rna6484, rna6484 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6484
Unique Name	rna6484
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3238
Alignment location	CM002468.1:612426..613535 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100217g3.6976.mrna
Orig protein id	gnl\|cribi\|Naga_100217g3.6976
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:612426..613535 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100217g3	gene6264	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24207.1	cds6468	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6484	rna6484-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:612426..613535-
coding sequence from alignment at CM002468.1:612426..613535-

mRNA sequence

>rna6484 ID=rna6484|Name=rna6484|organism=Nannochloropsis gaditana|type=mRNA|length=3238bp
CGATGCCACAGGCACACAAGAGGGAAAGAATGCAGCGGAGCACATCATTT
GTGTCCTTCAAAGTTAAGACATGGACTAATGCATGTTGCACAATTTATTA
ATTATGTACATCACCTCATAGTTGTCTCAATCGCGGTGTCATTTCATCCG
ACGCTCGACCAGTGGCAAAAAGGACGGGTGTGCAAAGCTTCGATATACGA
GTAACCCATAAAGTAGGTGATTTGGGATTTACAGGCATGTCAGCACCCGG
TATCAAGTCGAAAGCCGACATTTTAAAACGCTACCTCTCCTCCTCTACCA
GCGACGCTAACGAGGTGATGAAGACGAAGAGAAAACGAAAAAAGAAGGCC
GCTGTCCTGACGGGAGGAGTGCGGGTGGTGGATGCTGACGAATGGGGGGA
GGCGGGGCAGAGGGACGGGAGCAACGACGAAGGTAGGTTGTGTGAAGCAT
CCAGAGGAATTGGGAGTCAGGCCTTCATGGCAAGGAAAACAAAGATGAGT
CGGTGTCATGTGTGGGCTTATGGTACGGTAGTCCATGCAGCCTCTGCGTG
TCCTCACCCTTCTCCTCGCCTACTCACCTTGACTCCCTCCGGTAGGAGAC
GGACCGTTGATTGTGGACGACAAGGGCGACCAGGTCACGGCCGCTGGCAT
GGGTAGAAGGGGTTCTTGTGCGACACAGGCGGGCGCACAGGATCTGTCCC
CACCCCGTCGCCCTCGCTCCGCCGGCCCCCAAGGCGACGTCTCCCCTCCC
CGCAGGACGCGCCCCGAGCGCCTGCCTGGCACCGACGCCTCGTCCCCCCG
GCGACCTCGCCGCCGCAGTCCTTCTGTTTCCCCATTCGATCCTTCCTGTC
GTTCGAACACCACTTCTGGAGAGCCCTCCCGTCCTCACCAACCTCGGCCC
AGCCCTTCCCCTTCCAGAGACCCAGGGCCCGAGGGCGGGGACATTTCCCC
CCCCCGCCGCAGGCGCCGGCATGACAGTCCCTCTCCTCTGCGCCGCAGAC
GCCGGCACGACACTCCCTCCCCTTCCCCCACCAGGGACGGCGACCCTCCC
AAGCGTGGCGGCCAGGGCACTCGGGACGACCGTGGAGCGGTGGCAGTCGC
CGTGGTCTCGGAGTCGGGGAAGACCGCATCGACGAGGCCCAAGGAGGACG
GGCTCAAGACAGGGGCCGAATTTCGGGCCGAGCTGGAGGCGCAGAAGGAT
GCCGAGGCGCACGCCTGGGCGGAGGGCGCCAAAGACGCAGGTGTGACCGG
CCAACACGCCGAGACGGTGGTCCGTGATCGTCGGGGGCGAAAGTTGGAGA
TGCTCAGCGAGTTTTTGAACCAGGAGGCGTACAAGGAGGGGAAGGCGGCC
AAGGAGGCGAAGGAGGAGTACGAGTGGGGGCGAGGGAAGGTGCAGAAGGA
GAAAGATGAGGATCATCGGCGGGAGCTGGAAGACATCAAGAATGCGCCGT
TCGCCCGCTATGAAAGCGACCTTAAACTTGAGCGGGCACGCAAAGAAGAG
ATTCGGGCGGACGATCCCATGGCGGCGTACATGCTTCAGAAGCAACGTGA
CGCCCTTGCGCAAGAGGCGACAAGAAGTGGAAAAGTTCTTAAGCCGGAAT
ATAAAGGGCCGCCGCCCAAGCCGAATCGGTTCAATATCCGTCCTGGGTAT
CGATGGGACGGCATCGATCGTGGGAATGGGTTTGAGGCGAGGTGGTTTAA
GCGGCAGAGCGAGCTCGTGACCAAACACGAGAGGGACCGTGCATGGGGCA
TGTCGGATTTGTAAAAAGGACAGCGACACGAAAACATTAACGTGGACGTC
AGACTGTCATTTTCCGCGCGATACCGTATTTCTTTTCAACTATCTTTTAG
CTGTTTCAGTCACTATGTCCTCGCCCATCAGGTCGCAGCCCCTGCTCTCA
CGTCCTTGTGGACATTTCACGAATTTCGGTGCAACAGATATACTTACATA
CCCATGTTATTCGATCCCATGCCGGCATGGAAACAATTTTGAGAATTTAC
CAACTTCCCGACCCTATCTTGCAATGGTTCAACTGTTGCTGACTGTGGTG
TTTCCTTGCGACGATGACGACGACATGAATCCGCTTCACAATCCTCCAAG
CACCCGTTATATTGTGAGCGGACACAATTTGGCTTTTAATGTTTGATTCT
TGAGCTTGTAAGGTGGTATCATTCCCATTTTACGCGTATTATTCCGTCCA
GTTTCCCGCTCCCAGGGTCGACCTCAGGCTCGTCGCTAGAAAGAAAGAAG
GCGAGCAAAAAACACACTGAAGGACAAAAATGAAGGCTCAACAAAGTGAT
GGGATCATTCTGTGAAGCTCACAATCGACGAGAAGAACCAACAGTGCCCT
TTCCGTTGGTAGCACTGGTGGATTTGGAATCTCCCCATGAACGGGGCAAA
TTTCATGAAGCGGGATAAGGAATGGCACGAAGCCTTGGAGGGTACGTTTA
TGGGGGCACGTGCTTTAATCACCTATTTCCATTAAATTGGGGTTGTGAGT
CCGAGAAGCTCCTTTCTTTCTTGGCAGAGCCAATATATGCAGTTTAGAAG
GCGAGTATAGCTCTTGTCATGCGCCGCTTCGTAATGGAAGGCTTAATATT
CACATCCCGCTGGCGTGACTCCAGCATCCGAACTCAAACGAGTGTCCAAC
AAGGATAATACTCCAGAGTTATCTCATACGCCCATTTTCCCGAAAGCCAT
GCACGAAATATCCAAGATTCTCAACACAGGTCTGGATCGTGAGACGCTCG
CTATCCTGGTCAATTTGTGTGAGGCAGGCGTCAATCCTGAGGCCTTGGCC
CTCGTGGTGCAGGAGCTCCGGGGAGAGGCCGCTCGAAAGAGACAGCAGCT
AGGGCAGGGCAATGGAAGGAGTTGGTCAAGGCCACAAAATCAGTAATTCA
AGAAAAAGAGCTATGGATGGGATAGAATGGTGCCGAGACAGTGGCACTGT
TGATGAAACGTGCTTATGCTGTGTACAAAAAGAAAGTGTTACCTTGAGTC
GCCGGATCATAAGAGTTTCTTCATAATTGCCAACAATCGAGATACAAAAT
CAAATGAAATTTGTTAGAGAAGCCATCTCCGGAAATAAGCACGTCGTTAG
CTGCAGGCATTTAAAAATACTGGGTGTGCTTTGTCAGCTTACAAACAAGG
GAAGGAGCCTCGCCAGATCCGTCTCTCTATGTTTCCATGCTATTCCCGCT
GCTTTTCTTCGTACGGGTGCTTAACAAGCCTGTCGCCC

protein sequence of rna6484

>rna6484-protein ID=rna6484-protein|Name=rna6484|organism=Nannochloropsis gaditana|type=polypeptide|length=369bp
MPSGTKGYVASTRLWLTIGAGISLVATGALVMVYLFLAQQQGRPSAQSRT
KQQGADRSRVPGEEEELELSDIEDEDQISQEQSLVLPIYGRNSRQSRRRR
RRGDTAGVPHPRHAKRLLGPHILSYPKDIRLQHMTKIVIQTKEETFSRHR
CKSCWLLERHCLCDGLVPVSLPMDFSVLLHYKEFLRISNSGHLLALAHPG
SRLLVEGKEDDERKLSALEAAAVREPYSVVVLMPCAGSLSISELKQRREE
SGTTGRLHVILLDGTWRQARALNRRVSEKVVRVRVEVTEKPSMFRLRTRT
RADGISTLEAALSLVEEWGKEGRQEGEAGVAEMLRLLGVHNERVLVASGK
PAKVGDRLVKHPYEEKQRE

mRNA from alignment at CM002468.1:612426..613535-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6484 ID=rna6484|Name=rna6484|organism=Nannochloropsis gaditana|type=mRNA|length=1110bp|location=Sequence derived from alignment at CM002468.1:612426..613535- (Nannochloropsis gaditana)
ATGCCGTCAGGCACAAAGGGGTACGTTGCCTCCACGCGCCTGTGGTTGAC
CATCGGAGCCGGCATTTCACTTGTGGCAACTGGAGCTTTGGTAATGGTCT
ACTTGTTTTTGGCGCAGCAGCAGGGAAGGCCGTCAGCACAGTCACGAACA
AAGCAACAAGGAGCTGATAGGTCACGCGTGCCGGGGGAGGAAGAAGAATT
GGAGTTGTCTGACATTGAAGATGAAGATCAAATTTCGCAAGAACAAAGTC
TCGTTCTTCCTATTTATGGTCGCAACAGCAGGCAAAGCCGAAGACGCCGT
CGCCGGGGGGACACGGCTGGAGTCCCTCATCCGCGACACGCGAAAAGACT
GCTGGGCCCTCACATTCTCTCTTATCCCAAAGACATCCGCCTCCAGCATA
TGACTAAAATTGTCATACAAACCAAAGAGGAGACTTTCAGTCGGCACAGA
TGTAAAAGCTGCTGGTTACTAGAGCGGCACTGTCTCTGTGACGGACTTGT
GCCCGTCTCTCTGCCGATGGATTTCTCCGTCCTCCTTCATTACAAGGAGT
TTCTAAGGATTAGTAACAGCGGCCACCTTCTTGCCCTGGCACACCCAGGC
TCTCGACTCCTGGTCGAAGGGAAAGAAGACGACGAGCGAAAGCTCAGCGC
CTTGGAGGCCGCCGCAGTGCGAGAGCCTTACTCGGTGGTTGTCTTGATGC
CGTGCGCAGGCTCCTTATCAATATCCGAGCTAAAACAACGCCGGGAGGAG
AGCGGCACCACAGGTCGCCTGCACGTCATCCTCCTTGACGGTACTTGGCG
ACAGGCACGGGCGCTGAACCGGAGGGTAAGCGAGAAGGTGGTGAGGGTGC
GTGTTGAGGTGACGGAGAAACCGAGCATGTTCAGGCTACGAACCCGCACG
CGGGCCGACGGGATTTCCACCCTTGAAGCCGCCTTAAGTCTGGTAGAGGA
GTGGGGCAAAGAAGGGAGGCAGGAAGGCGAGGCGGGTGTGGCGGAGATGC
TGCGGCTGCTCGGCGTCCATAATGAGAGAGTGCTTGTGGCCTCGGGGAAG
CCTGCTAAGGTGGGCGACAGGCTTGTTAAGCACCCGTACGAAGAAAAGCA
GCGGGAATAG

Coding sequence (CDS) from alignment at CM002468.1:612426..613535-

>rna6484 ID=rna6484|Name=rna6484|organism=Nannochloropsis gaditana|type=CDS|length=1110bp|location=Sequence derived from alignment at CM002468.1:612426..613535- (Nannochloropsis gaditana)
ATGCCGTCAGGCACAAAGGGGTACGTTGCCTCCACGCGCCTGTGGTTGAC
CATCGGAGCCGGCATTTCACTTGTGGCAACTGGAGCTTTGGTAATGGTCT
ACTTGTTTTTGGCGCAGCAGCAGGGAAGGCCGTCAGCACAGTCACGAACA
AAGCAACAAGGAGCTGATAGGTCACGCGTGCCGGGGGAGGAAGAAGAATT
GGAGTTGTCTGACATTGAAGATGAAGATCAAATTTCGCAAGAACAAAGTC
TCGTTCTTCCTATTTATGGTCGCAACAGCAGGCAAAGCCGAAGACGCCGT
CGCCGGGGGGACACGGCTGGAGTCCCTCATCCGCGACACGCGAAAAGACT
GCTGGGCCCTCACATTCTCTCTTATCCCAAAGACATCCGCCTCCAGCATA
TGACTAAAATTGTCATACAAACCAAAGAGGAGACTTTCAGTCGGCACAGA
TGTAAAAGCTGCTGGTTACTAGAGCGGCACTGTCTCTGTGACGGACTTGT
GCCCGTCTCTCTGCCGATGGATTTCTCCGTCCTCCTTCATTACAAGGAGT
TTCTAAGGATTAGTAACAGCGGCCACCTTCTTGCCCTGGCACACCCAGGC
TCTCGACTCCTGGTCGAAGGGAAAGAAGACGACGAGCGAAAGCTCAGCGC
CTTGGAGGCCGCCGCAGTGCGAGAGCCTTACTCGGTGGTTGTCTTGATGC
CGTGCGCAGGCTCCTTATCAATATCCGAGCTAAAACAACGCCGGGAGGAG
AGCGGCACCACAGGTCGCCTGCACGTCATCCTCCTTGACGGTACTTGGCG
ACAGGCACGGGCGCTGAACCGGAGGGTAAGCGAGAAGGTGGTGAGGGTGC
GTGTTGAGGTGACGGAGAAACCGAGCATGTTCAGGCTACGAACCCGCACG
CGGGCCGACGGGATTTCCACCCTTGAAGCCGCCTTAAGTCTGGTAGAGGA
GTGGGGCAAAGAAGGGAGGCAGGAAGGCGAGGCGGGTGTGGCGGAGATGC
TGCGGCTGCTCGGCGTCCATAATGAGAGAGTGCTTGTGGCCTCGGGGAAG
CCTGCTAAGGTGGGCGACAGGCTTGTTAAGCACCCGTACGAAGAAAAGCA
GCGGGAATAG

Synonyms

Publications