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Properties
| Property Name | Value |
|---|
| Product | Bud13 |
| Orig transcript id | gnl|cribi|Naga_100217g5.6980.mrna |
| Orig protein id | gnl|cribi|Naga_100217g5.6980 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:608845..612474 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6482 ID=rna6482|Name=rna6482|organism=Nannochloropsis gaditana|type=mRNA|length=1846bp
TATCCTGAGCTCGATAGCGGCCCCACTACCCTCCTTCACCGGACTGGCAG
GGCCACGCCATGGTCTTAGCTACACACTTTGTCAGTATGCGCAAACATAT
GGGCATGCAAGGGCCAACAGGGCATCCCATTCGCCTTGATCGCTCACATA
AAAGTGTCTCGCCCGTCCCCCTCTCACTGCTGCCACACACCTTGCAGGGG
CCGAGGGAGCTCAGCGCTTGCGTACCCCCTTCCTAGCCCCATTAAACTTC
ACACACGGGGGCGGAGACCTGACTTCTGGACCAGCATAGCCATGAGTCCA
ACCTTTCGAAGAAGACATTCAAATGCCCCCTTCAAATTGCAGATATTTAT
GGTCAAATTTTTGGCGGTGGTCGCCCTCCTCGGATGTTGCTGTCTTCATG
GCGTTGCTTCCGGGACTCCCCCGCATGCCGCATTTGTTCCGAGAGCAAGT
ACGAAAAGCTTGGGTAATAGGCTCGCAAAAGCCCCACAAGCAAGACGAGA
GCAGACAATAATGCAGCTTTCTGCAAGAAGAAGTCGCTCCATGCGGCCAT
TGCCCTATCCTGTTCGTTTTGCGGTGCTTGGTGGGGGCTCCTTCGGGCTT
GCTTTGGCCTCCGTGCTGGGCAAAAAAAGCATTCCGGTCACGATACTGGT
GCGAAAAGAAGAAGTTGCCGAGCACATTAACCTACATCATCGTCATCCTA
CCTATCTCTCCGACATCGCTTTGGCACCCAGCATTCGCGCCACTGTGCAA
CCTGAGGAGGCGTTGAGAGACGCATCCTTCATCATCCACGCAGTCCCCGT
CCAGTACTCTCGGAAATTTCTTGAGGACATAGCCCCACATGTACCGAAGA
ATACGCCCATTATTTCCACGTCGAAGGGCATCGAGACGGGGACCCTCTGC
ATGATGCAGGACATCCTCTTGGAGACGCTGGGTCCGAATCGCGAGACCGC
GTACCTGTCGGGGCCCTCCTTTGCCCGGGAAATTGCCCTTGGTCTGGTTA
CGGCCGTTGTGGCGGCCAGTGAGTCGGAGGCTCTTGCCAATGAGATCTGC
GACATCATGGGCTGCAACTACTTCCGGGTATTTACCTCGACAGACGTGGT
GGGGGTGGAGGTTGGTGGTGCGGTCAAGAATGTCATTGCCATTGCGGCCG
GCATGTGTGAAGGGCTCGGGCTTGGGACGAATGCCATGGCCGCCCTAGTG
ACCAGGGGTTGCAACGAGATGCAAAGGCTGGCTTTGAGCCTAGGGGCGCG
GCCATCAACCTTGACTGGCTTGAGCGGCGTAGGCGACACCTTCGGCACGT
GTTTTGGGCCGCTGAGTCGTAACCGAAACCTTGGCGTGCGCTTGGGGAAA
GGAGAACGACTCGAAAATATACTAGGGTCGTCCACCGAAGTGGCGGAAGG
GCATGCAACGGCGTTCTCGTTAGTGCAACTGATCGAAAAGACAAACCGGG
CGTATCGCCGAGAACTGGAGTTTCCGATTATATATGGGGTCAAGGAAATA
TTGGAGGGGAAAAGGACACCCGCGGAGGGGTTGCGGGATCTGATGGCCAT
GCCTGTCAGGGTGGAAATGTGGAATCTATGACTTAAAGACAAGGAAGCAG
GAGGGCTCGGATGTGGTAGACTTTGAAGTCGACTGGGAGGATCATATTAC
ATGGAAGAATAAAGTAGCATCAACAAGTCAGACGCGGTCAATCAGTAACA
TGACGAGAAAGCGCGAGGAGGGCAAAGCAAACGAGCGGCTGCATGCCAAG
TTTTTTGAGAGGGAGGACGATTTTTTTAACCCCTTACAAATTTGTTGCTA
TCGTTCGGATAAAACTACTTTGGTGTAAATGAAAATATCTTATACC back to topprotein sequence of rna6482 >rna6482-protein ID=rna6482-protein|Name=rna6482|organism=Nannochloropsis gaditana|type=polypeptide|length=371bp
MGRRGSCATQAGAQDLSPPRRPRSAGPQGDVSPPRRTRPERLPGTDASSP
RRPRRRSPSVSPFDPSCRSNTTSGEPSRPHQPRPSPSPSRDPGPEGGDIS
PPRRRRRHDSPSPLRRRRRHDTPSPSPTRDGDPPKRGGQGTRDDRGAVAV
AVVSESGKTASTRPKEDGLKTGAEFRAELEAQKDAEAHAWAEGAKDAGVT
GQHAETVVRDRRGRKLEMLSEFLNQEAYKEGKAAKEAKEEYEWGRGKVQK
EKDEDHRRELEDIKNAPFARYESDLKLERARKEEIRADDPMAAYMLQKQR
DALAQEATRSGKVLKPEYKGPPPKPNRFNIRPGYRWDGIDRGNGFEARWF
KRQSELVTKHERDRAWGMSDL back to topmRNA from alignment at CM002468.1:608845..612474+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6482 ID=rna6482|Name=rna6482|organism=Nannochloropsis gaditana|type=mRNA|length=3630bp|location=Sequence derived from alignment at CM002468.1:608845..612474+ (Nannochloropsis gaditana)
cgatgcCACAGGCAcacaagagggaaagaatgcaGCGGAGCACATCATTT
GTGTCCTTCAAAGTTAAGACATGGACTAATGCATGTTGCACAATTTATTA
ATTATGTACATCACCTCATAGTTGTCTCAATCGCGGTGTCATTTCATCCG
ACGCTCGACCAGTGGCAAAAAGGACGGGTGTGCAAAGCTTCGATATACGA
GTAACCCATAAAGTAGGTGATTTGGGATTTACAGGCATGTCAGCACCCGG
TATCAAGTCGAAAGCCGACATTTTAAAACGctacctctcctcctctacca
gcgACGCTAACGGTAAGGcgttggaaagggagagggggagagctaAGAGT
TCCGGGACGTGCTCTCAGCACTTCAACGATAAGACGTCAACATCTTCCCA
ACTTGGTTTCACATGCTAACGACACTCTCGACAGAGgtgatgaagacgaa
gagaaaaCGAAAAAAGAAGGCCGCTGTCCTGACGGGAGGAGTGCGGGTGG
TGGATGCTGACGaatggggggaggcggggcagagggacgGGAGCAACGAC
GAAGGTAGGTTGTGTGAAGCATCCAGAGGAATTGGGAGTCAGGCCTTCAT
GGCAAGGAAAACAAAGATGAGTCGGTGTCATGTGTGGGCTTATGGTACGG
TAGTCCATGCAGCCTCTGCGTGTCctcacccttctcctcgcctacTCACC
TTGACTCCCTCCGGTAGGAGACGGACCGTTGATTGTGGACGACAAGGGCG
ACCAGGTCACGGCCGCTGGCATGGGTAGAAGGGGTTCTTGTGCGACACAG
GCGGGCGCACAGGATCTGTCCCCACCCCGTCGCCCTCGCTCCGCCGGCCC
CCAAGGCgacgtctcccctccccgcaggaCGCGCCCCGAGCGCCTGCCTG
GCACCGACGCCTCGTCCCCCCGGCGACCTCGCCGCCGCAGTCCTTCTGTT
TCCCCATTCGATCCTTCCTGTCGTTCGAACACCACTTCTGGAGagccctc
ccgtcctcacCAACCTCGGcccagcccttccccttccagaGACCCAGGgc
ccgagggcggggacatttcccccccccgccgcagGCGCCGGCATGAcagt
ccctctcctctgcgCCGCAGACGCCGGCAcgacactccctccccttcccc
caccagggACGGCGACCCTCCCAAGCGTGGCGGCCAGGGCACTCGGGACG
ACCGTGGAGCGGTGGCAGTCGCCGTGGTCTCGGAGTCGGGGAAGACCGCA
TCGACGAGgcccaaggaggacgggctcaaGACAGGGGCCGAATTTCGGGC
CGAGCTGGAGGCGCAGAAGGATGCCGAGGCGCACGcctgggcggagggcg
cCAAAGACGCAGGTGTGACCGGCCAACACGCCGAGACGGTGGTCCGTGAT
CGTCGGGGGCGAAAGTTGGAGATGCTCAGCGAGTTTTTGAACCAGGAGGC
gtacaaggaggggaaggcggccaaggaggcgaaggaggagtacgagtggg
ggcgagggaaggtgcagaaggagaaagatgaGGATCATCGGCGGGAGCTG
GAAGACATCAAGAATGCGCCGTTCGCCCGCTATGAAAGCGACCTTAAACT
TGAGCGGGCACGCAAAGAAGAGATTCGGGCGGACGATCCCATGGCGGCGT
ACATGCTTCAGAAGCAACGTGACGCCCTTGCGCAAGAGGCGACAAGAAGT
GGAAAAGTTCTTAAGCCGGAATATAAAGGGCCGCCGCCCAAGCCGAATCG
GTTCAATATCCGTCCTGGGTATCGATGGGACGGCATCGATCGTGGGAATG
GGTTTGAGGCGAGGTGGTTTAAGCGGCAGAGCGAGCTCGTGACCAAACAC
GAGAGGGACCGTGCATGGGGCATGTCGGATTTGTAAAAAGGACAGCGACA
CGAAAACATTAACGTGGACGTCAGACTGTCATTTTCCGCGCGATACCGTA
TTTCTTTTCAACTATCTTTTAGCTGTTTCAGTCACTATGTCCTCGCCCAT
CAGGTCGCAGCCCCTGCTCTCACGTCCTTGTGGACATTTCACGAATTTCG
GTGCAACAGATATACTTACATACCCATGTTATTCGATCCCATGCCGGCAT
GGAAACAATTTTGAGAATTTACCAACTTCCCGACCCTATCTTGCAATGGT
TCAACTGTTGCTGACTGTGGTGTTTCCTTgcgacgatgacgacgacATGA
ATCCGCTTCACAATCCTCCAAGCACCCGTTATATTGTGAGCGGACACAAT
TTGGCTTTTAATGTTTGATTCTTGAGCTTGTAAGGTGGTATCATTCCCAT
TTTACGCGTATTATTCCGTCCAGTTTCCCGCTCCCAGGGTCGACCTCAGG
CTCGTCGctagaaagaaagaaggcgagcAAAAAACACACTGAAGGACAAA
AATGAAGGCTCAACAAAGTGATGGGATCATTCTGTGAAGCTCACAATCGA
CGAGAAGAACGTGCGCTTTTCGTCAAAGTTTGTTTGTGAGGCATACCTTC
GGACAAGAGAAGTGCGTCTGGTTTGGGCCATGCCTAGCTagatttctttc
tccctcgtccactgGCCAAATCAGACCAAGACGACTGGTCACTTTCACAG
CTCACGATCTTTAATTATAGCAACAGTGCCCTTTCCGTTGGTAGCACTGG
TGGATTTGGAATCTCCCCATGAACGGGGCAAATTTCATGAAGCGGGATAA
GGAATGGCACGAAGCCTTGGAGGGTACGTTTATGGGGGCACGTGCTTTAA
TCACCTATTTCCATTAAATTGGGGTTGTGAGTCCGAGAagctcctttctt
tcttggcaGAGCCAATATATGCAGTTTAGAAGGCGAGTATAGCTCTTGTC
ATGCGCCGCTTCGTAATGGAAGGCTTAATATTCACATCCCGCTGGCGTGA
CTCCAGCATCCGAACTCAAACGAGTGTCCAACAAGGATAATACTCCAGAG
TTATCTCATACGCCCATTTTCCCGAAAGCCATGCACGAAATATCCAAGAT
TCTCAACACAGGTCTGGATCGTGAGACGCTCGCTATCCTGGTCAATTTGT
GTGAGGCAGGCGTCAATCCTGAGGCCTTGGCCCTCGGTAGGTAAttgaga
agaggagggtttCGAAGATTGCCggattttttctttctcgcaATGAATGC
CTCCAAATAAGTGATTGAGTCCAAGGATCTCTGGTTCCCCGTACAGTGGT
GCAGGAGCTCCGGGGAGAGGCCGCTCGAAAGAGACAGCAGCTAGGGCAGG
GCAATGGAAGGAGTTGGTCAAGGCCACAAAATCAGTAATTCAAGAAAAAG
AGCTATGGATGGGATAGAATGGTGCCGAGACAGTGGCACTGTTGATGAAA
CGTGCTTATGCTGTGTACAAAAAGAAAGTGTTACCTTGAGTCGCCGGATC
ATAAGAGTTTCTTCATAATTGCCAACAATCGAGATACAAAATCAAATGAA
ATTTGTTAGAGAAGCCATCTCCGGAAATAAGCACGTCGTTAGCTGCAGGC
ATTTAAAAATACTGGGTGTGCTTTGTCAGCTTACaaacaagggaaggagc
ctcGCCAGATCCGTCTCTCTATGTTTCCATGCTATTCCCGCTGCTTTTCT
TCGTACGGGTGCTTAACAAGCCTGTCGCCC back to topCoding sequence (CDS) from alignment at CM002468.1:608845..612474+ >rna6482 ID=rna6482|Name=rna6482|organism=Nannochloropsis gaditana|type=CDS|length=1116bp|location=Sequence derived from alignment at CM002468.1:608845..612474+ (Nannochloropsis gaditana)
ATGGGTAGAAGGGGTTCTTGTGCGACACAGGCGGGCGCACAGGATCTGTC
CCCACCCCGTCGCCCTCGCTCCGCCGGCCCCCAAGGCgacgtctcccctc
cccgcaggaCGCGCCCCGAGCGCCTGCCTGGCACCGACGCCTCGTCCCCC
CGGCGACCTCGCCGCCGCAGTCCTTCTGTTTCCCCATTCGATCCTTCCTG
TCGTTCGAACACCACTTCTGGAGagccctcccgtcctcacCAACCTCGGc
ccagcccttccccttccagaGACCCAGGgcccgagggcggggacatttcc
cccccccgccgcagGCGCCGGCATGAcagtccctctcctctgcgCCGCAG
ACGCCGGCAcgacactccctccccttcccccaccagggACGGCGACCCTC
CCAAGCGTGGCGGCCAGGGCACTCGGGACGACCGTGGAGCGGTGGCAGTC
GCCGTGGTCTCGGAGTCGGGGAAGACCGCATCGACGAGgcccaaggagga
cgggctcaaGACAGGGGCCGAATTTCGGGCCGAGCTGGAGGCGCAGAAGG
ATGCCGAGGCGCACGcctgggcggagggcgcCAAAGACGCAGGTGTGACC
GGCCAACACGCCGAGACGGTGGTCCGTGATCGTCGGGGGCGAAAGTTGGA
GATGCTCAGCGAGTTTTTGAACCAGGAGGCgtacaaggaggggaaggcgg
ccaaggaggcgaaggaggagtacgagtgggggcgagggaaggtgcagaag
gagaaagatgaGGATCATCGGCGGGAGCTGGAAGACATCAAGAATGCGCC
GTTCGCCCGCTATGAAAGCGACCTTAAACTTGAGCGGGCACGCAAAGAAG
AGATTCGGGCGGACGATCCCATGGCGGCGTACATGCTTCAGAAGCAACGT
GACGCCCTTGCGCAAGAGGCGACAAGAAGTGGAAAAGTTCTTAAGCCGGA
ATATAAAGGGCCGCCGCCCAAGCCGAATCGGTTCAATATCCGTCCTGGGT
ATCGATGGGACGGCATCGATCGTGGGAATGGGTTTGAGGCGAGGTGGTTT
AAGCGGCAGAGCGAGCTCGTGACCAAACACGAGAGGGACCGTGCATGGGG
CATGTCGGATTTGTAA back to top
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