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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100217g7.6975.mrna |
| Orig protein id | gnl|cribi|Naga_100217g7.6975 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:602364..605674 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6480 ID=rna6480|Name=rna6480|organism=Nannochloropsis gaditana|type=mRNA|length=2838bp
CCCTTTAACAGCCATGGTGGACATGTTGGACACGGCTCCCACGCTAGTCG
CAACATCACACAGTCATGTTGCGGGATGCTCAAAACAGATTTCTGGTTTC
AAGCCTGTTGTTGCGCTAAGTCCTGCGTCCTCGAAAGCCGCTGCACCCTC
CTCCGGCGGGGTGTCTAGACGCGCTGTGTTGGTAATGGATGGTCCACACT
TGCACAAAGCGCTCGACGCTTATTTTCCAGGATTAACCCAAGACGAACTA
CCTGTTGTCGTGCAGGGGCTGATGGCTTCCTTGGAAAGCGAGTTTCGCGT
CACTTTTAGCAAAAGCATCTTCCATGACTGCAGTACAGCACTGGGCCAGC
CTACCGCATTGGGACGTCTCTTGGCGGCACCCCCAATCGCGGCTCGTATC
CGCATGCATGCTGTGAAAGCAGTGGCAGGCGCCGCCGTTGACCCGCACAC
GTGGGAACCAGTCCGCCAAAGCAGCACGAGTAGCCTCTACAGCAGTAATA
GTGGAAGCAGCAGCAGTATTGCATCGCTGTACGGGGGCGGAGAGAACATG
CAGGGCGGTGAAAAGACCACCCTTTTGATCGAAAGCGGACTGGATGTCTC
CATGAGCCTGGATTTGCTCCGCCACGCTTCCGGCGCGCCCGCTGCCGGTC
CACAGGATAGCTCTCAACCCACGGTGCTAGTAGTTCTAAGTGCACGACCC
GAGCTTTCGGAGACTTTGGACGTGATAGCGGGTAGGAGTGGATCGGTCTT
TGTGATCGGTCTCCAGAAAGAATTGTACGGCACACCGCTCTCGCAATTCG
TGACGGGGGGAATCACGCTGGACGGGCTCCTTGTCAGCGCAGCCGAAGCC
CTTTTGTGGCACCGTCGTCGGTGCAGGCAGCATTTACAGCAGCGCCAACT
TCAGCAGCAACAGCGACGGCAAAGCTTATCTCCCCGGGCGGATTTCTGTC
CCCATGGGCCGGCTTGTGACTACCTTCGCGGCACTGCGGCTTACATGTCA
GGAGGCGCGAGCAAATATAACCCCTTGGATGGTACTATCAGAACCTGTGC
ACACTGGAAGGAAGTGAACCAGTCCCACCGCTCCTCTCCAGCTGGGGGGA
GCGGGGGAGGAAGCGGGCAGACGAGCCCTCGCCCCTTCTCGAAGAGTAAA
CTTGACCATCTCACTGCCTTCCAGCACACATGTGGTGCAGGCAGGACGTG
TCGCAATGGCGGTCCTTACCATCAAATGGCATTTCCTCATGTCAGCTCCA
TCACAAGCAGCTGCAGCAGCAGTAGCTGTGGTCATAGCAAGGGCATGGGT
GTCAACCACGGCAACTTCCGGGAAGCATGCACTAAAAGAGAGAGTCCCGC
CGAGCGACAGGCCTCGTATACCAGTCACGATGAATGTGATAGACGTCACG
TTTGCAACCACTCCAGCGAGCGCGGCAATCGTGGCGACTTCACGGGTCAG
GTCGGGGGCGGTCCATTCCGTCCAGCCATGGCCTCTGCCGCCCCTTGTGA
CCGCTCGGCAGCCATTACATCGGTGACGGAGCTCCCTGAAGGGAGGGGGA
AAGGAGCGACGCGCGAAGACGACGGATGGCTTGAGGAGGCAGTCCGGAAG
GACTTTTACGGGGAAGAGGGAGAGGCGTCGCAGGTGACAGCTGACGAGGA
GGAGGACGAGGAGACAGCGGCGGTGGTGGGACTGCGGGGATGTCTTCCCT
CGGTCTCGAAGAGGTCCTCAAATTGGGGCCGAGCGAAGCAGGGCGAGATT
GGGAAGCCCGTCTGGTGGCAGCGGCTGCGGAGGAGTCACAAGGACGATGA
AGAGGAGGATGGCGGTGAAGACGGTGGCGGGCGTTTGGAGGAGATGGCCG
AACTGGAACCAGGCCGTGACCACCGCGGAGAAGGTGACGAAGAGAGAGAT
GCAGTCCTGTTCCCAATGTCCTTATAAGCGCAGAGGAAGTCACGCGAGAT
ATATTCCGTGAGAAATTCGTACGAGTAGTTCCAATCGTGACGTGCGCTGT
AGTAGCCCACTCACAGGGGAAGAGTAAGGTCGGTGGAAGTGTAGGCAAGG
TTTGTATACGATCAAGGGCAACGATTATGCCGGAATGCTGGCGCGAATTA
TTTGCGAGGCAAAGCCGGAGGACCGAGTAAATATAGATAGGATAGGCGAC
GTGCACGAGAGGGACTTTTAAGGGGATCCCTCCTGCATTGAGAGACGCAT
CGCATATAGTGGCCTTTTTCACTTTTTGATCACACTCGTGCGCGCACATA
TTCGGGAAAAAGTGTCCTTTGTCTGACTGGCCTTTGCATCAGAAAGGGAG
TAAGTAAGGGAGACAGTGAGACGAGAGAGGTGAATGGCGCCGGTTGGGTT
ATGAAATGCAGCGTTGGATGCGATTCATTGTAGCGAGCATGCTGAAGGCG
AGCAAGGGAATCTTTCAATCGAGCGAAATAAAACATTTGTTGAATTGAGC
GCATTCATGTGAGTTGTAGGCTTGTGAAATTGTAGGAGATTGTAGTGTAG
GCTAGAGGCAGAGCAATAGCTGAGTGTGGTTTTGGGTCGTCACTCTTTGT
ACCTCCCCCGGTGCTCCACCTCATCGAAAGAGGCGTTCAGTGCATGGGAA
GCTGATTCGTATAGAAGTGCATTTTGGCTTGGAAGGCAGGTTTGATTTGC
ATGGGTGTATGAATTTGGTGGGTGGGGAAGGGTGTGTCGGAGGGGACCGA
GGTCACAAGCAATGTGTAATGGGTGGAGTATAATGAACGGGAACAGTAAT
AGTAGATGGATTGGCTTCGGGTAATCCTGGGAATAGAGGGACGCTTCGGA
GAGGCGATCAATGAAGATGTGTACACACGCCCCCCACA back to topprotein sequence of rna6480 >rna6480-protein ID=rna6480-protein|Name=rna6480|organism=Nannochloropsis gaditana|type=polypeptide|length=622bp
MYPPPPRRTLFGQALFQPLDDKRSISRSIRRDIVVHTCIVRCSTCISYPL
VCDGITWTHAAFQIHLPHPLPSPSQSRLTRFIPHYSIFHDCSTALGQPTA
LGRLLAAPPIAARIRMHAVKAVAGAAVDPHTWEPVRQSSTSSLYSSNSGS
SSSIASLYGGGENMQGGEKTTLLIESGLDVSMSLDLLRHASGAPAAGPQD
SSQPTVLVVLSARPELSETLDVIAGRSGSVFVIGLQKELYGTPLSQFVTG
GITLDGLLVSAAEALLWHRRRCRQHLQQRQLQQQQRRQSLSPRADFCPHG
PACDYLRGTAAYMSGGASKYNPLDGTIRTCAHWKEVNQSHRSSPAGGSGG
GSGQTSPRPFSKSKLDHLTAFQHTCGAGRTCRNGGPYHQMAFPHVSSITS
SCSSSSCGHSKGMGVNHGNFREACTKRESPAERQASYTSHDECDRRHVCN
HSSERGNRGDFTGQVGGGPFRPAMASAAPCDRSAAITSVTELPEGRGKGA
TREDDGWLEEAVRKDFYGEEGEASQVTADEEEDEETAAVVGLRGCLPSVS
KRSSNWGRAKQGEIGKPVWWQRLRRSHKDDEEEDGGEDGGGRLEEMAELE
PGRDHRGEGDEERDAVLFPMSL back to topmRNA from alignment at CM002468.1:602364..605674- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna6480 ID=rna6480|Name=rna6480|organism=Nannochloropsis gaditana|type=mRNA|length=3311bp|location=Sequence derived from alignment at CM002468.1:602364..605674- (Nannochloropsis gaditana)
CCCTTTAACAGCCATGGTGGACATGTTGGACACGGCTCCCACGCTAGTCG
CAACATCACACAGTCATGTTGCGGGATGCTCAAAACAGATTTCTGGTTTC
AAGCCTGTTGTTGCGCTAAGTCCTGCGTCCTCGAAAGCCGCTGCACCCTC
CTCCGGCGGGGTGTCTAGACGCGCTGTGTTGGTAATGGATGGTCCACACT
TGCACAAAGCGCTCGACGCTTATTTTCCAGGATTAACCCAAGACGAACTA
CCTGTTGTCGTGCAGGGGCTGATGGCTTCCTTGGAAAGCGAGTTTCGCGT
CACTTTTAGCAAAAGGTGCGTTTTGGTGGACGGGCACATAAGAATCTGAC
ATTCGGACAGCCCCCGGCCTCCCAAAAAATCGGAGGGGTCCCTTTGTTAA
AGATGTTTCCATATCATATCCCAAATAAATGCATGATCGTGTCCTAGCAT
GTTTTTGATTGACATTTTAAGCGGGAGCAGAGGCTGAAATGATATTGGTG
GTGAATTTCGTGTAGTCATGTCCGTCAACGTATGTACCCCCCCCCCCCCC
GGCGGACCCTGTTCGGACAAGCGCTTTTCCAGCCACTTGATGATAAGCGC
TCTATATCCAGAAGTATAAGACGTGATATAGTAGTACATACTTGTATTGT
GAGATGCTCAACCTGTATTTCATACCCCTTGGTTTGCGATGGCATTACCT
GGACCCATGCAGCCTTCCAGATTCATCTCCCCCATCCCCTACCTTCCCCT
TCTCAGTCACGCCTCACCCGCTTTATCCCACACTACAGCATCTTCCATGA
CTGCAGTACAGCACTGGGCCAGCCTACCGCATTGGGACGTCTCTTGGCGG
CACCCCCAATCGCGGCTCGTATCCGCATGCATGCTGTGAAAGCAGTGGCA
GGCGCCGCCGTTGACCCGCACACGTGGGAACCAGTCCGCCAAAGCAGCAC
GAGTAGCCTCTACAGCAGTAATAGTGGAAGCAGCAGCAGTATTGCATCGC
TGTACGGGGGCGGAGAGAACATGCAGGGCGGTGAAAAGACCACCCTTTTG
ATCGAAAGCGGACTGGATGTCTCCATGAGCCTGGATTTGCTCCGCCACGC
TTCCGGCGCGCCCGCTGCCGGTCCACAGGATAGCTCTCAACCCACGGTGC
TAGTAGTTCTAAGTGCACGACCCGAGCTTTCGGAGACTTTGGACGTGATA
GCGGGTAGGAGTGGATCGGTCTTTGTGATCGGTCTCCAGAAAGAATTGTA
CGGCACACCGCTCTCGCAATTCGTGACGGGGGGAATCACGCTGGACGGGC
TCCTTGTCAGCGCAGCCGAAGCCCTTTTGTGGCACCGTCGTCGGTGCAGG
CAGCATTTACAGCAGCGCCAACTTCAGCAGCAACAGCGACGGCAAAGCTT
ATCTCCCCGGGCGGATTTCTGTCCCCATGGGCCGGCTTGTGACTACCTTC
GCGGCACTGCGGCTTACATGTCAGGAGGCGCGAGCAAATATAACCCCTTG
GATGGTACTATCAGAACCTGTGCACACTGGAAGGAAGTGAACCAGTCCCA
CCGCTCCTCTCCAGCTGGGGGGAGCGGGGGAGGAAGCGGGCAGACGAGCC
CTCGCCCCTTCTCGAAGAGTAAACTTGACCATCTCACTGCCTTCCAGCAC
ACATGTGGTGCAGGCAGGACGTGTCGCAATGGCGGTCCTTACCATCAAAT
GGCATTTCCTCATGTCAGCTCCATCACAAGCAGCTGCAGCAGCAGTAGCT
GTGGTCATAGCAAGGGCATGGGTGTCAACCACGGCAACTTCCGGGAAGCA
TGCACTAAAAGAGAGAGTCCCGCCGAGCGACAGGCCTCGTATACCAGTCA
CGATGAATGTGATAGACGTCACGTTTGCAACCACTCCAGCGAGCGCGGCA
ATCGTGGCGACTTCACGGGTCAGGTCGGGGGCGGTCCATTCCGTCCAGCC
ATGGCCTCTGCCGCCCCTTGTGACCGCTCGGCAGCCATTACATCGGTGAC
GGAGCTCCCTGAAGGGAGGGGGAAAGGAGCGACGCGCGAAGACGACGGAT
GGCTTGAGGAGGCAGTCCGGAAGGACTTTTACGGGGAAGAGGGAGAGGCG
TCGCAGGTGACAGCTGACGAGGAGGAGGACGAGGAGACAGCGGCGGTGGT
GGGACTGCGGGGATGTCTTCCCTCGGTCTCGAAGAGGTCCTCAAATTGGG
GCCGAGCGAAGCAGGGCGAGATTGGGAAGCCCGTCTGGTGGCAGCGGCTG
CGGAGGAGTCACAAGGACGATGAAGAGGAGGATGGCGGTGAAGACGGTGG
CGGGCGTTTGGAGGAGATGGCCGAACTGGAACCAGGCCGTGACCACCGCG
GAGAAGGTGACGAAGAGAGAGATGCAGTCCTGTTCCCAATGTCCTTATAA
GCGCAGAGGAAGTCACGCGAGATATATTCCGTGAGAAATTCGTACGAGTA
GTTCCAATCGTGACGTGCGCTGTAGTAGCCCACTCACAGGGGAAGAGTAA
GGTCGGTGGAAGTGTAGGCAAGGTTTGTATACGATCAAGGGCAACGATTA
TGCCGGAATGCTGGCGCGAATTATTTGCGAGGCAAAGCCGGAGGACCGAG
TAAATATAGATAGGATAGGCGACGTGCACGAGAGGGACTTTTAAGGGGAT
CCCTCCTGCATTGAGAGACGCATCGCATATAGTGGCCTTTTTCACTTTTT
GATCACACTCGTGCGCGCACATATTCGGGAAAAAGTGTCCTTTGTCTGAC
TGGCCTTTGCATCAGAAAGGGAGTAAGTAAGGGAGACAGTGAGACGAGAG
AGGTGAATGGCGCCGGTTGGGTTATGAAATGCAGCGTTGGATGCGATTCA
TTGTAGCGAGCATGCTGAAGGCGAGCAAGGGAATCTTTCAATCGAGCGAA
ATAAAACATTTGTTGAATTGAGCGCATTCATGTGAGTTGTAGGCTTGTGA
AATTGTAGGAGATTGTAGTGTAGGCTAGAGGCAGAGCAATAGCTGAGTGT
GGTTTTGGGTCGTCACTCTTTGTACCTCCCCCGGTGCTCCACCTCATCGA
AAGAGGCGTTCAGTGCATGGGAAGCTGATTCGTATAGAAGTGCATTTTGG
CTTGGAAGGCAGGTTTGATTTGCATGGGTGTATGAATTTGGTGGGTGGGG
AAGGGTGTGTCGGAGGGGACCGAGGTCACAAGCAATGTGTAATGGGTGGA
GTATAATGAACGGGAACAGTAATAGTAGATGGATTGGCTTCGGGTAATCC
TGGGAATAGAGGGACGCTTCGGAGAGGCGATCAATGAAGATGTGTACACA
CGCCCCCCACA back to topCoding sequence (CDS) from alignment at CM002468.1:602364..605674- >rna6480 ID=rna6480|Name=rna6480|organism=Nannochloropsis gaditana|type=CDS|length=1869bp|location=Sequence derived from alignment at CM002468.1:602364..605674- (Nannochloropsis gaditana)
ATGTACCCCCCCCCCCCCCGGCGGACCCTGTTCGGACAAGCGCTTTTCCA
GCCACTTGATGATAAGCGCTCTATATCCAGAAGTATAAGACGTGATATAG
TAGTACATACTTGTATTGTGAGATGCTCAACCTGTATTTCATACCCCTTG
GTTTGCGATGGCATTACCTGGACCCATGCAGCCTTCCAGATTCATCTCCC
CCATCCCCTACCTTCCCCTTCTCAGTCACGCCTCACCCGCTTTATCCCAC
ACTACAGCATCTTCCATGACTGCAGTACAGCACTGGGCCAGCCTACCGCA
TTGGGACGTCTCTTGGCGGCACCCCCAATCGCGGCTCGTATCCGCATGCA
TGCTGTGAAAGCAGTGGCAGGCGCCGCCGTTGACCCGCACACGTGGGAAC
CAGTCCGCCAAAGCAGCACGAGTAGCCTCTACAGCAGTAATAGTGGAAGC
AGCAGCAGTATTGCATCGCTGTACGGGGGCGGAGAGAACATGCAGGGCGG
TGAAAAGACCACCCTTTTGATCGAAAGCGGACTGGATGTCTCCATGAGCC
TGGATTTGCTCCGCCACGCTTCCGGCGCGCCCGCTGCCGGTCCACAGGAT
AGCTCTCAACCCACGGTGCTAGTAGTTCTAAGTGCACGACCCGAGCTTTC
GGAGACTTTGGACGTGATAGCGGGTAGGAGTGGATCGGTCTTTGTGATCG
GTCTCCAGAAAGAATTGTACGGCACACCGCTCTCGCAATTCGTGACGGGG
GGAATCACGCTGGACGGGCTCCTTGTCAGCGCAGCCGAAGCCCTTTTGTG
GCACCGTCGTCGGTGCAGGCAGCATTTACAGCAGCGCCAACTTCAGCAGC
AACAGCGACGGCAAAGCTTATCTCCCCGGGCGGATTTCTGTCCCCATGGG
CCGGCTTGTGACTACCTTCGCGGCACTGCGGCTTACATGTCAGGAGGCGC
GAGCAAATATAACCCCTTGGATGGTACTATCAGAACCTGTGCACACTGGA
AGGAAGTGAACCAGTCCCACCGCTCCTCTCCAGCTGGGGGGAGCGGGGGA
GGAAGCGGGCAGACGAGCCCTCGCCCCTTCTCGAAGAGTAAACTTGACCA
TCTCACTGCCTTCCAGCACACATGTGGTGCAGGCAGGACGTGTCGCAATG
GCGGTCCTTACCATCAAATGGCATTTCCTCATGTCAGCTCCATCACAAGC
AGCTGCAGCAGCAGTAGCTGTGGTCATAGCAAGGGCATGGGTGTCAACCA
CGGCAACTTCCGGGAAGCATGCACTAAAAGAGAGAGTCCCGCCGAGCGAC
AGGCCTCGTATACCAGTCACGATGAATGTGATAGACGTCACGTTTGCAAC
CACTCCAGCGAGCGCGGCAATCGTGGCGACTTCACGGGTCAGGTCGGGGG
CGGTCCATTCCGTCCAGCCATGGCCTCTGCCGCCCCTTGTGACCGCTCGG
CAGCCATTACATCGGTGACGGAGCTCCCTGAAGGGAGGGGGAAAGGAGCG
ACGCGCGAAGACGACGGATGGCTTGAGGAGGCAGTCCGGAAGGACTTTTA
CGGGGAAGAGGGAGAGGCGTCGCAGGTGACAGCTGACGAGGAGGAGGACG
AGGAGACAGCGGCGGTGGTGGGACTGCGGGGATGTCTTCCCTCGGTCTCG
AAGAGGTCCTCAAATTGGGGCCGAGCGAAGCAGGGCGAGATTGGGAAGCC
CGTCTGGTGGCAGCGGCTGCGGAGGAGTCACAAGGACGATGAAGAGGAGG
ATGGCGGTGAAGACGGTGGCGGGCGTTTGGAGGAGATGGCCGAACTGGAA
CCAGGCCGTGACCACCGCGGAGAAGGTGACGAAGAGAGAGATGCAGTCCT
GTTCCCAATGTCCTTATAA back to top
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