rna6468, rna6468 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6468
Unique Name	rna6468
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2405
Alignment location	CM002468.1:574848..576831 -

Link to JBrowse

Properties


Property Name	Value
Product	Pentatricopeptide repeat containing protein
Orig transcript id	gnl\|cribi\|Naga_100020g9.5397.mrna
Orig protein id	gnl\|cribi\|Naga_100020g9.5397
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:574848..576831 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g9	gene6250	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24264.1	cds6452	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6468	rna6468-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:574848..576831-
coding sequence from alignment at CM002468.1:574848..576831-

mRNA sequence

>rna6468 ID=rna6468|Name=rna6468|organism=Nannochloropsis gaditana|type=mRNA|length=2405bp
TGTGGCGTCCAGTCCCATCTAAACATGGCATCACCTCTGCCTGCTCGTCG
ACGGCGGTGGTACGTCCCGACCATACATGTCCTTTTGCTGAGCGGTTGGG
CCGCCATTTCGGAGGCGTTTGCCGTCCAGGGATGCAACGCTCCAGCAATA
AGAGCGTTGACATCATCCTCATCGAAGCCCGCGGCATCCAGTGGAGTGGC
GTCTGTGTACCGCAATGACTGTTGCAAAGCCCCGTCTACCTGTAAACCTC
TGCAGACCGTCGGCCCCCTCATGATGATGCCTGATAGCAGCAATATTGGA
AGAGACATACATGAAAGCAGTCGTAGCTGCCAGAACATCTATATTGTGGG
TAAACCCAGCTGTAGGAAAGCAGTGGCAGAGGCCTTGAGCACTGCAATGG
GGTTGCCTGTTATTCAAGCTTCGAGTGCTGCCACACTCCTTCCATCCTCC
TCCGCCATCGTCGACGTTGACGATTCTGTCATTACTGAGAACGAGGGCGC
CACCATACTGAGTGCATTGGGTCTTGTCATCAGATTGGTGGAAATGGATG
ACTTTTCAGGAGTTGGAAAAGAGCGAGACCGGCAGAAAGAGCGTCAAGCA
GTGAGCCGATTTGATGTGGCGGTAGGCGCCGAGGACGACATTGCGCACAC
CTACGTCGTGAAGCATATTCAGAACTTGAGACGCCTCTCGGGAGGATACG
GTGACCATGCGGTGGATCCTTCGCTGGACCTGGATTTAGGGGCCAACACG
TTCTTCCTGTCTCTCACCTTCCCCGACGTGCGGGAGTGCCTCCCCCTCCT
GCCCGGGCTGGAAAGAGGCGTGGACGCCTTGGAGCTTCGCGTGGACCTTC
TCCGCGACAAGACGCCCTGGGACATCCTCCGTCAGGTCGCCATTCTAAAA
TCTGCCACGAGGCTCCCCGTCATTTTTACAGTGAGATCTCAGGACCAATG
TGGCGCCTTCCCAAACGAGCCGGCGGCTATCTTCGACCTCCTGGCCCTCG
GGCTGCGGGCAGGCGTAGAGGTGCTTGACGTGGAAGCGTGCTGGGACCGG
AAGGCTCGTGAGTCTCTTTTAACTGAGGCTTGGCGGGGCTATCGGGGCAC
CACGCGCCTGTTGGGATCCTACCACGTAGTGGGCCGCCGCGTCCCCGACC
GAGAAGCCCTGGAGATTTTCCAAGAGTGCTACCACGATGGGAGGGTCGAC
GCCGTCAAGGTGGTGCTGACAGCTCACAGCGTCCGCGATACCTACCGCGT
GCACGAATTGGCAGCGGCCGCCGGCCTCCCTCCTTCCCTCCCCGTGGTGG
CGCTGTGCCTGGGCGAGGTCGGGAAACTGAGCCGAGTCTTGAACAGCCGG
TATACGCCCGTCACCAGCAAACTTCTGCCCTACGTGGCCGCCCCCGGCCA
ATTGACCGCGGAAGAAATCATGAGGCTGCGTCAGGACCTGGGCATGGTCC
CTACGTCCTCCTTCTGTCTGCTCGGAAGCCCGATCGCCCAGTCCCCCTCC
CCGGCTATGCATACGGCCGCTTTTCAACACTGCCTGTTGCCGCACACCTA
CAGCTTCCTTGAGACCGAGGACGTGCTTGATCTCAAGGCGCGCGCGAAGG
AAGGGCGTTTTGGGGGCGCCTCCGTGACCATCCCGCACAAGCAAGCCGTC
ATCCCGCTCTTGGACCGGGTGGAGCCCTCCGCTGAGGCGATCGGGGCGGT
GAACACGGTGGTGGTGGAGGAGGACCCGACGACGGGGTCCGTGCGCTGGG
TCGGCCACAACACGGACTGGAAAGGCATCGTCCAGCCCGTGACCCGCCGG
CTCCGGGAGGCGGGGCGCGGGTTAAGGGACGACAAGGGCAGGCCTCGAGT
TGCCCTAGTGGTGGGCGGGGGGGGGACGGCACTCGCCGCGGCCTATGGCA
TGACCTCCCTCGGTATGCGCCTTCTCGTCTTTAACCGCACCCCCAGCAAA
GCCCACGACGTAGTGCGTCGCTTCGGGGGTAAGGTCTTGGAGTCTCTGTC
GCCGGAAGCCGTCCTGGCCGCCACGGAGGGCCAGCAAGATCACTTGGACG
TGGTGGTATCCACGGTGCCTGCCAGTGCCGAGTTCGTCTTGCCCGACGCC
ATGCTCCTGGCGCGACCTGTGGTGATGGACGCTGCCTACCGGCCGGCCGA
AACAAGCTTGCTCGCTCAGGCTCGAGCCGCCGGGTGCCCCTACGTGCAAG
GCGCGGAGATGCTCATCGCCCAGGGGGTGGAGCAATTCCAGCTCTGGACG
CGCCGGAGAGCACCCGAGGAAGTGATGCGGGCGGCGGTGTACGCGACGGT
GGAGGAGCTCAAGTAGCTCAACACGAAGGAGTGAGAGGTAGAAGGCGGAT
GACGGCGGAAAGTGTAAAAGTAAAGCATCTAAATCAAACTCAAACCGATT
CGAGC

protein sequence of rna6468

>rna6468-protein ID=rna6468-protein|Name=rna6468|organism=Nannochloropsis gaditana|type=polypeptide|length=544bp
MDLRTVNIMAGYLARTKGFDEAQAMVEDVRRGAPGIEPRAVTHNILLDAL
LKARRVEEALEYFYAVAAEASSAGPGPDKSARRGSRGERGRQGGGWRKER
EKEVALVDSTTYDILLNGLVQNGRVSTAGAVHTMMRKAQFPPTMYTYAAL
IRLQKSALDVYRLWGQARADYPRLSLPFLNLLVYELGQSHNDLPGALAAF
RAILRMGRQPNTISFNSLFSALMKDANACLPRWTPPLEEGGEEGPDKTGE
RLSHGQGYLLEDEYPAVSALSSEGRGLISLLESLQDRTLLEASLVVLRSM
YHEGKRPSSSKETREGSETGNENMLQGYELGQGRASSPPSVTASARPNAR
TFTILMAGINRADLGPRGTALCIALYHEAQEDGVSPNGIMCHALLRSFGP
DAKGALGFFKRELRVSLKALDAVDRAEEAARGLEDETEDGREIDGVFTSG
GNLSLAYMALLYICGVSGRSDLALQLLYAMQRDGLPTDQNVWEAFEAGKT
APGAAATATSSMGQLWMGPYESLLRTETIGLGWETGVRRVRIKF

mRNA from alignment at CM002468.1:574848..576831-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6468 ID=rna6468|Name=rna6468|organism=Nannochloropsis gaditana|type=mRNA|length=1984bp|location=Sequence derived from alignment at CM002468.1:574848..576831- (Nannochloropsis gaditana)
CATGGACTTACGGACCGTGAACATCATGGCCGGATACCTAGCGCGGACGA
AGGGCTTCGACGAGGCCCAGGCGATGGTAGAAGACGTGAGAAGGGGGGCC
CCGGGGATCGAACCGAGGGCGGTCACGCACAACATCCTTCTCGACGCGCT
GCTGAAGGCGAGACGGGTGGAGGAGGCCCTGGAGTACTTCTATGCCGTGG
CCGCAGAGGCCTCGTCTGCTGGCCCTGGGCCTGACAAGAGCGCACGGAGA
GGGAGCAGGGGGGAGAGAGGGCGCCAAGGCGGGGGCTGGAGGAAGGAGCG
GGAGAAGGAAGTCGCCTTGGTGGACAGCACCACCTACGACATCCTCCTGA
ACGGGCTCGTGCAAAACGGACGAGTCTCCACGGCCGGGGCAGTCCATACC
ATGATGCGCAAGGCTCAGTTTCCGCCCACCATGTACACCTACGCAGCCCT
CATCCGCCTGCAGAAGAGTGCCCTGGACGTGTACCGGCTGTGGGGCCAGG
CGCGCGCGGACTACCCACGGCTCAGCCTCCCTTTCCTCAACCTGTTGGTT
TACGAGCTCGGGCAGTCCCACAACGACTTGCCGGGGGCCCTGGCCGCCTT
TCGCGCCATTCTTCGGATGGGTCGTCAGCCCAACACCATTTCTTTCAACT
CTCTTTTCTCCGCTCTTATGAAGGACGCCAATGCCTGCCTTCCCAGATGG
ACCCCCCCTCTTGAGGAAGGGGGGGAGGAGGGGCCGGACAAGACCGGGGA
GCGACTGTCCCACGGGCAGGGATATCTTTTGGAAGACGAGTATCCTGCTG
TGTCGGCTCTCTCGAGCGAGGGTCGCGGGCTGATATCCCTTCTCGAGTCT
CTGCAGGATAGGACCCTTCTGGAAGCCTCCTTGGTTGTGCTTCGGAGCAT
GTACCATGAGGGGAAAAGACCCTCAAGCTCGAAGGAGACCAGAGAGGGTT
CCGAGACAGGCAACGAGAATATGCTTCAAGGGTATGAGCTTGGGCAGGGA
CGCGCATCCTCCCCCCCCTCCGTGACCGCTTCAGCGCGTCCCAACGCCCG
GACCTTCACCATCCTGATGGCCGGCATCAACCGGGCGGACCTGGGGCCTC
GAGGGACTGCTCTTTGCATTGCCCTGTACCACGAAGCCCAAGAAGATGGT
GTGTCCCCGAACGGTATCATGTGCCATGCTTTGCTCCGCTCATTCGGGCC
GGACGCGAAAGGGGCCCTGGGTTTCTTCAAGCGGGAACTCCGGGTCTCTC
TGAAGGCACTGGATGCGGTCGACCGCGCGGAGGAGGCAGCGAGAGGATTG
GAAGACGAGACAGAGGATGGACGAGAAATCGACGGGGTCTTTACGTCCGG
TGGGAATCTGTCGCTGGCTTACATGGCCTTGCTCTACATCTGTGGGGTCT
CCGGGCGTTCCGATTTGGCCCTGCAGTTGCTCTATGCTATGCAGCGGGAC
GGACTGCCCACTGATCAAAATGTTTGGGAGGCTTTTGAGGCGGGCAAAAC
CGCTCCTGGCGCTGCCGCTACTGCCACGTCGTCCATGGGCCAGTTGTGGA
TGGGCCCCTACGAGTCTCTGCTGCGGACAGAGACTATTGGCTTGGGATGG
GAAACGGGTGTGAGGCGAGTGCGAATAAAATTCTGAGGACCTTACCGGCA
GTGTACACAACAGAAATTGAAAGGCAAAATGCTCCTGCTAACCAATCCGT
TTTTGCAATATCTGCAGCTTGTAATATAAAGGAACAATAACTTTTTAAAT
ATAAAGGAAAAGAGATTGTCAGGTTTTAACCTCCTCCCATTTGGGCCTGC
CCACCGCATTACCGTGAGGAAACCAGGAGCGAGATTCGTGTCAGTATCCG
AAGATTTTTCTCCCGCAGATGCCAATAGCGTCTAAAGGAGCCATCTGATG
GGGTACATTTAAGATAACTTGTGTCGGTGCCCACTTTATTGACCACCAAC
CGCTAGCTTTCTATCCGGGCAGCTCTCGCTCAGG

Coding sequence (CDS) from alignment at CM002468.1:574848..576831-

>rna6468 ID=rna6468|Name=rna6468|organism=Nannochloropsis gaditana|type=CDS|length=1635bp|location=Sequence derived from alignment at CM002468.1:574848..576831- (Nannochloropsis gaditana)
ATGGACTTACGGACCGTGAACATCATGGCCGGATACCTAGCGCGGACGAA
GGGCTTCGACGAGGCCCAGGCGATGGTAGAAGACGTGAGAAGGGGGGCCC
CGGGGATCGAACCGAGGGCGGTCACGCACAACATCCTTCTCGACGCGCTG
CTGAAGGCGAGACGGGTGGAGGAGGCCCTGGAGTACTTCTATGCCGTGGC
CGCAGAGGCCTCGTCTGCTGGCCCTGGGCCTGACAAGAGCGCACGGAGAG
GGAGCAGGGGGGAGAGAGGGCGCCAAGGCGGGGGCTGGAGGAAGGAGCGG
GAGAAGGAAGTCGCCTTGGTGGACAGCACCACCTACGACATCCTCCTGAA
CGGGCTCGTGCAAAACGGACGAGTCTCCACGGCCGGGGCAGTCCATACCA
TGATGCGCAAGGCTCAGTTTCCGCCCACCATGTACACCTACGCAGCCCTC
ATCCGCCTGCAGAAGAGTGCCCTGGACGTGTACCGGCTGTGGGGCCAGGC
GCGCGCGGACTACCCACGGCTCAGCCTCCCTTTCCTCAACCTGTTGGTTT
ACGAGCTCGGGCAGTCCCACAACGACTTGCCGGGGGCCCTGGCCGCCTTT
CGCGCCATTCTTCGGATGGGTCGTCAGCCCAACACCATTTCTTTCAACTC
TCTTTTCTCCGCTCTTATGAAGGACGCCAATGCCTGCCTTCCCAGATGGA
CCCCCCCTCTTGAGGAAGGGGGGGAGGAGGGGCCGGACAAGACCGGGGAG
CGACTGTCCCACGGGCAGGGATATCTTTTGGAAGACGAGTATCCTGCTGT
GTCGGCTCTCTCGAGCGAGGGTCGCGGGCTGATATCCCTTCTCGAGTCTC
TGCAGGATAGGACCCTTCTGGAAGCCTCCTTGGTTGTGCTTCGGAGCATG
TACCATGAGGGGAAAAGACCCTCAAGCTCGAAGGAGACCAGAGAGGGTTC
CGAGACAGGCAACGAGAATATGCTTCAAGGGTATGAGCTTGGGCAGGGAC
GCGCATCCTCCCCCCCCTCCGTGACCGCTTCAGCGCGTCCCAACGCCCGG
ACCTTCACCATCCTGATGGCCGGCATCAACCGGGCGGACCTGGGGCCTCG
AGGGACTGCTCTTTGCATTGCCCTGTACCACGAAGCCCAAGAAGATGGTG
TGTCCCCGAACGGTATCATGTGCCATGCTTTGCTCCGCTCATTCGGGCCG
GACGCGAAAGGGGCCCTGGGTTTCTTCAAGCGGGAACTCCGGGTCTCTCT
GAAGGCACTGGATGCGGTCGACCGCGCGGAGGAGGCAGCGAGAGGATTGG
AAGACGAGACAGAGGATGGACGAGAAATCGACGGGGTCTTTACGTCCGGT
GGGAATCTGTCGCTGGCTTACATGGCCTTGCTCTACATCTGTGGGGTCTC
CGGGCGTTCCGATTTGGCCCTGCAGTTGCTCTATGCTATGCAGCGGGACG
GACTGCCCACTGATCAAAATGTTTGGGAGGCTTTTGAGGCGGGCAAAACC
GCTCCTGGCGCTGCCGCTACTGCCACGTCGTCCATGGGCCAGTTGTGGAT
GGGCCCCTACGAGTCTCTGCTGCGGACAGAGACTATTGGCTTGGGATGGG
AAACGGGTGTGAGGCGAGTGCGAATAAAATTCTGA

Synonyms

Publications