EWM24196.1, cds6478 (CDS) Nannochloropsis gaditana

Overview
NameEWM24196.1
Unique Namecds6478
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:637040..638380 +
Alignment locationCM002468.1:639459..639539 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24196.1
Productrna binding s1
Orig transcript idgnl|cribi|Naga_100253g9.9427.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:637040..638380 +
CM002468.1supercontigCM002468.1:639459..639539 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR003029Rbsml_prot_S1_RNA-bd_dom
IPR012677Nucleotide-bd_a/b_plait
IPR022967S1_dom
IPR003034SAP_dom
Homology
[Close]
BLAST of EWM24196.1 vs. NCBI_GenBank
Match: gi|585105584|gb|EWM24196.1| (rna binding s1 [Nannochloropsis gaditana])

HSP 1 Score: 958.748 bits (2477), Expect = 0.000e+0
Identity = 473/473 (100.00%), Postives = 473/473 (100.00%), Query Frame = 0 
Query:    1 MPVHRMFVLTLSSLCLWRGLPSASAFLAARFPSFAPLSAVSAPSIARHISVFLPTNRASICMLSSSSEYFAVIDEMKVTELKEHLRRLKKPVSGTKGVLQERLKEALTETPVQLSSITAPTSPEASVTSEGSDQGMDVEEEEQLLPPADLGDIEDGPLGNGGGARASPGGRAAQFSRGYTEDEDAYDQTGRGGGSRRGPGGRAPWRADEEAWAHASEEVVEIGQEMEAEVMSFSDLGITVRLDGRYRGLIYEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGRQVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKARQVQAPEPYRITLVPEEERGGEGEEGGEEGGRVGERAASMPAFQVRPDGEEGGWGTRMEGNWDQKREEAKWAPTKVFIRGLPFSLTEEDVHKMMSKIGAVEQIYTSAACLDPLASTNLSVSYSHAS 473
            MPVHRMFVLTLSSLCLWRGLPSASAFLAARFPSFAPLSAVSAPSIARHISVFLPTNRASICMLSSSSEYFAVIDEMKVTELKEHLRRLKKPVSGTKGVLQERLKEALTETPVQLSSITAPTSPEASVTSEGSDQGMDVEEEEQLLPPADLGDIEDGPLGNGGGARASPGGRAAQFSRGYTEDEDAYDQTGRGGGSRRGPGGRAPWRADEEAWAHASEEVVEIGQEMEAEVMSFSDLGITVRLDGRYRGLIYEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGRQVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKARQVQAPEPYRITLVPEEERGGEGEEGGEEGGRVGERAASMPAFQVRPDGEEGGWGTRMEGNWDQKREEAKWAPTKVFIRGLPFSLTEEDVHKMMSKIGAVEQIYTSAACLDPLASTNLSVSYSHAS
Sbjct:    1 MPVHRMFVLTLSSLCLWRGLPSASAFLAARFPSFAPLSAVSAPSIARHISVFLPTNRASICMLSSSSEYFAVIDEMKVTELKEHLRRLKKPVSGTKGVLQERLKEALTETPVQLSSITAPTSPEASVTSEGSDQGMDVEEEEQLLPPADLGDIEDGPLGNGGGARASPGGRAAQFSRGYTEDEDAYDQTGRGGGSRRGPGGRAPWRADEEAWAHASEEVVEIGQEMEAEVMSFSDLGITVRLDGRYRGLIYEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGRQVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKARQVQAPEPYRITLVPEEERGGEGEEGGEEGGRVGERAASMPAFQVRPDGEEGGWGTRMEGNWDQKREEAKWAPTKVFIRGLPFSLTEEDVHKMMSKIGAVEQIYTSAACLDPLASTNLSVSYSHAS 473
[Close]
BLAST of EWM24196.1 vs. NCBI_GenBank
Match: gi|553193339|ref|XP_005855755.1| (rna binding s1 domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293296|gb|EKU20596.1| rna binding s1 domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 761.14 bits (1964), Expect = 0.000e+0
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0 
Query:    1 MPVHRMFVLTLSSLCLWRGLPSASAFLAARFPSFAPLSAVSAPSIARHISVFLPTNRASICMLSSSSEYFAVIDEMKVTELKEHLRRLKKPVSGTKGVLQERLKEALTETPVQLSSITAPTSPEASVTSEGSDQGMDVEEEEQLLPPADLGDIEDGPLGNGGGARASPGGRAAQFSRGYTEDEDAYDQTGRGGGSRRGPGGRAPWRADEEAWAHASEEVVEIGQEMEAEVMSFSDLGITVRLDGRYRGLIYEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGRQVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKARQVQAPEPYRITLVPEEERGGEGEEGGEEGG 378
            MPVHRMFVLTLSSLCLWRGLPSASAFLAARFPSFAPLSAVSAPSIARHISVFLPTNRASICMLSSSSEYFAVIDEMKVTELKEHLRRLKKPVSGTKGVLQERLKEALTETPVQLSSITAPTSPEASVTSEGSDQGMDVEEEEQLLPPADLGDIEDGPLGNGGGARASPGGRAAQFSRGYTEDEDAYDQTGRGGGSRRGPGGRAPWRADEEAWAHASEEVVEIGQEMEAEVMSFSDLGITVRLDGRYRGLIYEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGRQVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKARQVQAPEPYRITLVPEEERGGEGEEGGEEGG
Sbjct:    1 MPVHRMFVLTLSSLCLWRGLPSASAFLAARFPSFAPLSAVSAPSIARHISVFLPTNRASICMLSSSSEYFAVIDEMKVTELKEHLRRLKKPVSGTKGVLQERLKEALTETPVQLSSITAPTSPEASVTSEGSDQGMDVEEEEQLLPPADLGDIEDGPLGNGGGARASPGGRAAQFSRGYTEDEDAYDQTGRGGGSRRGPGGRAPWRADEEAWAHASEEVVEIGQEMEAEVMSFSDLGITVRLDGRYRGLIYEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGRQVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKARQVQAPEPYRITLVPEEERGGEGEEGGEEGG 378
[Close]
BLAST of EWM24196.1 vs. NCBI_GenBank
Match: gi|491629877|ref|WP_005487416.1| (hypothetical protein [Halanaerobium saccharolyticum] >gi|460789298|emb|CCU78066.1| hypothetical protein HSACCH_00376 [Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643])

HSP 1 Score: 94.3597 bits (233), Expect = 2.935e-19
Identity = 52/126 (41.27%), Postives = 80/126 (63.49%), Query Frame = 0 
Query:  223 GQEMEAEVMSFSDLGITVRLDGRYRGLIYEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGRQVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKAR 348
            G +++  V  F+DLG TV +D +Y GL+YE+++      + + VGDR   Y++K+R D K+DVS RK G + +++D ++ +  A L +  GSLPL D S  E++  AL ISK  FK A+G LYK +
Sbjct:   23 GDKVDILVYKFTDLGATVIIDDKYFGLVYENDI-----YKEITVGDRMKGYIKKIREDNKIDVSLRKIG-YGRIEDAKEKIL-ARLKAKGGSLPLNDDSSPEKIKKALQISKGSFKKAIGGLYKEK 141
[Close]
BLAST of EWM24196.1 vs. NCBI_GenBank
Match: gi|559212041|ref|WP_023578888.1| (hypothetical protein [Flavobacterium limnosediminis] >gi|558901431|gb|ESU28652.1| hypothetical protein FLJC2902T_12430 [Flavobacterium limnosediminis JC2902])

HSP 1 Score: 97.4413 bits (241), Expect = 4.200e-19
Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 0 
Query:  220 VEIGQEMEAEVMSFSDLGITVRLDGRYRGLIYEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGRQVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKARQVQAPE 354
            VE+G+E++  V   +DLGI V ++ +++GL+Y +E+        LR GDR   +++ +R DGK+DVS RK G F  ++   QV+ D L AS  G L L D S  E++   L +SK  FK A+G+LYK + +   E
Sbjct:  148 VEVGEEVDLIVSHITDLGINVIINEKHKGLLYLNEV-----YDDLRTGDRIVGFIKNIRPDGKIDVSTRKLG-FENIEPSSQVILDELKASR-GFLRLNDNSHPEDIKTVLKMSKKTFKKAIGLLYKQKLIDIKE 275
[Close]
BLAST of EWM24196.1 vs. NCBI_GenBank
Match: gi|1119376756|ref|WP_072353206.1| (DNA-binding protein [Flavobacteriaceae bacterium A100])

HSP 1 Score: 93.2041 bits (230), Expect = 5.419e-19
Identity = 47/129 (36.43%), Postives = 76/129 (58.91%), Query Frame = 0 
Query:  220 VEIGQEMEAEVMSFSDLGITVRLDGRYRGLIYEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGRQVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKAR 348
            +E+G +++  +   S +G +V +D  + GL+Y++E   +     L  GD+   YV+K+R DGK+D+S +  G    +    Q V DAL  + +G LPL D+S  E++  AL +SK  FKAA+G LYK +
Sbjct:    1 MEVGDQVDIIIGRESKIGFSVLIDHEFEGLVYKNEAYIK-----LHEGDKMKAYVKKIREDGKIDISLQPIGFLNTITQNEQFVMDALKKANEGFLPLHDKSSPEDIKYALNMSKKAFKAAIGGLYKKK 124
[Close]
BLAST of EWM24196.1 vs. NCBI_GenBank
Match: gi|503967048|ref|WP_014201042.1| (GntR family transcriptional regulator [Owenweeksia hongkongensis] >gi|359347262|gb|AEV31681.1| hypothetical protein Oweho_0667 [Owenweeksia hongkongensis DSM 17368])

HSP 1 Score: 95.9005 bits (237), Expect = 1.148e-18
Identity = 52/128 (40.62%), Postives = 81/128 (63.28%), Query Frame = 0 
Query:  223 GQEMEAEVMSFSDLGITVRLDGRYRGLIYEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGRQVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKARQV 350
             QE++  V S S LG  V ++ +Y GL+YE+E+      + L++GD+   Y++++R D K+DVS +K G +  ++   QV+ D L  SADG LPL D+S  EE+ A L +SK  FK A+G LY+ +Q+
Sbjct:  145 NQEVDLLVASQSPLGYNVIINQKYMGLVYENEV-----FKNLKLGDKPKGYIKQIREDNKIDVSLQKQG-YGNVEPNTQVILDKL-KSADGFLPLNDKSSPEEITAQLEMSKKTFKKAIGGLYREKQI 265
[Close]
BLAST of EWM24196.1 vs. NCBI_GenBank
Match: gi|753851375|ref|WP_041606990.1| (hypothetical protein [Halanaerobium praevalens])

HSP 1 Score: 92.8189 bits (229), Expect = 1.152e-18
Identity = 51/126 (40.48%), Postives = 80/126 (63.49%), Query Frame = 0 
Query:  223 GQEMEAEVMSFSDLGITVRLDGRYRGLIYEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGRQVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKAR 348
            G +++  V  F+DLG TV +D +Y GL+YE+++ Y+     + VGD+   Y++K+R D K+DVS RK G + +++D ++ +  A L +  G LPL D S  E++  AL ISK  FK A+G LYK +
Sbjct:   23 GDKVDILVYKFTDLGATVIIDNQYFGLVYENDI-YKE----ITVGDQITGYIKKIREDNKIDVSLRKIG-YGRIEDAKEKIL-ARLKNKGGFLPLNDDSSPEKIKKALQISKGSFKKAIGGLYKEK 141
[Close]
BLAST of EWM24196.1 vs. NCBI_GenBank
Match: gi|1176222561|gb|OQY32499.1| (hypothetical protein B6241_10915 [Spirochaetaceae bacterium 4572_59])

HSP 1 Score: 95.9005 bits (237), Expect = 1.563e-18
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 0 
Query:  223 GQEMEAEVMSFSDLGITVRLDGRYRGLIYEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGRQVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKARQVQAPE 354
             Q++E  V  +++ GI V LD +Y+GL+Y +E+      + L +GD+C  Y++K+R DG +D S R+ G      D R V+  AL A A G LPL D+S+ EE+   L +SK  FK  VG LY+ +++   E
Sbjct:  151 NQKVECLVFGYNEAGIRVILDSKYKGLLYRNEV-----FEELNIGDKCTAYIKKIREDGLIDASLRRQGFRESTDDARSVILRALKA-AGGYLPLYDKSNPEEIKRTLKMSKKIFKKTVGGLYREKKISMEE 276
[Close]
BLAST of EWM24196.1 vs. NCBI_GenBank
Match: gi|941712068|ref|WP_055147743.1| (GntR family transcriptional regulator [Leadbetterella sp. JN14-9] >gi|936517077|gb|KPM48978.1| GntR family transcriptional regulator [Leadbetterella sp. JN14-9])

HSP 1 Score: 95.1301 bits (235), Expect = 2.555e-18
Identity = 57/143 (39.86%), Postives = 81/143 (56.64%), Query Frame = 0 
Query:  214 HASEEVVEIGQEMEAEVMSF--SDLGITVRLDGRYRGLIYEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGRQVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKARQVQAPE 354
            H   E +++ +  E E++ +  SDLG  V ++  YRGLIYE+E+      Q +  GDR   YV+KVR DGK+D+S R  G F  + D        LL SA+G LP  D+SD  ++    G+SK  FK A+G LYK R ++  E
Sbjct:  135 HLEVENIQLEERQEVEILPYEKSDLGQNVIVNDLYRGLIYENEI-----FQPVIWGDRTKAYVKKVREDGKIDISLRPIG-FENVVDTDAQKILELLKSANGELPYTDKSDPADIQGYFGMSKKAFKRAIGGLYKQRLIEISE 271
[Close]
BLAST of EWM24196.1 vs. NCBI_GenBank
Match: gi|497820853|ref|WP_010135009.1| (hypothetical protein [Ochrovirga pacifica])

HSP 1 Score: 91.2781 bits (225), Expect = 2.569e-18
Identity = 57/137 (41.61%), Postives = 80/137 (58.39%), Query Frame = 0 
Query:  218 EVVEIGQEMEAEVMSFSDLGITVRLDGRYRGLIYEDELDYQRDRQGLRVGDRCAVYVQKVRRDGKVDVSFRKFGTFPKLQDGRQVVWDALLASADGSLPLGDRSDSEEVVAALGISKSQFKAAVGMLYKARQVQAPE 354
            E  E+GQE+E  + SFS +GITV +D    G++Y +E+ YQR    L  G R   YV+K+R DGK+D+S +  G    +   +  V +AL A  +G LPL D+S  E +   LG+SK  FK A+G LYK + V   E
Sbjct:    2 EEFEVGQEVEIIIGSFSKIGITVLVDEFCEGMLYTNEV-YQR----LEEGQRLKAYVKKIREDGKLDLSLQPLGFRNSITKFQVQVLNALKAH-NGFLPLTDKSSPETIKYELGMSKKAFKNAIGGLYKNKVVDLEE 132
The following BLAST results are available for this feature:
BLAST of EWM24196.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105584|gb|EWM24196.1|0.000e+0100.00rna binding s1 [Nannochloropsis gaditana][more]
gi|553193339|ref|XP_005855755.1|0.000e+0100.00rna binding s1 domain-containing protein, partial ... [more]
gi|491629877|ref|WP_005487416.1|2.935e-1941.27hypothetical protein [Halanaerobium saccharolyticu... [more]
gi|559212041|ref|WP_023578888.1|4.200e-1939.26hypothetical protein [Flavobacterium limnosedimini... [more]
gi|1119376756|ref|WP_072353206.1|5.419e-1936.43DNA-binding protein [Flavobacteriaceae bacterium A... [more]
gi|503967048|ref|WP_014201042.1|1.148e-1840.63GntR family transcriptional regulator [Owenweeksia... [more]
gi|753851375|ref|WP_041606990.1|1.152e-1840.48hypothetical protein [Halanaerobium praevalens][more]
gi|1176222561|gb|OQY32499.1|1.563e-1838.64hypothetical protein B6241_10915 [Spirochaetaceae ... [more]
gi|941712068|ref|WP_055147743.1|2.555e-1839.86GntR family transcriptional regulator [Leadbettere... [more]
gi|497820853|ref|WP_010135009.1|2.569e-1841.61hypothetical protein [Ochrovirga pacifica][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6494rna6494Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications