EWM24264.1, cds6452 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24264.1 vs. NCBI_GenBank
Match: gi|585105655|gb|EWM24264.1| (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana]) HSP 1 Score: 1103.97 bits (2854), Expect = 0.000e+0 Identity = 544/544 (100.00%), Postives = 544/544 (100.00%), Query Frame = 0 Query: 1 MDLRTVNIMAGYLARTKGFDEAQAMVEDVRRGAPGIEPRAVTHNILLDALLKARRVEEALEYFYAVAAEASSAGPGPDKSARRGSRGERGRQGGGWRKEREKEVALVDSTTYDILLNGLVQNGRVSTAGAVHTMMRKAQFPPTMYTYAALIRLQKSALDVYRLWGQARADYPRLSLPFLNLLVYELGQSHNDLPGALAAFRAILRMGRQPNTISFNSLFSALMKDANACLPRWTPPLEEGGEEGPDKTGERLSHGQGYLLEDEYPAVSALSSEGRGLISLLESLQDRTLLEASLVVLRSMYHEGKRPSSSKETREGSETGNENMLQGYELGQGRASSPPSVTASARPNARTFTILMAGINRADLGPRGTALCIALYHEAQEDGVSPNGIMCHALLRSFGPDAKGALGFFKRELRVSLKALDAVDRAEEAARGLEDETEDGREIDGVFTSGGNLSLAYMALLYICGVSGRSDLALQLLYAMQRDGLPTDQNVWEAFEAGKTAPGAAATATSSMGQLWMGPYESLLRTETIGLGWETGVRRVRIKF 544 MDLRTVNIMAGYLARTKGFDEAQAMVEDVRRGAPGIEPRAVTHNILLDALLKARRVEEALEYFYAVAAEASSAGPGPDKSARRGSRGERGRQGGGWRKEREKEVALVDSTTYDILLNGLVQNGRVSTAGAVHTMMRKAQFPPTMYTYAALIRLQKSALDVYRLWGQARADYPRLSLPFLNLLVYELGQSHNDLPGALAAFRAILRMGRQPNTISFNSLFSALMKDANACLPRWTPPLEEGGEEGPDKTGERLSHGQGYLLEDEYPAVSALSSEGRGLISLLESLQDRTLLEASLVVLRSMYHEGKRPSSSKETREGSETGNENMLQGYELGQGRASSPPSVTASARPNARTFTILMAGINRADLGPRGTALCIALYHEAQEDGVSPNGIMCHALLRSFGPDAKGALGFFKRELRVSLKALDAVDRAEEAARGLEDETEDGREIDGVFTSGGNLSLAYMALLYICGVSGRSDLALQLLYAMQRDGLPTDQNVWEAFEAGKTAPGAAATATSSMGQLWMGPYESLLRTETIGLGWETGVRRVRIKF Sbjct: 1 MDLRTVNIMAGYLARTKGFDEAQAMVEDVRRGAPGIEPRAVTHNILLDALLKARRVEEALEYFYAVAAEASSAGPGPDKSARRGSRGERGRQGGGWRKEREKEVALVDSTTYDILLNGLVQNGRVSTAGAVHTMMRKAQFPPTMYTYAALIRLQKSALDVYRLWGQARADYPRLSLPFLNLLVYELGQSHNDLPGALAAFRAILRMGRQPNTISFNSLFSALMKDANACLPRWTPPLEEGGEEGPDKTGERLSHGQGYLLEDEYPAVSALSSEGRGLISLLESLQDRTLLEASLVVLRSMYHEGKRPSSSKETREGSETGNENMLQGYELGQGRASSPPSVTASARPNARTFTILMAGINRADLGPRGTALCIALYHEAQEDGVSPNGIMCHALLRSFGPDAKGALGFFKRELRVSLKALDAVDRAEEAARGLEDETEDGREIDGVFTSGGNLSLAYMALLYICGVSGRSDLALQLLYAMQRDGLPTDQNVWEAFEAGKTAPGAAATATSSMGQLWMGPYESLLRTETIGLGWETGVRRVRIKF 544
BLAST of EWM24264.1 vs. NCBI_GenBank
Match: gi|553196307|ref|XP_005856314.1| (hypothetical protein NGA_2018400, partial [Nannochloropsis gaditana CCMP526] >gi|422292735|gb|EKU20037.1| hypothetical protein NGA_2018400, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 676.781 bits (1745), Expect = 0.000e+0 Identity = 332/333 (99.70%), Postives = 332/333 (99.70%), Query Frame = 0 Query: 189 SHNDLPGALAAFRAILRMGRQPNTISFNSLFSALMKDANACLPRWTPPLEEGGEEGPDKTGERLSHGQGYLLEDEYPAVSALSSEGRGLISLLESLQDRTLLEASLVVLRSMYHEGKRPSSSKETREGSETGNENMLQGYELGQGRASSPPSVTASARPNARTFTILMAGINRADLGPRGTALCIALYHEAQEDGVSPNGIMCHALLRSFGPDAKGALGFFKRELRVSLKALDAVDRAEEAARGLEDETEDGREIDGVFTSGGNLSLAYMALLYICGVSGRSDLALQLLYAMQRDGLPTDQNVWEAFEAGKTAPGAAATATSSMGQLWMGPYE 521 SHNDLPGALAAFRAILRMGRQPNTISFNSLFSALMKDANACLPRWTPPLEEGGEEGPDKTGERLSHGQGYLLEDEYPAVSALSSEGRGLISLLESLQDRTLLEASLVVLRSMYHEGKRPSSSKETREGSETGNENMLQGYELGQGRASSPPSVTASARPNARTFTILMAGINRADLGPRGTALCIALYHEAQEDGVSPNGIMCHALLRSFGPDAKGALGFFKRELRVSLKALDAVDR EEAARGLEDETEDGREIDGVFTSGGNLSLAYMALLYICGVSGRSDLALQLLYAMQRDGLPTDQNVWEAFEAGKTAPGAAATATSSMGQLWMGPYE Sbjct: 1 SHNDLPGALAAFRAILRMGRQPNTISFNSLFSALMKDANACLPRWTPPLEEGGEEGPDKTGERLSHGQGYLLEDEYPAVSALSSEGRGLISLLESLQDRTLLEASLVVLRSMYHEGKRPSSSKETREGSETGNENMLQGYELGQGRASSPPSVTASARPNARTFTILMAGINRADLGPRGTALCIALYHEAQEDGVSPNGIMCHALLRSFGPDAKGALGFFKRELRVSLKALDAVDRVEEAARGLEDETEDGREIDGVFTSGGNLSLAYMALLYICGVSGRSDLALQLLYAMQRDGLPTDQNVWEAFEAGKTAPGAAATATSSMGQLWMGPYE 333
BLAST of EWM24264.1 vs. NCBI_GenBank
Match: gi|1210524079|dbj|GAX16808.1| (hypothetical protein FisN_5Hh180 [Fistulifera solaris]) HSP 1 Score: 81.6481 bits (200), Expect = 1.498e-12 Identity = 57/209 (27.27%), Postives = 101/209 (48.33%), Query Frame = 0 Query: 346 RPNARTFTILMAGINRADLGPRGTALCIALYHEAQEDGVSPNGIMCHALLRSFGPDAKGALGFFKRELRVSLKALDAVDRAEEAARGLEDETEDGREIDGVFTSGG-NLSLAYMALLYICGVSGRSDLALQLLYAMQRDGLPTDQNVWEAFEAGKTAPGAAATATSSMGQLWM-------GPYESLLRTETIGLGWE----TGVRRVRI 542 +P+++TF ++ + + G ++ + L+ +A GV+ +G +A+ R +G D A+ +K E+R + L T DG+ I + NL AY LL++CG + RSD+AL+++YAM+++GL + F +GK ++ + + Q W+ PYESLL E + +G +RVRI Sbjct: 635 KPDSQTFCLVASTLQN---GKTNASVALELFRQATRVGVTADGRFINAIFRCYGDDVDAAISAWKGEIR---------------SFCLSHATHDGKSIASQRRARNINLFAAYNGLLFVCGRARRSDIALRVVYAMKKEGLDPSELSLNCFNSGKR----KLSSNNELSQSWLTKRLKFADPYESLLYVECMKYDKNDRRRSGEKRVRI 821
BLAST of EWM24264.1 vs. NCBI_GenBank
Match: gi|527196642|gb|EPS65432.1| (hypothetical protein M569_09342, partial [Genlisea aurea]) HSP 1 Score: 77.411 bits (189), Expect = 3.001e-11 Identity = 66/229 (28.82%), Postives = 110/229 (48.03%), Query Frame = 0 Query: 1 MDLRTVNIMAGYLARTKGFDEAQAMVEDVRRGAPGIEPRAVTHNILLDALLKARRVEEALEYFYAVAAEASSAGPGPDKSAR-RGSRGERGRQGGGWRKEREKEVALVDSTTYDILLNGLVQNGRVSTAGAVHTMMRKAQFPPTMYTYAALIR--LQKSALD--VYRLWGQARADYPRLSLPFLNLLVYELGQSHNDLPGALAAFRAILRMGRQPNTISFNSLFSALMK 224 MDL T + + L + FD AQ + ED+ GI P AV +N +L+ KA+RVE+ E + ++ E + + R G+ G+ G W +E DSTTY IL++GL +NG + V ++ + Y+++I +++ LD V L G +++ + + P N L+ S + L A+A FR + + P I+FN+L + L K Sbjct: 288 MDLFTYSSLINGLCESGDFDGAQTVYEDM--AVNGISPDAVVNNAMLNGFFKAKRVEKCFELWDSMGREGNRNIASFNVMMRGLFGVGKVGKAIGVWELMKESCFE-ADSTTYGILIDGLCKNGYFQKSLLVFETAKEKGVSLDPFAYSSIINGLCKEAKLDEAVAVLNGMIQSE-CKPTAPVYNALINGF-VSASKLDDAIAFFRQMEGINCPPTVITFNTLINGLCK 511
BLAST of EWM24264.1 vs. NCBI_GenBank
Match: gi|802562814|ref|XP_012066569.1| (pentatricopeptide repeat-containing protein At1g63330 [Jatropha curcas]) HSP 1 Score: 75.485 bits (184), Expect = 1.084e-10 Identity = 118/534 (22.10%), Postives = 195/534 (36.52%), Query Frame = 0 Query: 2 DLRTVNIMAGYLARTKGFDEAQAMVEDVRRGAPGIEPRAVTHNILLDALLKARRVEEALEYFYAVAAEASSAGPGPDKSARRG-SRGERGRQGGGWRKEREKEVALVDSTTYDILLNGLVQNGRVSTAGAVHTMMRKAQFPPTMYTYAALIRLQKSALDVYRLWGQARADYPRL-------SLPFLNLLVYELGQSHNDLPGALAAFRAILRMGRQPNTISFNSLFSALMKDANACLPRWTPPLEEGGEEGPDKTGERLSHGQGYLLEDEYPAVSALSSEGRGLISLLESLQDRTLLEASLVVLRSMYHEGKRPSSSKETREGSETGNENMLQGY----ELGQGRASSPPSVTASARPNARTFTILMAG------INRADLGPRGTALCIALYHEAQEDGVSPNGIMCHALLR--SFGPDAKGALGFFKRELRVSLKALDAVDRAEEAARGLEDETEDGREIDGVFTSGGNLSLAYMALLYICGVSGRSDLALQLLYAMQRDGLPTDQNVWEAFEAGKTAPGAAATATSSMGQL 515 D+ T N++ L + K + A +++ R G EP V++N ++D+L K R V EALE F + +E S S G R ++ + K D T+ IL++GL + GRVS A + +M + P + TY++LI ++ W +A + +L N+LV L + + AL + +++ G +P+ +++NSL L EE + E L L V L EGR + + ++ M G +P +++ GY ++ Q R ++ PN T+ I++ IN A + L E G+ P+ + ++L+ S A+ A FFK +L S + DAV IDG F L D+AL L + MQ+ L D V+ G G A + +L Sbjct: 166 DVYTYNVIVNALCKIKKTNVAFGILK--RMVEEGCEPDVVSYNAIIDSLCKDRLVTEALELFLKMKSEGISPCIVTYNSLINGLCMSSRLKEAFLLLNKMLKANITPDLITFSILVDGLCKEGRVSKAHGIVKLMLQRGIKPDVVTYSSLIYCLCNS----GRWEEASVQLNEMLEANIAPNLITFNILVDGLCK-EGRVAKALGIVKCMIQRGIKPDVVTYNSLIYGLCNSGRL-------------EEASVQLNEMLEANIAPNLFTFNILVDGLCKEGR--------------VAKAHATVKWMIQRGIKPDV---------VTYNSLMNGYCLLNKMDQAREIFDMMLSKGCTPNVVTYNIMIDCYCRRKRINEA----------MRLLDEMPRKGLIPDHVTYNSLIHGLSNAKSAQAAYKFFK-DLCASGHSPDAVTH--------------NILIDG-FCKHHCL-----------------DVALSLFHEMQKSSLKPDIIVYNILIVGMFNAGKVKDAKELVSRL 613
BLAST of EWM24264.1 vs. NCBI_GenBank
Match: gi|743841978|ref|XP_010937677.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Elaeis guineensis] >gi|743841982|ref|XP_010937679.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Elaeis guineensis] >gi|743841986|ref|XP_010937680.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Elaeis guineensis]) HSP 1 Score: 75.0998 bits (183), Expect = 1.682e-10 Identity = 125/562 (22.24%), Postives = 220/562 (39.15%), Query Frame = 0 Query: 7 NIMAGYLARTKGFDEAQAMVEDVRRGAPGIEPRAVTHNILLDALLKARRVEEALEYFYAVAAEASSAGPGPDKSARRG--SRGERGRQGGGWRKEREKEVALVDSTTYDILLNGLVQNGRVSTAGAVHTMMRKAQFPPTMYTYAALI---RLQKSALDVYRLWGQARADYPRLSLPFLNLLVYELGQSHNDLPGALAAFRAILRMGRQPNTISFNSLFSALMKDANACLPRWTPPLEEGGEEGPDKTGERLSHGQGYLLEDEYPAVSALSSEGR--GLISLLESLQDRTL---LEASLVVLRSMYHEGKRPSSSKETREGSETGNE-------NMLQGY-ELGQ--------GRASSPPSVTASARPNARTFTILMAGINRADLGPRGTALCIALYHEAQEDGVSPNGIMCHALLRSFGPDAKG--ALGFFKRELR----------VSLKALDAVDRAEEAARGLEDETEDGREIDGV--------FTSGGNL------------------SLAYMALLYICGVSGRSDLALQLLYAMQRDGLPTDQNVWEAFEAGKTAPGA 504 N + L ++ FDEA+++ ++ G + P VT++IL+D+L K ++E+AL F + E P + G G + +R+ +K VA ++ T+ L+NG + G + A +H M K P +T+ ALI K + RL+ + + N+++ E S D A + A++ G QP++ ++ SL S L C+ T + + E D GE+L Q ++ L EGR + + + +R L L V++ M + + + RE + G + N++ Y LG GR S V PN T+T+L+ G+ +A + LC E PN + L F + A+ K ++ + ++ + R ++A L D ++G D + + G+L +LAY L++ C +SG AL L Y M R+ + + + A G + G Sbjct: 368 NALINSLCKSGKFDEAESLF--LKMGEKDLSPNDVTYSILIDSLCKRGKLEDALLLFDKMREEGLRVTVYPYNALINGHCKLGNSSKAEVLYREMTDKGVA-PNAVTFTALINGYCKEGSLDAALKLHHQMPKKGVPWNTHTFTALIGGFCRAKMMTEAARLFNEMFEVNVTPNEVTYNVMI-EGYCSVGDTGRAFQFYDAMMEEGLQPDSYTYRSLISGL------CM---TNKVSKAKEFIDDLHGEQLVLNQMSF----SSLLNGLCKEGRVHEAYCIWKEMVERGLEMDLVCYSVLVYGMLKQNNQVRAYSLLREMVDKGIKPDDVLYTNIIDAYIRLGNITEALRFWGRMSGEGCV-----PNVVTYTVLIDGLCKAGFFRKAELLC----REMLVSSFLPNRVTYGCFLDHFAREGNMDEAMVLHKVMVKGLLANTVTYNILIRGFCKIGRTQDAISLLADMVDNGIFPDCISYSTLIDAYCRKGDLHEAFKLWDDMLNRGLKPDALAYNFLIHGCILSGEVTKALGLYYDMLRNTVKPNWATYHALFHGTFSMGV 903
BLAST of EWM24264.1 vs. NCBI_GenBank
Match: gi|1210527284|dbj|GAX13919.1| (hypothetical protein FisN_5Lh180 [Fistulifera solaris]) HSP 1 Score: 74.7146 bits (182), Expect = 2.203e-10 Identity = 55/209 (26.32%), Postives = 98/209 (46.89%), Query Frame = 0 Query: 346 RPNARTFTILMAGINRADLGPRGTALCIALYHEAQEDGVSPNGIMCHALLRSFGPDAKGALGFFKRELRVSLKALDAVDRAEEAARGLEDETEDGREIDGVFTS-GGNLSLAYMALLYICGVSGRSDLALQLLYAMQRDGLPTDQNVWEAFEAGKTAPGAAATATSSMGQLWM-------GPYESLLRTETIGLGWE----TGVRRVRI 542 +P+++TF ++ + + G ++ + L+ +A G++ +G +A+ R FG + A+ +K E+R + L T G+ D + NL AY LLY+CG + RSD+AL+++YAM+++GL + + +GK + + Q W+ PYESLL E + +G +RVRI Sbjct: 635 KPDSQTFCLVASTLQ---YGKTDASVAVELFRQATRVGITADGRFINAIFRCFGDNIDAAISAWKGEIR---------------SFCLSHGTHGGKNSDSQRRARDKNLFAAYNGLLYVCGRARRSDIALRVVYAMKKEGLDPSELSLNCYNSGKRKR----SFNNEFSQSWLTKRLKIADPYESLLYVECMKYDKNDRRRSGEKRVRI 821
BLAST of EWM24264.1 vs. NCBI_GenBank
Match: gi|298712113|emb|CBJ32994.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 73.1738 bits (178), Expect = 3.208e-10 Identity = 49/137 (35.77%), Postives = 73/137 (53.28%), Query Frame = 0 Query: 358 GINRADLGPR---GTALCIALYHEAQEDGVSPNGIMCHALLRSFGPDAKGALGFFKRELRVSL----KALDAVD--RAEEAARGLEDETEDGREIDGVFTSGGNLSLAYMALLYICGVSGRSDLALQLLYAMQRDGL 485 GI AD G T LC LY EA E + NG +C+A+L FG D GA+ F++R +R +L DAV+ A++ R E+ +D L AY LLY+CG + R D AL++++A+++DG+ Sbjct: 211 GIRAADGGAEQVSSTELCTQLYMEATERDIHLNGKICNAVLVGFGADLTGAISFWRRCVRPALVQDSDERDAVNGISAQQTRRPQENLKKD-------------LFSAYCGLLYVCGRAQRPDAALKVVFALKKDGI 334
BLAST of EWM24264.1 vs. NCBI_GenBank
Match: gi|223999649|ref|XP_002289497.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974705|gb|EED93034.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 71.633 bits (174), Expect = 2.116e-9 Identity = 43/154 (27.92%), Postives = 78/154 (50.65%), Query Frame = 0 Query: 346 RPNARTFTILMAGINRADLGPRGTALCIALYHEAQEDGVSPNGIMCHALLRSFGPDAKGALGFFKRELRVSLKALDAVDRAEEAARGLEDETEDGREIDGVFTSGGNLSLAYMALLYICGVSGRSDLALQLLYAMQRDGLPTDQNVWEAFEAGK 499 +PN++T+ I+ + ++ + + + LY +A +D V +G +ALLR FG D GAL +K + AA G+++ +G + + NL AY L+++CG + R D+AL++ YAM++ G+ + + AGK Sbjct: 593 KPNSQTYCIVASALSGSGTSESNSGFALQLYRKAMDDRVPADGRFLNALLRCFGDDINGALDLWKTGMGA-------------AAAGVKNNDIEGSK-QSMMKRSANLIAAYNGLMHVCGRAVRPDIALRIAYAMKKAGVEPTEVSLNCYYAGK 732
BLAST of EWM24264.1 vs. NCBI_GenBank
Match: gi|219118877|ref|XP_002180205.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408462|gb|EEC48396.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 70.0922 bits (170), Expect = 5.795e-9 Identity = 58/207 (28.02%), Postives = 92/207 (44.44%), Query Frame = 0 Query: 347 PNARTFTILMAGINRADLGPRGTALCIALYHEAQEDGVSPNGIMCHALLRSFGPDAKGALGFFKRELRVSLKALDAVDRAEEAARGLEDETEDGREIDGVFTSGGNLSLAYMALLYICGVSGRSDLALQLLYAMQRDGLPTDQNVWEAFEAGKTA-----PGAAATATSSMGQL--WMGPYESLLRTETIGLGWE----TGVRRVRI 542 P ++T+ I + G L+ A G+S +G +A+LR FG + AL F+K + R + ++ R + +R + G NL AY LLY+CG + R D+AL+L+YAM ++GL D+ +++GK A S+ Q + YE+LL E + TG +RVRI Sbjct: 629 PTSQTYCIAAKALQ---YGSSNAITAEQLFRNATLAGISADGRFVNAVLRCFGGNVDAALKFWKDDCRGACIQHESRARFKSPSR----------------SKGKNLIAAYNGLLYVCGRALRPDVALRLVYAMSKEGLEPDELSLNCYKSGKKIQQNMPANTRAKLAQSLKQTLNLVDSYEALLYIECMKYDQNDRRRTGEKRVRI 816 The following BLAST results are available for this feature:
BLAST of EWM24264.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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