rna6492, rna6492 (mRNA) Nannochloropsis gaditana

Overview
Namerna6492
Unique Namerna6492
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1713
Alignment locationCM002468.1:631977..634496 +

Link to JBrowse

Properties
Property NameValue
Productactin binding protein
Orig transcript idgnl|cribi|Naga_100253g7.9428.mrna
Orig protein idgnl|cribi|Naga_100253g7.9428
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:631977..634496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100253g7gene6272Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6492rna6492-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24197.1cds6476Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6492 ID=rna6492|Name=rna6492|organism=Nannochloropsis gaditana|type=mRNA|length=1713bp
CCCCTCTGAGACGCCATGGATCTTGATAAATGTCTCATTGTACCGTGTAG
CATAAGATATTGCACCTATAGGCATCGCAATCTACCTGTCAAAGATACAT
AGCCTTCAAATTGTCCGCTCATGAACTTAGTAACGCATTATCTGAAGACC
TTCCCGCCGCACCGTCACCGCCACACAATTCGTTAGGATTCTATTGCGTG
CACTGAACCCTGGCCCCTCCATTACGACGCCTGCAGCTTTTGACACGGCA
TTTATCGTCCTTTCACGTGGAACCCTCTCGCATACCCTGCATTGCTCCTC
ATATAATGTCCTCTTCGTTAATTGTCGGCCTGGTGGGCGGCGGGACTGTC
GGCGGGGGGGTTTACGACATCGTCGAACATACGCACAAAGACTTCTTTCG
TTCCCTGGGGGCGCACGTGCAAGTGAAACGAATCGCGGTTCGAAACCTGA
CAAAGCAACGGGACTTCTCCGTGGCGGCTCACACCGAATTGGTTGGTGAC
TGGCGGCTGGTGCTGGACGATCCCGAGATCAACACGGTGATCGAAGTCAT
GGGCGGTATCACAGAAGCCAAAGAGGTGGTCTTTGGGGCGATTGCGAAAG
GAAAGCATGTGATTACGGCGAACAAAGCACTCCTGGCTGCCTACCTTCCC
GAGATTGTGGACCTTCTGAAAAAACATCCTCAGGTCAAATTAGGGTACGA
AGCGGCTGTGTGTGGCGGCATCCCCATCATCCACACCCTGCAGAACGACT
ATCTGGGGGATCAAGTCTCCCAGATCCTTGGGATTATGAACGGTACGACG
AACTTCATGCTGACGAAGATGGAGAGTGGCGCGGATTACGGCCAGGTCCT
TGCCGAGGCACAAGCATTGGGCTACGCCGAGGCCGACCCCACAGCCGACG
TGGAAGGGCATGACGTGCAGGCTAAAATTGCCCTGCTTGCAAAGCTCGCT
TTCGGAGTGCACGTTCCTTCGGACCAGATTCCCACAAAAGGAATTTCGTC
TGTGGCCTCTGTGGATTTCGAGTACGCGCGCCTTTTGAACGCCACCATTA
AATTGTTGGGGATGGCTCAACTTTCGCCGGACGGGAAAAAGCTTTCGGTG
GCAGTCTCGCCTTTCATTGTTCCTCGAGAACATCCCATCGCTGGGACGAA
CGGATCCACGAATATTGTCAACATTTCTTCGCGAAACTTGGTGTCTTCCT
CTTACATCGGCCCCGGGGCAGGACGCTATCCCACGGCGAACAGTATCGTC
AGTGACCTCGTGCGCCTTGCTCGTGGCTTGGTTGGCCCGCCCTTCCCCGT
GGATCGCGCCATGCCCCTCGAACCGGACTACACATCACGCTTTTACATCC
GACTTCGAATCAGGGATCAGCTGGGCGTGATTCGTGTGGTGGGCGAAATA
GCAGAGAGGCATGGCGTCTCTATCTATGCCATCCTACAGAACCCCATCTC
TGACCCGAACGACATTCATTTCGTCGTTACGACAGAGCCCGCTCGCCATT
CGCAGGTACAGGCTTTTGCGGATGACATCGAAAAACAGGACTTCACCAAG
GGCCCACCTCTCTTCTTCGCATTTTTGCTTTGAAGACTAAGTGCATGGGG
ATGATGGGGCAAGAAGCTTGCGGAGTAACGAAAATGGAAAAACAATTTGA
AGCTGAAATTATTGAACGCTGGAGATCAACTTGAAAGGAACTCAAGTGAA
AATGGAGATCTTT
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protein sequence of rna6492

>rna6492-protein ID=rna6492-protein|Name=rna6492|organism=Nannochloropsis gaditana|type=polypeptide|length=461bp
MSHFVRASKYRHVYVQPPKTGEAYSNIRLSTAVGEQNYIKANPKYFAVAL
SGGGGPFTCIPFEAIGALPAAPPVFSGHTSNVLDFDFSPFHDHLIASGAE
DTTVKVWGIPEGGLKESIAEPLVDLRAHERKVTLLRFHPTAANVLASVSA
DGMIKLWDVEGGQEGGQCHVHQQLVQDVQWDYRGNTFATTCKDKVLRVLD
GRTGRLGLERKDAHEGSKSSKCVFLGDREMLLTVGFTKQSRRQLKIWDLK
NLKQEVKTLDIDQAAGAIMPFFDSDTNLLYLAGKGDGNIRYYEIVSEAPF
VFPISEYRSTTPSKGCCLVPKRGLNVLRCETARVLKLTTSSVEPLSFIVP
RKGGFFQDDLFPPSMAGLPSHSAPEWWAGSDKAPLLMSLDPAVREGGKEG
GKDMGWRGVGSPLGSSGGSLGNRPPSGGGRTTGQLQKELDVALARISLLE
SRLKAAGLECS
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mRNA from alignment at CM002468.1:631977..634496+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6492 ID=rna6492|Name=rna6492|organism=Nannochloropsis gaditana|type=mRNA|length=2520bp|location=Sequence derived from alignment at CM002468.1:631977..634496+ (Nannochloropsis gaditana)
GTCGcgagggacgaggacggtCGTAACGGCacccatcccctccgcccccg agCCCACGCTCTCACTACTTACTCAGTGTcatcccgtccttctccccaca GCGTGCACGGTTGCCCCTATCTCAGGCAACCTTAGCTGGCAAGGAAGACG CGCCCGTCTTTGTTGTCGATACGtgcccccctcgctcctcgctTCCATCA TCGTAGTCCTTCTcgatcctcctcgctcctccttctgggTTTCATTCCGC AGTCTCGACATGTCTCATTTCGTCCGCGCATCCAAATATCGGCATGTATA TGTTCAGCCCCCGAAAACCGGAGAGGCTTACTCGAACATCCGTCTATCGA CCGCTGTGGGGGAGCAGAATTACATCAAAGCCAACCCAAAGTACTTTGCA GTGGCCCTCTCGGTAAGTGCATTTTTTTCGTATAAGTGAACATTTATCAG TCTTTTTAGTCGGACACTGTTTTCGATTCAAGGCCTAGAGAAGGCTCAAA GAGATTGCTGAAAAGCTGGGCACTGTACTGCTCTTGATCCACAGCAAGTC GTGCTTATTACCGTCCTCACGGGCTCATCCCCTGATCGCCCCCTCGATTC GTAATTTTTTCCTaccagggcggtggaggaccaTTCACGTGCATCCCCTT CGAAGCAATTGGTgctctccccgccgccccgccAGTTTTCAGCGGCCATA CTTCGAATGTCCTCGACTTCgatttctctccctttcatgACCATCTGATC GCATCAGGTGCTGAGGACACTACCGTGAAGGTCTGGGGCATACCTGAAGG AGGGTTGAAAGAAAGTATCGCCGAGCCCTTGGTCGACTTGCGTGCCCACG AAAGAAAGGTTACTTTGTTGCGCTTCCATCCCACCGCGGCCAACGTGCTG GCCAGCGTCAGCGCGGACGGAATGATCAAGCTgtgggacgtggagggagg gcaggagggagggcagtgcCATGTGCACCAGCAACTGGTCCAAGACGTTC AGTGGGACTACCGGGGGAACACGTTTGCGACCACATGCAAGGACAAGGTC CTGCGGGTCCTGGAtgggcggacggggcggtTGGGGttggagaggaagga tgCACACGAAGGGTCTAAGAGCAGCAAGTGCGTCTTTCTCGGGGACCGAG AGATGCTGCTAACAGTCGGCTTCACCAAACAAAGTCGCCGTCAGGTAAGG GGTTTGAATGGGGGCTGGAATCATGAGCGGGCTCGTCCAGGGTTCTCAGT TCCTTTTTCGGAAACGCGTTTTCTCGCTGATTTTTTTTActctcattttt cctccttgtgtGCCAGCTCAAGATATGGGACCTAAAGAATCTGAAGCAGG AGGTGAAGACCCTGGACATCGACcaggcggcgggcgccaTCATGCCTTTC TTCGACTCCGACACCAacctcctctacctcgctGGCAAGGtgcgcttcct ccgtccttccctcttttccccttctcaaTATTGTCGCATGCTATCGCGGC TGTCCACAAAATGGCTTTATGCTAGACAGACCCCCCTTCACTCATATTTA TTCTTCCCACGCATCAGGGCGACGGCAATATCCGCTACTACGAGATTGTC TCGGAAGCCCCCTTTGTCTTTCCCATCTCCGAGTATCGCTCCACTACCCC CTCCAAAGGCTGTTGCTTGGTGCCCAAGCGCGGGTTGAACGTGCTCCGCT GCGAGACCGCTCGTGTCCTCAAGCTCACCACTAGCAGCGTGGaacccctc tccttcatcgTCCCCCGCAAGGGCGGCTTTTTCCAGGACgaccttttccc cccctcaaTGGCGGGCCTTCCCTCGCATTCGGCACCGGAATGGTGGGCAG GCTCTGATAAGGCGCCCTTGCTCATGTCTTTGGACCCCGCggtcagggag ggcgggaaggagggtgggaaggataTGGGGTGGAGAGGGGTAGGCTCGCC GTTGGGGTCATCAGGAGGCAGCCTTGGGAACCGTCCGCcatcggggggag ggaggaccacGGGACAGCTGCAAAAGGAGCTGGACGTGGCTTTGGCGAGG ATCTCGTTGTTGGAAAGCCGACTGAAAGCTGCAGGACTGGAGTGTTCTTG AGcgagggatgaaggggcgtggagggtgTGATATAGATAGGGCGTGCCAG ACCACGCTTTGGCCGCGTGCGCGAAGAAAGGCCGGCaaaaaggaatggaa aaTTGCATAAATGTAACGCGACAGGATTAAAAGACAGCAGTTAAAGTCGA GCATCAAAgtgaagatgaggaaggagggaggaagtgcgaGGGTAAGAAGA GTCTAGTCACTTTAGCCCAAGACACAGGGGATGACCGTTGTATCAATATA ATTGGCATGCGTTGTTGCATCATACCACTCGAAAAGGTAAGCCgcagaaa gaaaggcgggcGTCACAACGAATTATAGGCGAAAGCACAGGGTTTTGACG ACGGAGAGTGAGAGATGTCCGAATGTGGAAGTTGATATATACATTAGCGC CGCGCCATTGTGTCCGTCGT
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Coding sequence (CDS) from alignment at CM002468.1:631977..634496+

>rna6492 ID=rna6492|Name=rna6492|organism=Nannochloropsis gaditana|type=CDS|length=5544bp|location=Sequence derived from alignment at CM002468.1:631977..634496+ (Nannochloropsis gaditana)
ATGTCTCATTTCGTCCGCGCATCCAAATATCGGCATGTATATGTTCAGCC
CCCGAAAACCGGAGAGGCTTACTCGAACATCCGTCTATCGACCGCTGTGG
GGGAGCAGAATTACATCAAAGCCAACCCAAAGTACTTTGCAGTGGCCCTC
TCGggcggtggaggaccaTTCACGTGCATCCCCTTCGAAGCAATTGGTgc
tctccccgccgccccgccAGTTTTCAGCGGCCATACTTCGAATGTCCTCG
ACTTCgatttctctccctttcatgACCATCTGATCGCATCAGGTGCTGAG
GACACTACCGTGAAGGTCTGGGGCATACCTGAAGGAGGGTTGAAAGAAAG
TATCGCCGAGCCCTTGGTCGACTTGCGTGCCCACGAAAGAAAGGTTACTT
TGTTGCGCTTCCATCCCACCGCGGCCAACGTGCTGGCCAGCGTCAGCGCG
GACGGAATGATCAAGCTgtgggacgtggagggagggcaggagggagggca
gtgcCATGTGCACCAGCAACTGGTCCAAGACGTTCAGTGGGACTACCGGG
GGAACACGTTTGCGACCACATGCAAGGACAAGGTCCTGCGGGTCCTGGAt
gggcggacggggcggtTGGGGttggagaggaaggatgCACACGAAGGGTC
TAAGAGCAGCAAGTGCGTCTTTCTCGGGGACCGAGAGATGCTGCTAACAG
TCGGCTTCACCAAACAAAGTCGCCGTCAGCTCAAGATATGGGACCTAAAG
AATCTGAAGCAGGAGGTGAAGACCCTGGACATCGACcaggcggcgggcgc
caTCATGCCTTTCTTCGACTCCGACACCAacctcctctacctcgctGGCA
AGGGCGACGGCAATATCCGCTACTACGAGATTGTCTCGGAAGCCCCCTTT
GTCTTTCCCATCTCCGAGTATCGCTCCACTACCCCCTCCAAAGGCTGTTG
CTTGGTGCCCAAGCGCGGGTTGAACGTGCTCCGCTGCGAGACCGCTCGTG
TCCTCAAGCTCACCACTAGCAGCGTGGaacccctctccttcatcgTCCCC
CGCAAGGGCGGCTTTTTCCAGGACgaccttttccccccctcaaTGGCGGG
CCTTCCCTCGCATTCGGCACCGGAATGGTGGGCAGGCTCTGATAAGGCGC
CCTTGCTCATGTCTTTGGACCCCGCggtcagggagggcgggaaggagggt
gggaaggataTGGGGTGGAGAGGGGTAGGCTCGCCGTTGGGGTCATCAGG
AGGCAGCCTTGGGAACCGTCCGCcatcggggggagggaggaccacGGGAC
AGCTGCAAAAGGAGCTGGACGTGGCTTTGGCGAGGATCTCGTTGTTGGAA
AGCCGACTGAAAGCTGCAGGACTGGAGTGTTCTTGAATGTCTCATTTCGT
CCGCGCATCCAAATATCGGCATGTATATGTTCAGCCCCCGAAAACCGGAG
AGGCTTACTCGAACATCCGTCTATCGACCGCTGTGGGGGAGCAGAATTAC
ATCAAAGCCAACCCAAAGTACTTTGCAGTGGCCCTCTCGggcggtggagg
accaTTCACGTGCATCCCCTTCGAAGCAATTGGTgctctccccgccgccc
cgccAGTTTTCAGCGGCCATACTTCGAATGTCCTCGACTTCgatttctct
ccctttcatgACCATCTGATCGCATCAGGTGCTGAGGACACTACCGTGAA
GGTCTGGGGCATACCTGAAGGAGGGTTGAAAGAAAGTATCGCCGAGCCCT
TGGTCGACTTGCGTGCCCACGAAAGAAAGGTTACTTTGTTGCGCTTCCAT
CCCACCGCGGCCAACGTGCTGGCCAGCGTCAGCGCGGACGGAATGATCAA
GCTgtgggacgtggagggagggcaggagggagggcagtgcCATGTGCACC
AGCAACTGGTCCAAGACGTTCAGTGGGACTACCGGGGGAACACGTTTGCG
ACCACATGCAAGGACAAGGTCCTGCGGGTCCTGGAtgggcggacggggcg
gtTGGGGttggagaggaaggatgCACACGAAGGGTCTAAGAGCAGCAAGT
GCGTCTTTCTCGGGGACCGAGAGATGCTGCTAACAGTCGGCTTCACCAAA
CAAAGTCGCCGTCAGCTCAAGATATGGGACCTAAAGAATCTGAAGCAGGA
GGTGAAGACCCTGGACATCGACcaggcggcgggcgccaTCATGCCTTTCT
TCGACTCCGACACCAacctcctctacctcgctGGCAAGGGCGACGGCAAT
ATCCGCTACTACGAGATTGTCTCGGAAGCCCCCTTTGTCTTTCCCATCTC
CGAGTATCGCTCCACTACCCCCTCCAAAGGCTGTTGCTTGGTGCCCAAGC
GCGGGTTGAACGTGCTCCGCTGCGAGACCGCTCGTGTCCTCAAGCTCACC
ACTAGCAGCGTGGaacccctctccttcatcgTCCCCCGCAAGGGCGGCTT
TTTCCAGGACgaccttttccccccctcaaTGGCGGGCCTTCCCTCGCATT
CGGCACCGGAATGGTGGGCAGGCTCTGATAAGGCGCCCTTGCTCATGTCT
TTGGACCCCGCggtcagggagggcgggaaggagggtgggaaggataTGGG
GTGGAGAGGGGTAGGCTCGCCGTTGGGGTCATCAGGAGGCAGCCTTGGGA
ACCGTCCGCcatcggggggagggaggaccacGGGACAGCTGCAAAAGGAG
CTGGACGTGGCTTTGGCGAGGATCTCGTTGTTGGAAAGCCGACTGAAAGC
TGCAGGACTGGAGTGTTCTTGAATGTCTCATTTCGTCCGCGCATCCAAAT
ATCGGCATGTATATGTTCAGCCCCCGAAAACCGGAGAGGCTTACTCGAAC
ATCCGTCTATCGACCGCTGTGGGGGAGCAGAATTACATCAAAGCCAACCC
AAAGTACTTTGCAGTGGCCCTCTCGggcggtggaggaccaTTCACGTGCA
TCCCCTTCGAAGCAATTGGTgctctccccgccgccccgccAGTTTTCAGC
GGCCATACTTCGAATGTCCTCGACTTCgatttctctccctttcatgACCA
TCTGATCGCATCAGGTGCTGAGGACACTACCGTGAAGGTCTGGGGCATAC
CTGAAGGAGGGTTGAAAGAAAGTATCGCCGAGCCCTTGGTCGACTTGCGT
GCCCACGAAAGAAAGGTTACTTTGTTGCGCTTCCATCCCACCGCGGCCAA
CGTGCTGGCCAGCGTCAGCGCGGACGGAATGATCAAGCTgtgggacgtgg
agggagggcaggagggagggcagtgcCATGTGCACCAGCAACTGGTCCAA
GACGTTCAGTGGGACTACCGGGGGAACACGTTTGCGACCACATGCAAGGA
CAAGGTCCTGCGGGTCCTGGAtgggcggacggggcggtTGGGGttggaga
ggaaggatgCACACGAAGGGTCTAAGAGCAGCAAGTGCGTCTTTCTCGGG
GACCGAGAGATGCTGCTAACAGTCGGCTTCACCAAACAAAGTCGCCGTCA
GCTCAAGATATGGGACCTAAAGAATCTGAAGCAGGAGGTGAAGACCCTGG
ACATCGACcaggcggcgggcgccaTCATGCCTTTCTTCGACTCCGACACC
AacctcctctacctcgctGGCAAGGGCGACGGCAATATCCGCTACTACGA
GATTGTCTCGGAAGCCCCCTTTGTCTTTCCCATCTCCGAGTATCGCTCCA
CTACCCCCTCCAAAGGCTGTTGCTTGGTGCCCAAGCGCGGGTTGAACGTG
CTCCGCTGCGAGACCGCTCGTGTCCTCAAGCTCACCACTAGCAGCGTGGa
acccctctccttcatcgTCCCCCGCAAGGGCGGCTTTTTCCAGGACgacc
ttttccccccctcaaTGGCGGGCCTTCCCTCGCATTCGGCACCGGAATGG
TGGGCAGGCTCTGATAAGGCGCCCTTGCTCATGTCTTTGGACCCCGCggt
cagggagggcgggaaggagggtgggaaggataTGGGGTGGAGAGGGGTAG
GCTCGCCGTTGGGGTCATCAGGAGGCAGCCTTGGGAACCGTCCGCcatcg
gggggagggaggaccacGGGACAGCTGCAAAAGGAGCTGGACGTGGCTTT
GGCGAGGATCTCGTTGTTGGAAAGCCGACTGAAAGCTGCAGGACTGGAGT
GTTCTTGAATGTCTCATTTCGTCCGCGCATCCAAATATCGGCATGTATAT
GTTCAGCCCCCGAAAACCGGAGAGGCTTACTCGAACATCCGTCTATCGAC
CGCTGTGGGGGAGCAGAATTACATCAAAGCCAACCCAAAGTACTTTGCAG
TGGCCCTCTCGggcggtggaggaccaTTCACGTGCATCCCCTTCGAAGCA
ATTGGTgctctccccgccgccccgccAGTTTTCAGCGGCCATACTTCGAA
TGTCCTCGACTTCgatttctctccctttcatgACCATCTGATCGCATCAG
GTGCTGAGGACACTACCGTGAAGGTCTGGGGCATACCTGAAGGAGGGTTG
AAAGAAAGTATCGCCGAGCCCTTGGTCGACTTGCGTGCCCACGAAAGAAA
GGTTACTTTGTTGCGCTTCCATCCCACCGCGGCCAACGTGCTGGCCAGCG
TCAGCGCGGACGGAATGATCAAGCTgtgggacgtggagggagggcaggag
ggagggcagtgcCATGTGCACCAGCAACTGGTCCAAGACGTTCAGTGGGA
CTACCGGGGGAACACGTTTGCGACCACATGCAAGGACAAGGTCCTGCGGG
TCCTGGAtgggcggacggggcggtTGGGGttggagaggaaggatgCACAC
GAAGGGTCTAAGAGCAGCAAGTGCGTCTTTCTCGGGGACCGAGAGATGCT
GCTAACAGTCGGCTTCACCAAACAAAGTCGCCGTCAGCTCAAGATATGGG
ACCTAAAGAATCTGAAGCAGGAGGTGAAGACCCTGGACATCGACcaggcg
gcgggcgccaTCATGCCTTTCTTCGACTCCGACACCAacctcctctacct
cgctGGCAAGGGCGACGGCAATATCCGCTACTACGAGATTGTCTCGGAAG
CCCCCTTTGTCTTTCCCATCTCCGAGTATCGCTCCACTACCCCCTCCAAA
GGCTGTTGCTTGGTGCCCAAGCGCGGGTTGAACGTGCTCCGCTGCGAGAC
CGCTCGTGTCCTCAAGCTCACCACTAGCAGCGTGGaacccctctccttca
tcgTCCCCCGCAAGGGCGGCTTTTTCCAGGACgaccttttccccccctca
aTGGCGGGCCTTCCCTCGCATTCGGCACCGGAATGGTGGGCAGGCTCTGA
TAAGGCGCCCTTGCTCATGTCTTTGGACCCCGCggtcagggagggcggga
aggagggtgggaaggataTGGGGTGGAGAGGGGTAGGCTCGCCGTTGGGG
TCATCAGGAGGCAGCCTTGGGAACCGTCCGCcatcggggggagggaggac
cacGGGACAGCTGCAAAAGGAGCTGGACGTGGCTTTGGCGAGGATCTCGT
TGTTGGAAAGCCGACTGAAAGCTGCAGGACTGGAGTGTTCTTGA
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Synonyms
Publications