rna6491, rna6491 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6491
Unique Name	rna6491
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2445
Alignment location	CM002468.1:629964..631676 +

Link to JBrowse

Properties


Property Name	Value
Product	homoserine dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100253g6.9432.mrna
Orig protein id	gnl\|cribi\|Naga_100253g6.9432
Gene	HSDH
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:629964..631676 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
HSDH	gene6271	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6491	rna6491-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24201.1	cds6475	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:629964..631676+
coding sequence from alignment at CM002468.1:629964..631676+

mRNA sequence

>rna6491 ID=rna6491|Name=rna6491|organism=Nannochloropsis gaditana|type=mRNA|length=2445bp
AAAAAACGAAATCTTATCCTTTTACTTATTAATACAAAGTATTCATGATT
CACTCGCTACAATTAGCGTTCTCGCAAAGCATATGCTGTTAGTAAGACAA
TGTCTGTCGGTATTCTTGTTCGTTTGGTACCCCATACCATTCTCCTGCCC
CTTTAAGACAGGGTTCGACGACGGGACTACCACAACAAGGACATTACTCT
AAAGATATTGATAGCGCCATAGTGGATCTGGACGGCTGCATGAATCATGG
GCTTGGATGATTTTGAAGTTATTCAAGGTCTGGGGAAGGGTGCCTTTGCC
CGCGTCGACAAGGTGAAACGCAAGATAGACGGAAAAGTGTATGCACTCAA
GCGCGTGAATATCTCGACAATTCCTCCCAAGGTATGTCCTTGAACCTGAG
AGGGGCATGGCTTCGGCAAAGAGGAATGTCGAATGTTCGCTCCCCCCGCG
ATATGATCCTTGATGCCAGGTTGCCTTTCATATTCGCTTTCACGAATCTC
GACTTCCAAACTCTCGAAAGGACCTTGAGGACTCCCTGAATGAGATTCGC
ATCCTCGCTTCATTCAAGCATCCCCGCCTGATCCGCTGGTACGAGACATT
CGTCGAAAACGCAAAAGAAGAGCTTTGCATCGTCATGGAATTGTGTCCGT
ACGGCGACCTTGAACAGAAAATCAAAAGGCACAAACATCGCAAGCAATAC
ATCGACGAGCGAGAGATCTGGGTGTACGCCGTGAACCTGTTGGAGGGCCT
GGCGGCCTTACATTCCAAGGGCGTCGTGCATCGAGACTTAAAGCCGGCTA
ACTGTCTCATCGACAGTCAGGGATGCGTCAAAATTGCAGACATGAACATC
TCCAAAGTTTCAAAGGGAGGGAACATGCAAACGCAGGTGGGCACTCCCTA
TTTCATTTGTCCGGAGATCTATCTGAAGCGGCCCTACACGTCCACATCCG
ACATCTGGTCCCTAGGGGGTGTCCTCTACAACCTGGCTGCCCTGCGCCCA
CCCTTCCTGGCGGACAACATTCAAAAACTCCGCCGAGTCGTGATACGGGG
CTCCTTCGACCCCCTTCCAAGCGTATTCGGCCAAAGCCTGACCACTCTGA
TCGGCCAATTGCTTCAAATCAATCCCTCCGATCGCCCCGAAGCCAAGGAG
ATACTGAAAGACCCCTTGGTGGAGCGCCACAAATACCTCCTTCTCCACCC
GCTCCCCGCCGGCCAGGAGGAGGCGGAGGGAGAGATGCTCCCCACCATCC
GGGTCGCCTCGGACAAGGAGGGCACCAAGACCATCCGGTTGCCTGGCCCT
GCCTACGAAGAAGAGGAGACCGGGGCAGGAACACGTGCGGGAAAGGAAAG
GGGGGCGCGCGACCGCCCTCCAAGCCCTCGGTCGCCCACCAGTGTCTTTG
TCGTTTCCAGTCCACGCGCCAAAGACAAGGCCAACAGCCCCGCCAGCCAT
CCAGCCAGGGAGTCCACTAGCCCTAGTAATAGCTCCGCAGGCTCGGCTGC
GAGGACGGAGCCCGCCCCTCGGGTACAGTCCAGTCCTCCAGCAGACGCCC
CACGCCGTCCCCCACGCTCTTCCCCCCCGCCCTCCTCCCCACCAACCTCA
CCGTCGCAGCTTCCAATGGGAGGCCGCCTCTCCCCCCTCAAGACACCCTC
GCCTACCCAGATACTTCCCTCCTTCCCCTTTGCCTCTCCCAAGGTGGGCG
GATCCAAGCCCTCGAGCCCTTCCAACGGCACCTCAACAGCTCCAACGGCC
GCGCCCGGCTCGCCTCCTCGCAGCGGCTCCCCCTTGTCCTCCCTCTTGCC
TGCTCTGCAAGACATGGGCCGGGACATGGTGCGGCATTTGCCGGTCCGAC
CTCCGGGTATGAAAGTGTCGAAGGAGGAAAAGGCGCGCCTGGCCGCCATC
GCCGCGGGTGAATATGGAGGGGGGGCGGTCTTCATTGACACCGGCGAGTA
CGACGATGTCGGTGACGTGGCAGGGTCGCCCGCCACGAGCACGTCGGTGG
GAGGCAAGGCGAAGAGGAGCAGCATCCGGAGGGTCTTCGATGGGGAGGGG
CTGCCGTCGTTTCCCACCTTGGAGGCCTTTCCCGTGGCCGAGGTGAAGAA
TTTCTTCGCCAACGCGAACGGACGTCGAACCCCCCCGCCGGGCGAAAAGC
CCGACATGGAGGAGTGGCGCCTGTGACGGTGCCTGGGGCTGCGGGGATGT
GTCGGACATCTGAGGGAAGACGAGGAGAATGGCACAATCAGGTGGGGGAT
GCATTGTTGCGGGAAGGACAGGGATGCACATCGTGCGAGGCGGGTGAAAA
TGAAGCATTTGCGTGGGGGGCTTCGAAGAGGGCGTGGGGAGTAGGGCGTT
AGTTTCCGTGTTGGAAATCGATTCGACAAGCAAAGTAAGAGGGCACAGCA
CCGAGAAAGAGGATGACTTGCCACAATTTTTTTCTTATACATTGA

protein sequence of rna6491

>rna6491-protein ID=rna6491-protein|Name=rna6491|organism=Nannochloropsis gaditana|type=polypeptide|length=425bp
MSSSLIVGLVGGGTVGGGVYDIVEHTHKDFFRSLGAHVQVKRIAVRNLTK
QRDFSVAAHTELVGDWRLVLDDPEINTVIEVMGGITEAKEVVFGAIAKGK
HVITANKALLAAYLPEIVDLLKKHPQVKLGYEAAVCGGIPIIHTLQNDYL
GDQVSQILGIMNGTTNFMLTKMESGADYGQVLAEAQALGYAEADPTADVE
GHDVQAKIALLAKLAFGVHVPSDQIPTKGISSVASVDFEYARLLNATIKL
LGMAQLSPDGKKLSVAVSPFIVPREHPIAGTNGSTNIVNISSRNLVSSSY
IGPGAGRYPTANSIVSDLVRLARGLVGPPFPVDRAMPLEPDYTSRFYIRL
RIRDQLGVIRVVGEIAERHGVSIYAILQNPISDPNDIHFVVTTEPARHSQ
VQAFADDIEKQDFTKGPPLFFAFLL

mRNA from alignment at CM002468.1:629964..631676+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6491 ID=rna6491|Name=rna6491|organism=Nannochloropsis gaditana|type=mRNA|length=1713bp|location=Sequence derived from alignment at CM002468.1:629964..631676+ (Nannochloropsis gaditana)
CCCCTCTGAGACGCCATGGATCTTGATAAATGTCTCATTGTACCGTGTAG
CATAAGATATTGCACCTATAGGCATCGCAATCTACCTGTCAAAGATACAT
AGCCTTCAAATTGTCCGCTCATGAACTTAGTAACGCATTATCTGAAGACC
TTCCCGCCGCACCGTCACCGCCACACAATTCGTTAGGATTCTATTGCGTG
CACTGAACCCTGGCCCCTCCATTACGACGCCTGCAGCTTTTGACACGGCA
TTTATCGTCCTTTCACGTGGAACCCTCTCGCATACCCTGCATTGCTCCTC
ATATAATGTCCTCTTCGTTAATTGTCGGCCTGGTGGGCGGCGGGACTGTC
GGCGGGGGGGTTTACGACATCGTCGAACATACGCACAAAGACTTCTTTCG
TTCCCTGGGGGCGCACGTGCAAGTGAAACGAATCGCGGTTCGAAACCTGA
CAAAGCAACGGGACTTCTCCGTGGCGGCTCACACCGAATTGGTTGGTGAC
TGGCGGCTGGTGCTGGACGATCCCGAGATCAACACGGTGATCGAAGTCAT
GGGCGGTATCACAGAAGCCAAAGAGGTGGTCTTTGGGGCGATTGCGAAAG
GAAAGCATGTGATTACGGCGAACAAAGCACTCCTGGCTGCCTACCTTCCC
GAGATTGTGGACCTTCTGAAAAAACATCCTCAGGTCAAATTAGGGTACGA
AGCGGCTGTGTGTGGCGGCATCCCCATCATCCACACCCTGCAGAACGACT
ATCTGGGGGATCAAGTCTCCCAGATCCTTGGGATTATGAACGGTACGACG
AACTTCATGCTGACGAAGATGGAGAGTGGCGCGGATTACGGCCAGGTCCT
TGCCGAGGCACAAGCATTGGGCTACGCCGAGGCCGACCCCACAGCCGACG
TGGAAGGGCATGACGTGCAGGCTAAAATTGCCCTGCTTGCAAAGCTCGCT
TTCGGAGTGCACGTTCCTTCGGACCAGATTCCCACAAAAGGAATTTCGTC
TGTGGCCTCTGTGGATTTCGAGTACGCGCGCCTTTTGAACGCCACCATTA
AATTGTTGGGGATGGCTCAACTTTCGCCGGACGGGAAAAAGCTTTCGGTG
GCAGTCTCGCCTTTCATTGTTCCTCGAGAACATCCCATCGCTGGGACGAA
CGGATCCACGAATATTGTCAACATTTCTTCGCGAAACTTGGTGTCTTCCT
CTTACATCGGCCCCGGGGCAGGACGCTATCCCACGGCGAACAGTATCGTC
AGTGACCTCGTGCGCCTTGCTCGTGGCTTGGTtggcccgcccttccccgt
gGATCGCGCCATGCCCCTCGAACCGGACTACACATCACGCTTTTACATCC
GACTTCGAATCAGGGATCAGCTGGGCGTGATTCGTGTGGTGGGCGAAATA
GCAGAGAGGCATGGCGTCTCTATCTATGCCATCCTACAGAACCCCATCTC
TGACCCGAACGACATTCATTTCGTCGTTACGACAGAGCCCGCTCGCCATT
CGCAGGTACAGGCTTTTGCGGATGACATCGAAAAACAGGACTTCACCAAG
GGCCCACCTCTCTTCTTCGCATTTTTGCTTTGAAGACTAAGTGCATGGGG
ATGATGGGGCAAGAAGCTTGCGGAGTAACGAAAATGGAAAAACAATTTGA
AGCTGAAATTATTGAACGCTGGAGATCAACTTGAAAGGAACTCAAGTGAA
AATGGAGATCTTT

Coding sequence (CDS) from alignment at CM002468.1:629964..631676+

>rna6491 ID=rna6491|Name=rna6491|organism=Nannochloropsis gaditana|type=CDS|length=1278bp|location=Sequence derived from alignment at CM002468.1:629964..631676+ (Nannochloropsis gaditana)
ATGTCCTCTTCGTTAATTGTCGGCCTGGTGGGCGGCGGGACTGTCGGCGG
GGGGGTTTACGACATCGTCGAACATACGCACAAAGACTTCTTTCGTTCCC
TGGGGGCGCACGTGCAAGTGAAACGAATCGCGGTTCGAAACCTGACAAAG
CAACGGGACTTCTCCGTGGCGGCTCACACCGAATTGGTTGGTGACTGGCG
GCTGGTGCTGGACGATCCCGAGATCAACACGGTGATCGAAGTCATGGGCG
GTATCACAGAAGCCAAAGAGGTGGTCTTTGGGGCGATTGCGAAAGGAAAG
CATGTGATTACGGCGAACAAAGCACTCCTGGCTGCCTACCTTCCCGAGAT
TGTGGACCTTCTGAAAAAACATCCTCAGGTCAAATTAGGGTACGAAGCGG
CTGTGTGTGGCGGCATCCCCATCATCCACACCCTGCAGAACGACTATCTG
GGGGATCAAGTCTCCCAGATCCTTGGGATTATGAACGGTACGACGAACTT
CATGCTGACGAAGATGGAGAGTGGCGCGGATTACGGCCAGGTCCTTGCCG
AGGCACAAGCATTGGGCTACGCCGAGGCCGACCCCACAGCCGACGTGGAA
GGGCATGACGTGCAGGCTAAAATTGCCCTGCTTGCAAAGCTCGCTTTCGG
AGTGCACGTTCCTTCGGACCAGATTCCCACAAAAGGAATTTCGTCTGTGG
CCTCTGTGGATTTCGAGTACGCGCGCCTTTTGAACGCCACCATTAAATTG
TTGGGGATGGCTCAACTTTCGCCGGACGGGAAAAAGCTTTCGGTGGCAGT
CTCGCCTTTCATTGTTCCTCGAGAACATCCCATCGCTGGGACGAACGGAT
CCACGAATATTGTCAACATTTCTTCGCGAAACTTGGTGTCTTCCTCTTAC
ATCGGCCCCGGGGCAGGACGCTATCCCACGGCGAACAGTATCGTCAGTGA
CCTCGTGCGCCTTGCTCGTGGCTTGGTtggcccgcccttccccgtgGATC
GCGCCATGCCCCTCGAACCGGACTACACATCACGCTTTTACATCCGACTT
CGAATCAGGGATCAGCTGGGCGTGATTCGTGTGGTGGGCGAAATAGCAGA
GAGGCATGGCGTCTCTATCTATGCCATCCTACAGAACCCCATCTCTGACC
CGAACGACATTCATTTCGTCGTTACGACAGAGCCCGCTCGCCATTCGCAG
GTACAGGCTTTTGCGGATGACATCGAAAAACAGGACTTCACCAAGGGCCC
ACCTCTCTTCTTCGCATTTTTGCTTTGA

Synonyms

Publications