EWM24205.1, cds6463 (CDS) Nannochloropsis gaditana

Overview
NameEWM24205.1
Unique Namecds6463
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:605360..605661 -
Alignment locationCM002468.1:603275..604886 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24205.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100217g7.6974.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:605360..605661 -
CM002468.1supercontigCM002468.1:603275..604886 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24205.1 vs. NCBI_GenBank
Match: gi|585105594|gb|EWM24205.1| (hypothetical protein Naga_100217g7 [Nannochloropsis gaditana])

HSP 1 Score: 1303.89 bits (3373), Expect = 0.000e+0
Identity = 637/637 (100.00%), Postives = 637/637 (100.00%), Query Frame = 0 
Query:    1 MVDMLDTAPTLVATSHSHVAGCSKQISGFKPVVALSPASSKAAAPSSGGVSRRAVLVMDGPHLHKALDAYFPGLTQDELPVVVQGLMASLESEFRVTFSKSIFHDCSTALGQPTALGRLLAAPPIAARIRMHAVKAVAGAAVDPHTWEPVRQSSTSSLYSSNSGSSSSIASLYGGGENMQGGEKTTLLIESGLDVSMSLDLLRHASGAPAAGPQDSSQPTVLVVLSARPELSETLDVIAGRSGSVFVIGLQKELYGTPLSQFVTGGITLDGLLVSAAEALLWHRRRCRQHLQQRQLQQQQRRQSLSPRADFCPHGPACDYLRGTAAYMSGGASKYNPLDGTIRTCAHWKEVNQSHRSSPAGGSGGGSGQTSPRPFSKSKLDHLTAFQHTCGAGRTCRNGGPYHQMAFPHVSSITSSCSSSSCGHSKGMGVNHGNFREACTKRESPAERQASYTSHDECDRRHVCNHSSERGNRGDFTGQVGGGPFRPAMASAAPCDRSAAITSVTELPEGRGKGATREDDGWLEEAVRKDFYGEEGEASQVTADEEEDEETAAVVGLRGCLPSVSKRSSNWGRAKQGEIGKPVWWQRLRRSHKDDEEEDGGEDGGGRLEEMAELEPGRDHRGEGDEERDAVLFPMSL 637
            MVDMLDTAPTLVATSHSHVAGCSKQISGFKPVVALSPASSKAAAPSSGGVSRRAVLVMDGPHLHKALDAYFPGLTQDELPVVVQGLMASLESEFRVTFSKSIFHDCSTALGQPTALGRLLAAPPIAARIRMHAVKAVAGAAVDPHTWEPVRQSSTSSLYSSNSGSSSSIASLYGGGENMQGGEKTTLLIESGLDVSMSLDLLRHASGAPAAGPQDSSQPTVLVVLSARPELSETLDVIAGRSGSVFVIGLQKELYGTPLSQFVTGGITLDGLLVSAAEALLWHRRRCRQHLQQRQLQQQQRRQSLSPRADFCPHGPACDYLRGTAAYMSGGASKYNPLDGTIRTCAHWKEVNQSHRSSPAGGSGGGSGQTSPRPFSKSKLDHLTAFQHTCGAGRTCRNGGPYHQMAFPHVSSITSSCSSSSCGHSKGMGVNHGNFREACTKRESPAERQASYTSHDECDRRHVCNHSSERGNRGDFTGQVGGGPFRPAMASAAPCDRSAAITSVTELPEGRGKGATREDDGWLEEAVRKDFYGEEGEASQVTADEEEDEETAAVVGLRGCLPSVSKRSSNWGRAKQGEIGKPVWWQRLRRSHKDDEEEDGGEDGGGRLEEMAELEPGRDHRGEGDEERDAVLFPMSL
Sbjct:    1 MVDMLDTAPTLVATSHSHVAGCSKQISGFKPVVALSPASSKAAAPSSGGVSRRAVLVMDGPHLHKALDAYFPGLTQDELPVVVQGLMASLESEFRVTFSKSIFHDCSTALGQPTALGRLLAAPPIAARIRMHAVKAVAGAAVDPHTWEPVRQSSTSSLYSSNSGSSSSIASLYGGGENMQGGEKTTLLIESGLDVSMSLDLLRHASGAPAAGPQDSSQPTVLVVLSARPELSETLDVIAGRSGSVFVIGLQKELYGTPLSQFVTGGITLDGLLVSAAEALLWHRRRCRQHLQQRQLQQQQRRQSLSPRADFCPHGPACDYLRGTAAYMSGGASKYNPLDGTIRTCAHWKEVNQSHRSSPAGGSGGGSGQTSPRPFSKSKLDHLTAFQHTCGAGRTCRNGGPYHQMAFPHVSSITSSCSSSSCGHSKGMGVNHGNFREACTKRESPAERQASYTSHDECDRRHVCNHSSERGNRGDFTGQVGGGPFRPAMASAAPCDRSAAITSVTELPEGRGKGATREDDGWLEEAVRKDFYGEEGEASQVTADEEEDEETAAVVGLRGCLPSVSKRSSNWGRAKQGEIGKPVWWQRLRRSHKDDEEEDGGEDGGGRLEEMAELEPGRDHRGEGDEERDAVLFPMSL 637
[Close]
BLAST of EWM24205.1 vs. NCBI_GenBank
Match: gi|585105595|gb|EWM24206.1| (hypothetical protein Naga_100217g7 [Nannochloropsis gaditana])

HSP 1 Score: 1098.58 bits (2840), Expect = 0.000e+0
Identity = 547/583 (93.83%), Postives = 550/583 (94.34%), Query Frame = 0 
Query:   56 LVMDG-PHLHKALDAYFPGLTQDELPVVVQGLMASLESEFRVTFSKSIFHDCSTALGQPTALGRLLAAPPIAARIRMHAVKAVAGAAVDPHTWEPVRQSSTSSLYSSNSGSSSSIASLYGGGENMQGGEKTTLLIESGLDVSMSLDLLRHASGAPAAGPQDSSQPTVLVVLSARPELSETLDVIAGRSGSVFVIGLQKELYGTPLSQFVTGGITLDGLLVSAAEALLWHRRRCRQHLQQRQLQQQQRRQSLSPRADFCPHGPACDYLRGTAAYMSGGASKYNPLDGTIRTCAHWKEVNQSHRSSPAGGSGGGSGQTSPRPFSKSKLDHLTAFQHTCGAGRTCRNGGPYHQMAFPHVSSITSSCSSSSCGHSKGMGVNHGNFREACTKRESPAERQASYTSHDECDRRHVCNHSSERGNRGDFTGQVGGGPFRPAMASAAPCDRSAAITSVTELPEGRGKGATREDDGWLEEAVRKDFYGEEGEASQVTADEEEDEETAAVVGLRGCLPSVSKRSSNWGRAKQGEIGKPVWWQRLRRSHKDDEEEDGGEDGGGRLEEMAELEPGRDHRGEGDEERDAVLFPMSL 637
            LV DG    H A   + P      LP   Q  +      +      SIFHDCSTALGQPTALGRLLAAPPIAARIRMHAVKAVAGAAVDPHTWEPVRQSSTSSLYSSNSGSSSSIASLYGGGENMQGGEKTTLLIESGLDVSMSLDLLRHASGAPAAGPQDSSQPTVLVVLSARPELSETLDVIAGRSGSVFVIGLQKELYGTPLSQFVTGGITLDGLLVSAAEALLWHRRRCRQHLQQRQLQQQQRRQSLSPRADFCPHGPACDYLRGTAAYMSGGASKYNPLDGTIRTCAHWKEVNQSHRSSPAGGSGGGSGQTSPRPFSKSKLDHLTAFQHTCGAGRTCRNGGPYHQMAFPHVSSITSSCSSSSCGHSKGMGVNHGNFREACTKRESPAERQASYTSHDECDRRHVCNHSSERGNRGDFTGQVGGGPFRPAMASAAPCDRSAAITSVTELPEGRGKGATREDDGWLEEAVRKDFYGEEGEASQVTADEEEDEETAAVVGLRGCLPSVSKRSSNWGRAKQGEIGKPVWWQRLRRSHKDDEEEDGGEDGGGRLEEMAELEPGRDHRGEGDEERDAVLFPMSL
Sbjct:   50 LVCDGITWTHAAFQIHLP----HPLPSPSQSRLTRFIPHY------SIFHDCSTALGQPTALGRLLAAPPIAARIRMHAVKAVAGAAVDPHTWEPVRQSSTSSLYSSNSGSSSSIASLYGGGENMQGGEKTTLLIESGLDVSMSLDLLRHASGAPAAGPQDSSQPTVLVVLSARPELSETLDVIAGRSGSVFVIGLQKELYGTPLSQFVTGGITLDGLLVSAAEALLWHRRRCRQHLQQRQLQQQQRRQSLSPRADFCPHGPACDYLRGTAAYMSGGASKYNPLDGTIRTCAHWKEVNQSHRSSPAGGSGGGSGQTSPRPFSKSKLDHLTAFQHTCGAGRTCRNGGPYHQMAFPHVSSITSSCSSSSCGHSKGMGVNHGNFREACTKRESPAERQASYTSHDECDRRHVCNHSSERGNRGDFTGQVGGGPFRPAMASAAPCDRSAAITSVTELPEGRGKGATREDDGWLEEAVRKDFYGEEGEASQVTADEEEDEETAAVVGLRGCLPSVSKRSSNWGRAKQGEIGKPVWWQRLRRSHKDDEEEDGGEDGGGRLEEMAELEPGRDHRGEGDEERDAVLFPMSL 622
The following BLAST results are available for this feature:
BLAST of EWM24205.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105594|gb|EWM24205.1|0.000e+0100.00hypothetical protein Naga_100217g7 [Nannochloropsi... [more]
gi|585105595|gb|EWM24206.1|0.000e+093.83hypothetical protein Naga_100217g7 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6479rna6479Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications