGGGTAAATGTCATGGTCTTAAATTTCGGA
CCGACATTTTCATGACTGTGGTTGAGAGTGATCCTCATTGCGCGCAATTT
ACTTTTTGAGGTGAGAGCAACGTGAAATGCAAGGGAAGAGGCTGACAAGA
AAGCTCTCCATCTCGCTTGCACCATGACCAGCAAAGCCTCTCCATGCATG
ATAGCCAGTGGCATGTGCTCACACACTCGTACAATCGACACTAGCAATTC
TTTGCAATTCATTTTTCCGGGCAGACGGGCCAGCTAGcagcagagaggga
ggaggttggcagTGCGTATCAAGTCTGAGCTTGAAGTGGGCAATTGTTCC
ATCCAAGACTAGAGATGGCGACTTTCGATGCGGTGCGATATCATACATGC
ATTACCACCACTTCGACAGGAACAAATATACACCTCCGCTGCTTGTTTGG
ATCCCCTTGCGAGTACAAATCTGTCAGTGAGTTATTCGCACGCATCCTGA

Coding sequence (CDS) from alignment at CM002468.1:637040..639539+

>rna6494 ID=rna6494|Name=rna6494|organism=Nannochloropsis gaditana|type=CDS|length=2844bp|location=Sequence derived from alignment at CM002468.1:637040..639539+ (Nannochloropsis gaditana)
ATGCCCGTGCACAGGATGTTCGTCCTCACGCTTTCCTCTTTATGCCTATG
GCGTGGTCTACCCTCGGCTTCTGCTTTCTTGGCCGcacgcttcccttcct
ttgccccaCTCAGTGCCGTGTCCGCCCCTTCGATTGCCCGTCATATTTCT
GTATTCCTTCCAACAAACCGCGCCAGCATTTGCATGCTCTCATCGTCGTC
CGAGTACTTTGCGGTCATTGACGAGATGAAAGTGACGGAATTGAAGGAGC
ATCTCCGGCGCCTGAAGAAACCCGTCTCGGGCACTAAGGGGGTGCTGCAA
GAGCGCTTGAAGGAGGCTCTGACGGAGACACCCGTGCAGCTCAGCAGCAT
CACAGCCCCCACGTCACCAGAAGCGTCAGTGACGTCCGAAGGAAGTGACC
agggcatggacgtggaggaggaagagcaactTCTGCCCCCAGCCGACCTA
GGAGATATTGAGGACGGGCCACTCGGCAATGGCGGCGGGGCCAGGGCGAG
TCCTGGGGGCCGCGCCGCCCAGTTTTCACGTGGGTACACCGAGGATGAAG
ACGCGTACGACCAGACtggtcgaggcgggggcTCCAgaagggggccgggc
gggagagccccgtggagggcggacgaggaggcgtgggCGCATGcctcgga
ggaggtggtggagatcgGGCAAGAGATGGAGGCAGAAGTGATGAGTTTCT
CGGATCTGGGCATCACGGTGCGGTTGGATGGGCGGTACCGTGGCTTGATC
TACGAGGACGAGCTCGACTACCAGCGGGACCGGCAAGGACTGCGGGTAGG
GGACCGGTGCGCCGTGTACGTGCAAAAAGTCCGGCGGGACGGAAAAGTGG
ACGTGTCGTTTCGGAAGTTCGGAACTTTCCCCAAGCTGCAGGACGGTCGG
CAGGTGGTGTGGGACGCGCTCCTGGCCTCCGCGGACGGGTCGTTGCCTCT
TGGGGACCGGAGCGacagcgaggaggtggtggcggccctTGGGATCAGCA
AGAGCCAGTTCAAAGCCGCGGTGGGCATGCTCTACAAGGCGCGGCAGGTG
CAAGCCCCCGAGCCCTATCGGATAACCCTGGTGccggaagaagagagggg
tggggagggagaagaaggaggagaggagggcgggcgggtgggggagagag
cggCCTCGATGCCCGCCTTTCAGGTGCGGcctgacggggaggaggggggc
tggGGCACCCGCATGGAAGGAAACTGGGAccagaagcgggaggaggcgaa
gtgGGCGCCGACCAAGGTCTTCATCCGGGGCCTGCCGTTCTctctgacgg
aggaggacgtgcatAAGATGATGAGCAAGATCGGCGCGGTGGAACAAATA
TACACCTCCGCTGCTTGTTTGGATCCCCTTGCGAGTACAAATCTGTCAGT
GAGTTATTCGCACGCATCCTGAATGCCCGTGCACAGGATGTTCGTCCTCA
CGCTTTCCTCTTTATGCCTATGGCGTGGTCTACCCTCGGCTTCTGCTTTC
TTGGCCGcacgcttcccttcctttgccccaCTCAGTGCCGTGTCCGCCCC
TTCGATTGCCCGTCATATTTCTGTATTCCTTCCAACAAACCGCGCCAGCA
TTTGCATGCTCTCATCGTCGTCCGAGTACTTTGCGGTCATTGACGAGATG
AAAGTGACGGAATTGAAGGAGCATCTCCGGCGCCTGAAGAAACCCGTCTC
GGGCACTAAGGGGGTGCTGCAAGAGCGCTTGAAGGAGGCTCTGACGGAGA
CACCCGTGCAGCTCAGCAGCATCACAGCCCCCACGTCACCAGAAGCGTCA
GTGACGTCCGAAGGAAGTGACCagggcatggacgtggaggaggaagagca
actTCTGCCCCCAGCCGACCTAGGAGATATTGAGGACGGGCCACTCGGCA
ATGGCGGCGGGGCCAGGGCGAGTCCTGGGGGCCGCGCCGCCCAGTTTTCA
CGTGGGTACACCGAGGATGAAGACGCGTACGACCAGACtggtcgaggcgg
gggcTCCAgaagggggccgggcgggagagccccgtggagggcggacgagg
aggcgtgggCGCATGcctcggaggaggtggtggagatcgGGCAAGAGATG
GAGGCAGAAGTGATGAGTTTCTCGGATCTGGGCATCACGGTGCGGTTGGA
TGGGCGGTACCGTGGCTTGATCTACGAGGACGAGCTCGACTACCAGCGGG
ACCGGCAAGGACTGCGGGTAGGGGACCGGTGCGCCGTGTACGTGCAAAAA
GTCCGGCGGGACGGAAAAGTGGACGTGTCGTTTCGGAAGTTCGGAACTTT
CCCCAAGCTGCAGGACGGTCGGCAGGTGGTGTGGGACGCGCTCCTGGCCT
CCGCGGACGGGTCGTTGCCTCTTGGGGACCGGAGCGacagcgaggaggtg
gtggcggccctTGGGATCAGCAAGAGCCAGTTCAAAGCCGCGGTGGGCAT
GCTCTACAAGGCGCGGCAGGTGCAAGCCCCCGAGCCCTATCGGATAACCC
TGGTGccggaagaagagaggggtggggagggagaagaaggaggagaggag
ggcgggcgggtgggggagagagcggCCTCGATGCCCGCCTTTCAGGTGCG
GcctgacggggaggaggggggctggGGCACCCGCATGGAAGGAAACTGGG
AccagaagcgggaggaggcgaagtgGGCGCCGACCAAGGTCTTCATCCGG
GGCCTGCCGTTCTctctgacggaggaggacgtgcatAAGATGATGAGCAA
GATCGGCGCGGTGGAACAAATATACACCTCCGCTGCTTGTTTGGATCCCC
TTGCGAGTACAAATCTGTCAGTGAGTTATTCGCACGCATCCTGA

Synonyms

Publications