EWM24207.1, cds6468 (CDS) Nannochloropsis gaditana

Overview
NameEWM24207.1
Unique Namecds6468
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:612426..613535 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24207.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100217g3.6976.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:612426..613535 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005636DTW
Homology
BLAST of EWM24207.1 vs. NCBI_GenBank
Match: gi|585105596|gb|EWM24207.1| (hypothetical protein Naga_100217g3 [Nannochloropsis gaditana])

HSP 1 Score: 746.503 bits (1926), Expect = 0.000e+0
Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 0
Query:    1 MPSGTKGYVASTRLWLTIGAGISLVATGALVMVYLFLAQQQGRPSAQSRTKQQGADRSRVPGEEEELELSDIEDEDQISQEQSLVLPIYGRNSRQSRRRRRRGDTAGVPHPRHAKRLLGPHILSYPKDIRLQHMTKIVIQTKEETFSRHRCKSCWLLERHCLCDGLVPVSLPMDFSVLLHYKEFLRISNSGHLLALAHPGSRLLVEGKEDDERKLSALEAAAVREPYSVVVLMPCAGSLSISELKQRREESGTTGRLHVILLDGTWRQARALNRRVSEKVVRVRVEVTEKPSMFRLRTRTRADGISTLEAALSLVEEWGKEGRQEGEAGVAEMLRLLGVHNERVLVASGKPAKVGDRLVKHPYEEKQRE 369
            MPSGTKGYVASTRLWLTIGAGISLVATGALVMVYLFLAQQQGRPSAQSRTKQQGADRSRVPGEEEELELSDIEDEDQISQEQSLVLPIYGRNSRQSRRRRRRGDTAGVPHPRHAKRLLGPHILSYPKDIRLQHMTKIVIQTKEETFSRHRCKSCWLLERHCLCDGLVPVSLPMDFSVLLHYKEFLRISNSGHLLALAHPGSRLLVEGKEDDERKLSALEAAAVREPYSVVVLMPCAGSLSISELKQRREESGTTGRLHVILLDGTWRQARALNRRVSEKVVRVRVEVTEKPSMFRLRTRTRADGISTLEAALSLVEEWGKEGRQEGEAGVAEMLRLLGVHNERVLVASGKPAKVGDRLVKHPYEEKQRE
Sbjct:    1 MPSGTKGYVASTRLWLTIGAGISLVATGALVMVYLFLAQQQGRPSAQSRTKQQGADRSRVPGEEEELELSDIEDEDQISQEQSLVLPIYGRNSRQSRRRRRRGDTAGVPHPRHAKRLLGPHILSYPKDIRLQHMTKIVIQTKEETFSRHRCKSCWLLERHCLCDGLVPVSLPMDFSVLLHYKEFLRISNSGHLLALAHPGSRLLVEGKEDDERKLSALEAAAVREPYSVVVLMPCAGSLSISELKQRREESGTTGRLHVILLDGTWRQARALNRRVSEKVVRVRVEVTEKPSMFRLRTRTRADGISTLEAALSLVEEWGKEGRQEGEAGVAEMLRLLGVHNERVLVASGKPAKVGDRLVKHPYEEKQRE 369          
BLAST of EWM24207.1 vs. NCBI_GenBank
Match: gi|528265813|gb|EPY39919.1| (hypothetical protein AGDE_04009 [Angomonas deanei])

HSP 1 Score: 92.0485 bits (227), Expect = 8.738e-17
Identity = 66/193 (34.20%), Postives = 97/193 (50.26%), Query Frame = 0
Query:  151 CKSCWLLERHCLCDGL------VPVSL---PMDFSVLLHYKEFLRISNSGHLLALAHPGSRLLVEGKEDDERKLSALEAAAVREPYSV--VVLMPCAGSLSISELKQRREESGTTGRLHVILLDGTWRQARALNRRVSEKVVRVRVEVTEK-PSMF-RLRTRTRADGISTLEAALSLVEEWGKEGRQEGEAGV 330
            C  CW   + C+C+ L      +P ++       ++L H  E +R +NSGH+ A     S + V G E+D+  ++ L      E ++V  V L P  GS  IS       E+G   R+H+IL D TW QA +LNR +  +V RV +++ E   S+F  LR RTR  G+STLEA    V +       E EA +
Sbjct:  139 CLFCWFSTQMCMCEELERYKKELPNTVLQGKTPVTMLFHSDELMRSTNSGHIAAYL-LDSPVRVWGLEEDDDLITHLPGVEEGEGHAVYNVSLYPEKGSPDISHFISNVTETGADARIHLILSDSTWGQALSLNRHIPREVTRVSLDIDETYESLFAHLRKRTRETGVSTLEATTMAVHQCLTAFGHEAEANL 330          
BLAST of EWM24207.1 vs. NCBI_GenBank
Match: gi|294948148|ref|XP_002785640.1| (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >gi|239899619|gb|EER17436.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983])

HSP 1 Score: 91.2781 bits (225), Expect = 2.439e-16
Identity = 72/245 (29.39%), Postives = 117/245 (47.76%), Query Frame = 0
Query:   92 NSRQSRRRRRRGDTAGVPH----PRHAKRLLGPHILSYPKDIRLQHMTKIVIQTKEETFSRHRCKSCWLLERHCLCDGLVPV--------SLPMDFSVLLHYKEFLRISNSGHLLALAHPGSRLLVEGKEDDERKLSALEAAAVREPYSVVVLMPCAGSLSISELKQRREESGT-----TGRLHVILLDGTWRQARALNRRVSEKVVRVRVEVTEKPSMFRLRTRTRADGISTLEAALSLVEEWG 319
            N +Q +  +R  + A + H    PR  +  +G  I +    + ++H               HRC  C + ++ C+CD L  +        +L  + +V +H KE  R SN+G +L   +  +R+ V+   +D   + AL+ A         VL P   S ++ EL+   E S         +L +IL+DGTW+QA+ L +R+   V RVR+  T   S F  RT+++AD + T+EAA  LV E G
Sbjct:   47 NKKQWKETKRPINCARIEHLSSLPREERERVGVAITTATSKLMIEH--------------SHRCAECAMKKKLCVCDELRSMRPMEDERLNLNFEIAVYMHAKERYRASNTGKVLEKLY-DARIYVDSVVED---MQALQEAIDAHKSRCCVLFPSTESKTVEELRSEGEASQAAHCEGNEKLLIILVDGTWKQAKRLQKRIDHSVPRVRLMPTTL-SRFLCRTQSQADRVCTVEAAALLVSELG 272          
BLAST of EWM24207.1 vs. NCBI_GenBank
Match: gi|1134876375|gb|OMJ74278.1| (hypothetical protein SteCoe_26832 [Stentor coeruleus])

HSP 1 Score: 85.8853 bits (211), Expect = 8.145e-16
Identity = 57/182 (31.32%), Postives = 91/182 (50.00%), Query Frame = 0
Query:  147 SRHRCKSCWLLERHCLCDGLVPVSLPMD--FSVLLHYKEFLRISNSGHLLALAHPGSRLLVEGKEDDERKLSALEAAAVREPYSVVVLMPCAGSLSISELKQRREESGTTGRLHVILLDGTWRQARALNRRVSEKVVRVRVEVTEKPSMFRLRTRTRADGISTLEAALSLVEEWGKEGRQEG 326
            S   C+ CWLL+  C+C  L  +S P +  F + LHYKE++R SN+G L+     GS + + G E++ +KL  L+    +E  ++ VL P   S+ +    + R+          ILLD TW Q R L   + E   RV++ V    S+ + + +     +STLE A  +++  G     EG
Sbjct:   22 SERWCEDCWLLKHLCICSNLASLSNPTNSTFHLFLHYKEYMRTSNTGILIKKLIQGSDVHIWGIEEERQKL--LKKLETQE--NICVLYPGDKSIPLETWIENRKGLAKD----FILLDSTWNQGRKLLNCLPENFTRVKI-VNPGDSLIKCKKQANKGYLSTLECAAYILKALGDAAGFEG 194          
BLAST of EWM24207.1 vs. NCBI_GenBank
Match: gi|857972777|emb|CEP00986.1| (hypothetical protein PBRA_008298 [Plasmodiophora brassicae])

HSP 1 Score: 85.1149 bits (209), Expect = 1.647e-15
Identity = 59/182 (32.42%), Postives = 91/182 (50.00%), Query Frame = 0
Query:  148 RHRCKSCWLLERHCLCDGLVPVS----LPMDFSVLLHYKEFLRISNSGHLLALAHPGSRLLVEGKEDDERKL-SALEAAAVREPYSVVVLMPCAGSLSISELKQRREESGTTGRLHVILLDGTWRQARALNRRVSEKVVRVRVEVTEKPSMFRLRTRTRADGISTLEAALSLVEEWGKEGRQ 324
            +H+C+ CW L ++C C+ +  VS     P    +L+H++E  R SNSG +L LA P +R  V G +  E  L   + A   R     V+L P  GS++  EL   R E G   +L +I+LDGTW  +RA++R +   + RVR+  + +      R     + + T  A L  + E G    Q
Sbjct:   30 KHKCQRCWFLAQNCACEAMERVSGSVFAPHRVLLLMHFRELCRASNSGRIL-LAPPSNRGFVFGMQAQESALIGEINAFKGRS----VILWPGPGSITFEEL---RCEPGE--QLQIIVLDGTWNNSRAMDRVLPRDIPRVRLSGSTRTEFGGTRKHKDKERVCTAGACLHALRELGAPPEQ 201          
BLAST of EWM24207.1 vs. NCBI_GenBank
Match: gi|955162684|emb|CUG93466.1| (Hypothetical protein, putative [Bodo saltans])

HSP 1 Score: 86.6557 bits (213), Expect = 6.059e-15
Identity = 76/239 (31.80%), Postives = 111/239 (46.44%), Query Frame = 0
Query:  145 TFSRHRCKSCWLLERHCLCDGLV-----------PVSLPMDFSVLLHYKEFLRISNSGHLLALAHPGSRLLVEGKEDDERKLSALE-----AAAVREPYSVVV-----LMPCAGSLSISEL------KQRREES-------------------GTTGRLHVILLDGTWRQARALNRRVSEKVVRVRVEVTEK-PSMF-RLRTRTRADGISTLEA-ALSLVEEWGKEGRQEGEAGVAEML 334
            T  R RC  CWL    C+C  L            P+S     ++LLH +E +R +N+GH+ A     S + V G  DD+  L+ +E       A   P SVV+     L P  G+  IS++      KQ+ +E+                   G   RLH+IL DGTW QA  +NR V   + RV +++ +   S+F  LR +TR+ G+STLEA AL++ +     G  E    V + L
Sbjct:  123 TMKRLRCVYCWLPNPSCVCGDLEKMRQMRQELLHPLSQVAIVTMLLHSEELMRTTNTGHIAAFIL-DSEIRVWGIADDDAWLAQVERHVQDTTATAMPASVVITHPALLYPEDGAQLISDVAFVEPEKQQGDETKSVAYSGAPSSPLAPLAATGMIHRLHIILSDGTWTQAHRVNRHVPRSIPRVALKIDDSYESLFASLRKQTRSTGVSTLEATALAVAQRMQAVGHAEDALLVEQHL 360          
BLAST of EWM24207.1 vs. NCBI_GenBank
Match: gi|342180379|emb|CCC89856.1| (conserved hypothetical protein [Trypanosoma congolense IL3000])

HSP 1 Score: 83.5741 bits (205), Expect = 4.038e-14
Identity = 61/211 (28.91%), Postives = 100/211 (47.39%), Query Frame = 0
Query:  151 CKSCWLLERHCLCDGLVPV---------SLPMDFSVLLHYKEFLRISNSGHLLALAHPGSRLLVEGKEDDERKLSALEA---------AAVREPYSVVVLMPCAGSLSISELKQRREESGTTGRLHVILLDGTWRQARALNRRVSEKVVRVRVEVTEK-PSMFR-LRTRTRADGISTLEAALSLVEEWGKEGRQEGEAGVAEMLRLLGVHN 341
            C  CW  +  C CD L              P + +V++H +E +R +NSGH++A    G+ L + G  +D+  L+ L+A         A+   P     L P +G+  + +  +  +   +  ++H++LLD TW QA ALNR +   + RV + + E   S+F+ LR +TR  G+ST EA    +++        G AG         VHN
Sbjct:   82 CLWCWFSKGLCFCDRLEEYRQRLLEAQRGTPPEITVVMHPEEIMRGTNSGHIIAFI-LGAPLRIWGVAEDDSYLNTLQAVDLVGNGYSASGETPLHTASLYPESGAPLLEDFVKGID---SAHKIHLLLLDATWSQANALNRHIPRHIPRVGLRIDESYSSLFKALRKQTRQSGVSTFEATSMALQQCCNSQHIGGNAGAV-------VHN 281          
BLAST of EWM24207.1 vs. NCBI_GenBank
Match: gi|686628121|ref|XP_009307135.1| (hypothetical protein DQ04_00371030 [Trypanosoma grayi] >gi|657145227|gb|KEG14617.1| hypothetical protein DQ04_00371030 [Trypanosoma grayi])

HSP 1 Score: 82.4185 bits (202), Expect = 1.118e-13
Identity = 68/206 (33.01%), Postives = 102/206 (49.51%), Query Frame = 0
Query:  151 CKSCWLLERHCLCDGLVP-----VSLPMDFSV----LLHYKEFLRISNSGHLLALAHPGSRLLVEGKEDDERKLSALEAAAVREPYSVVV-LMPCAGSLSISELKQRREESGTTGRLHVILLDGTWRQARALNRRVSEKVVRVRVEVTEK-PSMFR-LRTRTRADGISTLEAALSLVEEWGKEGRQEGEAGVAEMLRLLGVHNERV 344
            C  CW  +  C C  L       +S  +D +V    +LH  E +R +NSGH+ A    G+ + V G E+D+  L+ L A A  +  S  V L P   ++ +    Q  E+ GT  ++H++L DGTW QA ALNR +   + RV + +     S+F+ LR +TR  G+STLEA    +E+  +      EA V+    L     E V
Sbjct:   85 CLWCWFSKDMCFCAKLEEYREQMLSAELDSAVKVTMVLHAAEVMRTTNSGHIAAFIL-GAPIRVWGVEEDDAYLAELPAVAADDDGSYAVSLYPEPDAVLLENFVQNLEK-GT--KVHLVLSDGTWGQATALNRHIPHHIPRVALFIDRSYKSLFKALRKQTRETGVSTLEATNMAMEQCLRGLYGANEAAVSSSSTLTAAMKEFV 286          
BLAST of EWM24207.1 vs. NCBI_GenBank
Match: gi|1098427531|gb|OII75592.1| (hypothetical protein cubi_02113 [Cryptosporidium ubiquitum])

HSP 1 Score: 80.4925 bits (197), Expect = 2.616e-13
Identity = 54/197 (27.41%), Postives = 99/197 (50.25%), Query Frame = 0
Query:  150 RCKSCWLLER-HCLCDGL---------VPVSLPMDFSVLLHYKEFLRISNSGHLLALAHPGSRLLVEGKEDDERKLSALEAAAVREPYSVVVLMPCAGSLSI----SELKQRR---------EESGTTG------RLHVILLDGTWRQARALNRRVSEKVVRVRVEVTEKPSMFRLRTRTRADGISTLEAALSLVEE 317
            +C+SC+L+++ HC+C  L         V     + F + ++ +E+ R SN+G L+    PGS +L+ G      +L  + +  +      V+L P   S S+    S+LK+ +         E S  +       +L VIL+DGTW QA+++N+ + +++ R+ +          LR + +A  IST+EA+  L++E
Sbjct:   67 KCRSCFLVKKDHCICTNLSRLADQIKKVQTYPEIKFIIFMNDREYFRSSNTGKLVKHLIPGSEILIHGIPGSSERLEEILSQDLEIYNETVILYPSKDSKSVLDYFSDLKENKYFELLGKEPENSLFSTEFYRKLKLKVILIDGTWSQAKSINKSLPKQIKRIVINSKLISDFGPLRKQNKAGNISTVEASSLLIKE 263          
BLAST of EWM24207.1 vs. NCBI_GenBank
Match: gi|72387273|ref|XP_844061.1| (hypothetical protein [Trypanosoma brucei brucei TREU927] >gi|62360220|gb|AAX80638.1| hypothetical protein, conserved [Trypanosoma brucei] >gi|70800593|gb|AAZ10502.1| hypothetical protein, conserved [Trypanosoma brucei brucei TREU927])

HSP 1 Score: 81.6481 bits (200), Expect = 2.682e-13
Identity = 57/190 (30.00%), Postives = 95/190 (50.00%), Query Frame = 0
Query:  151 CKSCWLLERHCLCDGL---------VPVSLPMDFSVLLHYKEFLRISNSGHLLALAHPGSRLLVEGKEDDERKLSALEAAAVRE---------PYSVVVLMPCAGSLSISELKQRREESGTTGRLHVILLDGTWRQARALNRRVSEKVVRVRVEVTEK-PSMFR-LRTRTRADGISTLEA-ALSLVEEWG 319
            C  CW  +  C C+ L         +     ++ +++LH +EF+R +NSGH+ A    G+ + + G  +D+  L+ L A    E             V L P   +  + +  +     G+T R+H++L+D TW QA ALNR +   + RV + + E   S+F+ LR RTR  G+ST EA  ++L + +G
Sbjct:  170 CLWCWFSKSLCFCNRLEQYRQRMLEIGQHSAVEVTIVLHPEEFMRGTNSGHIAAFI-LGAPIRIWGVPEDDAYLNDLPAVRTEEGNYDFPSDDAIHTVSLYPEKDAFLLEDFVK---NIGSTHRVHLLLMDATWSQANALNRHIPRHIPRVALRIDESYASLFKALRKRTRQSGVSTFEATTMALQQCYG 355          
The following BLAST results are available for this feature:
BLAST of EWM24207.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105596|gb|EWM24207.1|0.000e+0100.00hypothetical protein Naga_100217g3 [Nannochloropsi... [more]
gi|528265813|gb|EPY39919.1|8.738e-1734.20hypothetical protein AGDE_04009 [Angomonas deanei][more]
gi|294948148|ref|XP_002785640.1|2.439e-1629.39conserved hypothetical protein [Perkinsus marinus ... [more]
gi|1134876375|gb|OMJ74278.1|8.145e-1631.32hypothetical protein SteCoe_26832 [Stentor coerule... [more]
gi|857972777|emb|CEP00986.1|1.647e-1532.42hypothetical protein PBRA_008298 [Plasmodiophora b... [more]
gi|955162684|emb|CUG93466.1|6.059e-1531.80Hypothetical protein, putative [Bodo saltans][more]
gi|342180379|emb|CCC89856.1|4.038e-1428.91conserved hypothetical protein [Trypanosoma congol... [more]
gi|686628121|ref|XP_009307135.1|1.118e-1333.01hypothetical protein DQ04_00371030 [Trypanosoma gr... [more]
gi|1098427531|gb|OII75592.1|2.616e-1327.41hypothetical protein cubi_02113 [Cryptosporidium u... [more]
gi|72387273|ref|XP_844061.1|2.682e-1330.00hypothetical protein [Trypanosoma brucei brucei TR... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6484rna6484Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications