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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100217g7.6974.mrna |
| Orig protein id | gnl|cribi|Naga_100217g7.6974 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:602364..605674 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6479 ID=rna6479|Name=rna6479|organism=Nannochloropsis gaditana|type=mRNA|length=1845bp
GTAAGCTTCGTGTCTTCCTATTAATCAATTTTTCTTGACAGAATTGGCGC
CCGCTCCAAAATATTGCTACCATTGCGTGCAAAAAACCTTATTTTTTGAA
TTATGTACATCCTGAATTGTGAAGTGGTTGCTGCTTTGCGTGTATTCGCA
GTAGAAAGACTTCTATCATCATCTTGTACACGTCCCCTTTCTTACGCTCC
GCTCGCCTCTTCGAAGACAAAGCACTTTTGACGACAAAACCACCCTTCTC
TTGTCCAGCCCTATCAGAAACATTCGTACGAGGCGGCTCTCTCCGCATCC
GGAGCCTAGGGTGACAAAGCGTCGCGAGTGCAAGTTGGCACTTGTTTATG
ACTGATTGTCGCACGTCCACCTCGAACCGGTTACCCTGTGAAGCTTTTTT
AGACCATGGTGGCCCCTGTCCTTGTCGCCTACGAATTTATCGGGCCCGCG
GATGCACCTGAGACGGGTTTCTCGTCCTCGTTCGAGCTCTTTGCTTCGGA
TTCCCCAACTGACGTGCTTACAGTGCTCGCCCTGCGCGAGGCCTTCCCCT
ACGTGGGTGACTTCCATTTTCGAGCAAAGATTCCTTTCCAAGAGACGCAG
TACGCCTGGCTGGATCTGACGGAGGAGGATACACCCTTGCCTCTCTTGAC
TGAAGAGAGCGATCAGCCAGTCGTGGCGATCCGGGTCCTTCCCCTGGCCT
TCGAGGACGAGGACGAGGACCGGCAGGGGAAGAATGGAGGAGAGCTGGAT
TTCAGTGGGCCAGATTTGGATCAAGATATTGTGGAAAGTTGTGTCCTCGG
GGAAGGCGGCGGCAGCCGTGGAGGGGGCGGAGACGCTCTGGGAGTGGGAG
GGGGGCGCGACGCCTCGTTCTCCTCTCCAGGGGGGAGTTATGGCAACTGG
GCCCATCAGCTGAAGGGCGTAGGCGAGTCGGTGATAACCTCGGACGTGGC
CCGGGACCTGACCAAGAAGGGGCTGAAGGTGGGAAAGCAGGTGGGAAAGC
AGGTGAACAAGCTCTGGCGACTGGTGGGCGAGGGCCTCGGGGGTGGTGAG
AGGGGGGAAGGAGGGGCGGGGGACAGAAGGGAGGGGCGCTCGTTGGTGCC
TGAAGGCCCGAGCCCGTCGAGCGTCCGCTATTTGCGCAGGTGGGAAGATG
CGTTGGTCACGCCCCCCGACGCAGAGACCCTGCTCGCACTCTGGAAGGCG
CTTTTCCCGGGGGCGGCCTCGCGAGATGAGGGGGCCCGAGCACGGTCCCG
GCAGTGGCGGAGAGCGGGATGCGAGGAAGAGGACCCCTTGCGAGAGTTCA
GAGGGACGGGAAGTATGTGTGTACGGTGCCTGACATATTTCGCACGGACG
TACCCGGAGAAGACGCAGGACATCCTAGAACGGTACGAGGCTGGAAAAAA
GGAGGGGTGTGGAAATCAGGAGATGTATCCATTAATTGGCGTCTCGAACA
GCCTAATTTTGATTATGGTAGACATCTTTAAGCTGCGGGACGCTCGTTAC
GTACACGTGCAGTCGACGATGTGGAACCTTTTCGAAGGGGGGGGGTATGG
CACCATGGAGGAGGTCTTTTCTGCGGCCCTGGCATACCTGGATCGCAGGT
GGATGGAAACGGAGGCGTCTATCGAAGGTTTCTCGACTTTAGCCCGTGAG
ACAAGGCGGGCGCTGGAGGGGGTTTTGGGGCAGGGACCGTTGAATCTGCC
GCATTTCCAGGCACTGGCGCAGGACGCGGGGTTGGGGTGGAGGTGACGAC
ACGTAGGAATTGAGACGAGCGAAAAAATGGAAAAATATGTGAATTAAATC
GAGCGGTCTATCTTTAAAGAAATACACAAGGCGCAGCCTCTAGGG back to topprotein sequence of rna6479 >rna6479-protein ID=rna6479-protein|Name=rna6479|organism=Nannochloropsis gaditana|type=polypeptide|length=637bp
MVDMLDTAPTLVATSHSHVAGCSKQISGFKPVVALSPASSKAAAPSSGGV
SRRAVLVMDGPHLHKALDAYFPGLTQDELPVVVQGLMASLESEFRVTFSK
SIFHDCSTALGQPTALGRLLAAPPIAARIRMHAVKAVAGAAVDPHTWEPV
RQSSTSSLYSSNSGSSSSIASLYGGGENMQGGEKTTLLIESGLDVSMSLD
LLRHASGAPAAGPQDSSQPTVLVVLSARPELSETLDVIAGRSGSVFVIGL
QKELYGTPLSQFVTGGITLDGLLVSAAEALLWHRRRCRQHLQQRQLQQQQ
RRQSLSPRADFCPHGPACDYLRGTAAYMSGGASKYNPLDGTIRTCAHWKE
VNQSHRSSPAGGSGGGSGQTSPRPFSKSKLDHLTAFQHTCGAGRTCRNGG
PYHQMAFPHVSSITSSCSSSSCGHSKGMGVNHGNFREACTKRESPAERQA
SYTSHDECDRRHVCNHSSERGNRGDFTGQVGGGPFRPAMASAAPCDRSAA
ITSVTELPEGRGKGATREDDGWLEEAVRKDFYGEEGEASQVTADEEEDEE
TAAVVGLRGCLPSVSKRSSNWGRAKQGEIGKPVWWQRLRRSHKDDEEEDG
GEDGGGRLEEMAELEPGRDHRGEGDEERDAVLFPMSL back to topmRNA from alignment at CM002468.1:602364..605674- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6479 ID=rna6479|Name=rna6479|organism=Nannochloropsis gaditana|type=mRNA|length=3311bp|location=Sequence derived from alignment at CM002468.1:602364..605674- (Nannochloropsis gaditana)
CCCTTTAACAGCCATGGTGGACATGTTGGACACGGCTCCCACGCTAGTCG
CAACATCACACAGTCATGTTGCGGGATGCTCAAAACAGATTTCTGGTTTC
AAGCCTGTTGTTGCGCTAAGTCCTGCGTCCTCGAAAGCCGCTGCACCCTC
CTCCGGCGGGGTGTCTAGACGCGCTGTGTTGGTAATGGATGGTCCACACT
TGCACAAAGCGCTCGACGCTTATTTTCCAGGATTAACCCAAGACGAACTA
CCTGTTGTCGTGCAGGGGCTGATGGCTTCCTTGGAAAGCGAGTTTCGCGT
CACTTTTAGCAAAAGGTGCGTTTTGGTGGACGGGCACATAAGAATCTGAC
ATTCGGACAGCCCCCGGCCTCCCAAAAAATCGGAGGGGTCCCTTTGTTAA
AGATGTTTCCATATCATATCCCAAATAAATGCATGATCGTGTCCTAGCAT
GTTTTTGATTGACATTTTAAGCGGGAGCAGAGGCTGAAATGATATTGGTG
GTGAATTTCGTGTAGTCATGTCCGTCAACGTATGTACCCCCCCCCCCCCC
GGCGGACCCTGTTCGGACAAGCGCTTTTCCAGCCACTTGATGATAAGCGC
TCTATATCCAGAAGTATAAGACGTGATATAGTAGTACATACTTGTATTGT
GAGATGCTCAACCTGTATTTCATACCCCTTGGTTTGCGATGGCATTACCT
GGACCCATGCAGCCTTCCAGATTCATCTCCCCCATCCCCTACCTTCCCCT
TCTCAGTCACGCCTCACCCGCTTTATCCCACACTACAGCATCTTCCATGA
CTGCAGTACAGCACTGGGCCAGCCTACCGCATTGGGACGTCTCTTGGCGG
CACCCCCAATCGCGGCTCGTATCCGCATGCATGCTGTGAAAGCAGTGGCA
GGCGCCGCCGTTGACCCGCACACGTGGGAACCAGTCCGCCAAAGCAGCAC
GAGTAGCCTCTACAGCAGTAATAGTGGAAGCAGCAGCAGTATTGCATCGC
TGTACGGGGGCGGAGAGAACATGCAGGGCGGTGAAAAGACCACCCTTTTG
ATCGAAAGCGGACTGGATGTCTCCATGAGCCTGGATTTGCTCCGCCACGC
TTCCGGCGCGCCCGCTGCCGGTCCACAGGATAGCTCTCAACCCACGGTGC
TAGTAGTTCTAAGTGCACGACCCGAGCTTTCGGAGACTTTGGACGTGATA
GCGGGTAGGAGTGGATCGGTCTTTGTGATCGGTCTCCAGAAAGAATTGTA
CGGCACACCGCTCTCGCAATTCGTGACGGGGGGAATCACGCTGGACGGGC
TCCTTGTCAGCGCAGCCGAAGCCCTTTTGTGGCACCGTCGTCGGTGCAGG
CAGCATTTACAGCAGCGCCAACTTCAGCAGCAACAGCGACGGCAAAGCTT
ATCTCCCCGGGCGGATTTCTGTCCCCATGGGCCGGCTTGTGACTACCTTC
GCGGCACTGCGGCTTACATGTCAGGAGGCGCGAGCAAATATAACCCCTTG
GATGGTACTATCAGAACCTGTGCACACTGGAAGGAAGTGAACCAGTCCCA
CCGCTCCTCTCCAGCTGGGGGGAGCGGGGGAGGAAGCGGGCAGACGAGCC
CTCGCCCCTTCTCGAAGAGTAAACTTGACCATCTCACTGCCTTCCAGCAC
ACATGTGGTGCAGGCAGGACGTGTCGCAATGGCGGTCCTTACCATCAAAT
GGCATTTCCTCATGTCAGCTCCATCACAAGCAGCTGCAGCAGCAGTAGCT
GTGGTCATAGCAAGGGCATGGGTGTCAACCACGGCAACTTCCGGGAAGCA
TGCACTAAAAGAGAGAGTCCCGCCGAGCGACAGGCCTCGTATACCAGTCA
CGATGAATGTGATAGACGTCACGTTTGCAACCACTCCAGCGAGCGCGGCA
ATCGTGGCGACTTCACGGGTCAGGTCGGGGGCGGTCCATTCCGTCCAGCC
ATGGCCTCTGCCGCCCCTTGTGACCGCTCGGCAGCCATTACATCGGTGAC
GGAGCTCCCTGAAGGGAGGGGGAAAGGAGCGACGCGCGAAGACGACGGAT
GGCTTGAGGAGGCAGTCCGGAAGGACTTTTACGGGGAAGAGGGAGAGGCG
TCGCAGGTGACAGCTGACGAGGAGGAGGACGAGGAGACAGCGGCGGTGGT
GGGACTGCGGGGATGTCTTCCCTCGGTCTCGAAGAGGTCCTCAAATTGGG
GCCGAGCGAAGCAGGGCGAGATTGGGAAGCCCGTCTGGTGGCAGCGGCTG
CGGAGGAGTCACAAGGACGATGAAGAGGAGGATGGCGGTGAAGACGGTGG
CGGGCGTTTGGAGGAGATGGCCGAACTGGAACCAGGCCGTGACCACCGCG
GAGAAGGTGACGAAGAGAGAGATGCAGTCCTGTTCCCAATGTCCTTATAA
GCGCAGAGGAAGTCACGCGAGATATATTCCGTGAGAAATTCGTACGAGTA
GTTCCAATCGTGACGTGCGCTGTAGTAGCCCACTCACAGGGGAAGAGTAA
GGTCGGTGGAAGTGTAGGCAAGGTTTGTATACGATCAAGGGCAACGATTA
TGCCGGAATGCTGGCGCGAATTATTTGCGAGGCAAAGCCGGAGGACCGAG
TAAATATAGATAGGATAGGCGACGTGCACGAGAGGGACTTTTAAGGGGAT
CCCTCCTGCATTGAGAGACGCATCGCATATAGTGGCCTTTTTCACTTTTT
GATCACACTCGTGCGCGCACATATTCGGGAAAAAGTGTCCTTTGTCTGAC
TGGCCTTTGCATCAGAAAGGGAGTAAGTAAGGGAGACAGTGAGACGAGAG
AGGTGAATGGCGCCGGTTGGGTTATGAAATGCAGCGTTGGATGCGATTCA
TTGTAGCGAGCATGCTGAAGGCGAGCAAGGGAATCTTTCAATCGAGCGAA
ATAAAACATTTGTTGAATTGAGCGCATTCATGTGAGTTGTAGGCTTGTGA
AATTGTAGGAGATTGTAGTGTAGGCTAGAGGCAGAGCAATAGCTGAGTGT
GGTTTTGGGTCGTCACTCTTTGTACCTCCCCCGGTGCTCCACCTCATCGA
AAGAGGCGTTCAGTGCATGGGAAGCTGATTCGTATAGAAGTGCATTTTGG
CTTGGAAGGCAGGTTTGATTTGCATGGGTGTATGAATTTGGTGGGTGGGG
AAGGGTGTGTCGGAGGGGACCGAGGTCACAAGCAATGTGTAATGGGTGGA
GTATAATGAACGGGAACAGTAATAGTAGATGGATTGGCTTCGGGTAATCC
TGGGAATAGAGGGACGCTTCGGAGAGGCGATCAATGAAGATGTGTACACA
CGCCCCCCACA back to topCoding sequence (CDS) from alignment at CM002468.1:602364..605674- >rna6479 ID=rna6479|Name=rna6479|organism=Nannochloropsis gaditana|type=CDS|length=3828bp|location=Sequence derived from alignment at CM002468.1:602364..605674- (Nannochloropsis gaditana)
CATCTTCCATGACTGCAGTACAGCACTGGGCCAGCCTACCGCATTGGGAC
GTCTCTTGGCGGCACCCCCAATCGCGGCTCGTATCCGCATGCATGCTGTG
AAAGCAGTGGCAGGCGCCGCCGTTGACCCGCACACGTGGGAACCAGTCCG
CCAAAGCAGCACGAGTAGCCTCTACAGCAGTAATAGTGGAAGCAGCAGCA
GTATTGCATCGCTGTACGGGGGCGGAGAGAACATGCAGGGCGGTGAAAAG
ACCACCCTTTTGATCGAAAGCGGACTGGATGTCTCCATGAGCCTGGATTT
GCTCCGCCACGCTTCCGGCGCGCCCGCTGCCGGTCCACAGGATAGCTCTC
AACCCACGGTGCTAGTAGTTCTAAGTGCACGACCCGAGCTTTCGGAGACT
TTGGACGTGATAGCGGGTAGGAGTGGATCGGTCTTTGTGATCGGTCTCCA
GAAAGAATTGTACGGCACACCGCTCTCGCAATTCGTGACGGGGGGAATCA
CGCTGGACGGGCTCCTTGTCAGCGCAGCCGAAGCCCTTTTGTGGCACCGT
CGTCGGTGCAGGCAGCATTTACAGCAGCGCCAACTTCAGCAGCAACAGCG
ACGGCAAAGCTTATCTCCCCGGGCGGATTTCTGTCCCCATGGGCCGGCTT
GTGACTACCTTCGCGGCACTGCGGCTTACATGTCAGGAGGCGCGAGCAAA
TATAACCCCTTGGATGGTACTATCAGAACCTGTGCACACTGGAAGGAAGT
GAACCAGTCCCACCGCTCCTCTCCAGCTGGGGGGAGCGGGGGAGGAAGCG
GGCAGACGAGCCCTCGCCCCTTCTCGAAGAGTAAACTTGACCATCTCACT
GCCTTCCAGCACACATGTGGTGCAGGCAGGACGTGTCGCAATGGCGGTCC
TTACCATCAAATGGCATTTCCTCATGTCAGCTCCATCACAAGCAGCTGCA
GCAGCAGTAGCTGTGGTCATAGCAAGGGCATGGGTGTCAACCACGGCAAC
TTCCGGGAAGCATGCACTAAAAGAGAGAGTCCCGCCGAGCGACAGGCCTC
GTATACCAGTCACGATGAATGTGATAGACGTCACGTTTGCAACCACTCCA
GCGAGCGCGGCAATCGTGGCGACTTCACGGGTCAGGTCGGGGGCGGTCCA
TTCCGTCCAGCCATGGCCTCTGCCGCCCCTTGTGACCGCTCGGCAGCCAT
TACATCGGTGACGGAGCTCCCTGAAGGGAGGGGGAAAGGAGCGACGCGCG
AAGACGACGGATGGCTTGAGGAGGCAGTCCGGAAGGACTTTTACGGGGAA
GAGGGAGAGGCGTCGCAGGTGACAGCTGACGAGGAGGAGGACGAGGAGAC
AGCGGCGGTGGTGGGACTGCGGGGATGTCTTCCCTCGGTCTCGAAGAGGT
CCTCAAATTGGGGCCGAGCGAAGCAGGGCGAGATTGGGAAGCCCGTCTGG
TGGCAGCGGCTGCGGAGGAGTCACAAGGACGATGAAGAGGAGGATGGCGG
TGAAGACGGTGGCGGGCGTTTGGAGGAGATGGCCGAACTGGAACCAGGCC
GTGACCACCGCGGAGAAGGTGACGAAGAGAGAGATGCAGTCCTGTTCCCA
ATGTCCTTATAAATGGTGGACATGTTGGACACGGCTCCCACGCTAGTCGC
AACATCACACAGTCATGTTGCGGGATGCTCAAAACAGATTTCTGGTTTCA
AGCCTGTTGTTGCGCTAAGTCCTGCGTCCTCGAAAGCCGCTGCACCCTCC
TCCGGCGGGGTGTCTAGACGCGCTGTGTTGGTAATGGATGGTCCACACTT
GCACAAAGCGCTCGACGCTTATTTTCCAGGATTAACCCAAGACGAACTAC
CTGTTGTCGTGCAGGGGCTGATGGCTTCCTTGGAAAGCGAGTTTCGCGTC
ACTTTTAGCAAAAGCATCTTCCATGACTGCAGTACAGCACTGGGCCAGCC
TACCGCATTGGGACGTCTCTTGGCGGCACCCCCAATCGCGGCTCGTATCC
GCATGCATGCTGTGAAAGCAGTGGCAGGCGCCGCCGTTGACCCGCACACG
TGGGAACCAGTCCGCCAAAGCAGCACGAGTAGCCTCTACAGCAGTAATAG
TGGAAGCAGCAGCAGTATTGCATCGCTGTACGGGGGCGGAGAGAACATGC
AGGGCGGTGAAAAGACCACCCTTTTGATCGAAAGCGGACTGGATGTCTCC
ATGAGCCTGGATTTGCTCCGCCACGCTTCCGGCGCGCCCGCTGCCGGTCC
ACAGGATAGCTCTCAACCCACGGTGCTAGTAGTTCTAAGTGCACGACCCG
AGCTTTCGGAGACTTTGGACGTGATAGCGGGTAGGAGTGGATCGGTCTTT
GTGATCGGTCTCCAGAAAGAATTGTACGGCACACCGCTCTCGCAATTCGT
GACGGGGGGAATCACGCTGGACGGGCTCCTTGTCAGCGCAGCCGAAGCCC
TTTTGTGGCACCGTCGTCGGTGCAGGCAGCATTTACAGCAGCGCCAACTT
CAGCAGCAACAGCGACGGCAAAGCTTATCTCCCCGGGCGGATTTCTGTCC
CCATGGGCCGGCTTGTGACTACCTTCGCGGCACTGCGGCTTACATGTCAG
GAGGCGCGAGCAAATATAACCCCTTGGATGGTACTATCAGAACCTGTGCA
CACTGGAAGGAAGTGAACCAGTCCCACCGCTCCTCTCCAGCTGGGGGGAG
CGGGGGAGGAAGCGGGCAGACGAGCCCTCGCCCCTTCTCGAAGAGTAAAC
TTGACCATCTCACTGCCTTCCAGCACACATGTGGTGCAGGCAGGACGTGT
CGCAATGGCGGTCCTTACCATCAAATGGCATTTCCTCATGTCAGCTCCAT
CACAAGCAGCTGCAGCAGCAGTAGCTGTGGTCATAGCAAGGGCATGGGTG
TCAACCACGGCAACTTCCGGGAAGCATGCACTAAAAGAGAGAGTCCCGCC
GAGCGACAGGCCTCGTATACCAGTCACGATGAATGTGATAGACGTCACGT
TTGCAACCACTCCAGCGAGCGCGGCAATCGTGGCGACTTCACGGGTCAGG
TCGGGGGCGGTCCATTCCGTCCAGCCATGGCCTCTGCCGCCCCTTGTGAC
CGCTCGGCAGCCATTACATCGGTGACGGAGCTCCCTGAAGGGAGGGGGAA
AGGAGCGACGCGCGAAGACGACGGATGGCTTGAGGAGGCAGTCCGGAAGG
ACTTTTACGGGGAAGAGGGAGAGGCGTCGCAGGTGACAGCTGACGAGGAG
GAGGACGAGGAGACAGCGGCGGTGGTGGGACTGCGGGGATGTCTTCCCTC
GGTCTCGAAGAGGTCCTCAAATTGGGGCCGAGCGAAGCAGGGCGAGATTG
GGAAGCCCGTCTGGTGGCAGCGGCTGCGGAGGAGTCACAAGGACGATGAA
GAGGAGGATGGCGGTGAAGACGGTGGCGGGCGTTTGGAGGAGATGGCCGA
ACTGGAACCAGGCCGTGACCACCGCGGAGAAGGTGACGAAGAGAGAGATG
CAGTCCTGTTCCCAATGTCCTTATAAATGGTGGACATGTTGGACACGGCT
CCCACGCTAGTCGCAACATCACACAGTCATGTTGCGGGATGCTCAAAACA
GATTTCTGGTTTCAAGCCTGTTGTTGCGCTAAGTCCTGCGTCCTCGAAAG
CCGCTGCACCCTCCTCCGGCGGGGTGTCTAGACGCGCTGTGTTGGTAATG
GATGGTCCACACTTGCACAAAGCGCTCGACGCTTATTTTCCAGGATTAAC
CCAAGACGAACTACCTGTTGTCGTGCAGGGGCTGATGGCTTCCTTGGAAA
GCGAGTTTCGCGTCACTTTTAGCAAAAG back to top
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