rna6466, rna6466 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6466
Unique Name	rna6466
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2078
Alignment location	CM002468.1:570305..572337 +

Link to JBrowse

Properties


Property Name	Value
Product	Prohibitin
Orig transcript id	gnl\|cribi\|Naga_100020g11.5411.mrna
Orig protein id	gnl\|cribi\|Naga_100020g11.5411
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:570305..572337 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g11	gene6248	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6466	rna6466-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24278.1	cds6450	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:570305..572337+
coding sequence from alignment at CM002468.1:570305..572337+

mRNA sequence

>rna6466 ID=rna6466|Name=rna6466|organism=Nannochloropsis gaditana|type=mRNA|length=2078bp
AAAGAATTTTTCCTCGTTCGCCGGCTTCCTAGCCTCTCCATTACACTCGC
CCTCCCACAAGTCCTGGGATGGCCACGAGAGAAGCGTCAGGGAACGGTAG
ACGCTTGAAAAGCTTTTTGTGTCTCATATAGATGTGTTCACTTCTACACA
TCCCCTCCCACTCGCCGTAGAAGCTGACGGAGTGGAAGACACAGAGAGGT
GGTGTGCTGTGTAGCCGGGAGGTGAGGGATGCTGCGGCAGGGCTTGACCA
AGTTGCGGCACTCTCATCATGCCGGTAAGAGAGTACAGCAGGTTCAGGAA
AAGTACAAGGGGCAGGTGACGTCAACGCTCCTGTCGCATCAAAAAGGAGG
CACTTGGGAAGGTATTCATGCGTCTAGAGGAGGGTGCCGGGCGATGAGTG
GTGGATTTTTCGACCAACTTCGACAATCACTTAAGAAGGAGGTGGAACAG
AATAAAGAGTTCAAGGAAAGCCTGTCAAAGCTAAGGAAGGAGACGGGAGA
CTTGACGGGAAAAGCTCAGGAGAACTCCTCCAAGTTGGCGGAAAGCATGC
ACAAGTTGTCATCGACTGTATCCAGCCGCCTGAATGAGACAAGAGAAAGT
TTGAGCAAGAACTCCCAGGTACTCATGTTGCAGTTAAAAGAGAAAGTAGG
GGCATCGCAGGCGGAGGAAAGCGAAAAGAAAGGTGAGGGGGCAAGGAGAG
ATTCCCCCTCTCCTGTCAAGTCGCACGCGGAAGTCTCTCACAAGGAAAGC
CCGACTTCCTCCAAGAGCGCATCAAGTCATGCTGACGGTCATCATGAGTC
GCCCGCACGGGAGGGAGGACGGAGAAGAACCCTCGAGGAGGCCAGCCAGG
CCGCTGAAGAAGACCCTGTGAAAGCGTCGGGCGCCGAGGACTCCGCAGGG
CGCAAGGAAGAAGCATCAAGGGACGAGACGGAGGCCTCATCCACCTCTTC
CTCCAGTGGAGGGACGGGTGCTGGCAGTGGTGCGTCTGGGGGGAAGGAGA
ATGTGTTTACAAGGTGGTTGGCGGGACGCCCTCCTCGGGAGTCCGTCCGA
GTCTTTGTTCGGGACTTCCAGGTGGGCCTGAGGGAGGCGTTTGCGGACCT
GTTTGGGATGCGGGAAAAGAGCACCGGTATGAGGAAGCACATTTATCAAC
AAAGAGCTTCGGAAGCGGATGGGGAAGCCGGGAAGCAAGAGGGAGAGGAG
GGGGAGAAGGGGGAGGCGGGGGAGGAGAAAAAAAAGAACGCCGGGGGCGC
CTTGGTGGTGGTGAAGCAGCAACAGAAAACCTGGGAGCGGCTAGCTGAGC
AATTGCGAGACGCGCCTATCATTCAAGAGATTTTAAAAGCGGGCACGAAG
CTGGCGGACACAGAGCTCGGTCGGCAGGCGGGAAAGCTGAGGGGCAAGCT
CCAGGACCGGGTGGAAGACGCGCGGGAGCTGTGGGAGACGAGTCAGAACC
CGATCGTGTACAAGCTCTCCTCCATGTGGGACGACCTGACCTCGGAGACG
GAGCTGGGCATTGCCTTGCGGGAGATCCGGCGAGCGGACCCGGACTTCGT
GGTGGAGGACTGGGTGAACACGCTGTCCGAGTCCTTCCTGCCCCTCTTCT
TCAAGGCCTACCTGAAGGGGGACCTGAAGACGCTCAAGCCCTACCTCTCG
GAGGGGATGTACAGGCAGATGGCGGAGGAATTTCGTCTCCGCAAGGCCGA
GGGCCTGGCGCTGGACCCGCACGTGCTCGAGATCAGCAACGCCGAGATCG
TACAGGCCAAGCTCCACGACCACCAGCCCGTCCTCGTCCTGGGGACGCTC
ATCCAGCACATCAACTGTGTGCGGAATCGGGAAGGGGCGATCGTCGAGGG
GAAGGAAGATGAGGTACGAGCCTCCTTTTACCTGCTGCTGTTTGTGCGGG
AGTACGACGAGAAGGAGGGGGCTTTGCAGTGGAAGATCCAGGAGCGGTAC
CTGGGCTTCTCCCAGCCCTTCATTTAGAGTGAGGAGGGGCGACAGAGCCA
TCGAGCCGCTTCGAAGCAAAGTATGATTTGAGACGGTTGCGACGAACGTA
TTGCGTTGTTATTTTACTGCATTTGTGA

protein sequence of rna6466

>rna6466-protein ID=rna6466-protein|Name=rna6466|organism=Nannochloropsis gaditana|type=polypeptide|length=276bp
MEALLGRVAKLGAGVAGAAFVGNNFLFNVEGGHRAVVFDRFKGVLPKPLA
EGTSIVIPVLQSAFLFDVRSKPRVINSVTGTKDLQHVNISLRVLSRPVEQ
MLPEIFSKIGQDFDERVLPGVGNEVLKAVVAQYNAEELLSKREQISDQIR
VNLIKRAREFHLILDDVSITHLTFSKEFTKAIEQKQVAEQDAERQMYIVQ
RADQERKAVVIRAEGEAEAAMKISKAVADFGTALIEIRRIDAARDIADIL
SKSRNITYLPGGQNSGLLLGLTAGQG

mRNA from alignment at CM002468.1:570305..572337+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6466 ID=rna6466|Name=rna6466|organism=Nannochloropsis gaditana|type=mRNA|length=2033bp|location=Sequence derived from alignment at CM002468.1:570305..572337+ (Nannochloropsis gaditana)
CATGAATACCTTCCCAAGTGCCTCCTTTTTGATGCGACAGGAGCGTTGAC
GTCACCTGCCCCTTGTACTTTTCCTGAACCTGCTGTACTCTCTTACCTGA
GGCGCAATGATATGGTCACAACCAGGGATAAATATATTTGGTGTGAAGGT
ACATAATACCGGCCTTAACTTTGCTTACCGGCATGATGAGAGTGCCGCAA
CTTGGTCAAGCCCTGCCGCAGCATCCCTCACCTCCCGGCTACACAGCACA
CCACCTCTCTGTGTCTTCCACTCCGTCAGCTTCTACggcgagtgggaggg
gatGTGTAGAAGTGAACACATCTATATGAGACACAAAAAGCTTTTCAAGC
GTCTACCGTTCCCTGACGCTTCTCTCGTGGCCATCCCAGGACTTGTGGGA
GGGCGAGTGTAATGGAGAGGCTAGGAAGCCGGCGAACGAGGAAAAATTCT
TTCCACAGGCATTCAGGCCTTTCAATCGCACAACTTGTTGCATCACAAGC
AGAATATCGCGCAGTCTTTTATCCATTGATGGTGTTTTAACGGTGTTGAC
TTATATTCTTCGAATACCGCAGGTAGCAACGGGTGTTTGCACCGTCGGAG
CACTACGCTTCGGAAGATACTGAGGTAGTCCGGGAAGTAATCAGTGACCT
CCCCGTACACAAGGTAAGGACAATATGTTTTCTCGCGTGTGCATGCTTCA
TTTAACATAGTGACACAATTATGGCATGAAGCTTAGGGAAGCTTAGGGTA
GTGGAAAGGAAGACTGTGCAGATAAAGATGCCGTTCGACATGCATCATCA
TCATGACTCATTACTTtccatccatctccttctaTCCATTTGGCCGGGTG
AAAGTCCAGGGAAAAGTGAGAGATGGAGGCATTACTGGGCAGAGTTGCAA
AGTTAGGTGCCGGCGTGGCAGGGGCCGCATTCGTAGGAAACAACTTTTTG
TTCAACGGTAAGCGGGCCTGGTCACTATTTCCTCAGACGATTGCAGACGC
CTGATGTCTAAGATCAAGCTGTAAGGCCGACACGCATGTTCTACAAGTAT
GACAAGGCTCAAGAGATAGATAATGTTGAACTTAATCAACTCCATCATTT
CCCCCCATGGTAAAAACTCACCACTCCCATGGCTTAGTGGAAGGCGGGCA
CCGCGCTGTAGTGTTCGACCGCTTCAAGGGCGTGCTTCCGAAGCCTCTGG
CCGAAGGAACAAGCATCGTCATCCCCGTACTGCAATCGGCTTTCTTGTTT
GACGTGCGCTCCAAGCCTCGGGTCATAAATTCCGTGACGGGCACTAAGGA
TCTGCAGCACGTAAACATCTCCCTGCGGGTCCTCTCCCGGCCTGTGGAAC
AGATGCTTCCCGAGATCTTTTCAAAGATCGGTCAAGACTTCGATGAGCGA
GTTTTGCCCGGTGTGGGGAATGAGGTTttgaaggcggtggtggcccAGTA
CAAcgcggaggagctgctgaGCAAGCGCGAGCAAATCTCGGATCAGATCA
GAGTCAACCTAATCAAGCGCGCCAGGGAGTTCCACCTCATCCTAGATGAC
GTCTCCATCACCCACTTGACCTTCAGCAAGGAGTTCACCAAGGCCATCGA
GCAGAAGCAGGTGGCGGAGCAGGACGCAGAGAGGCAAATGTACATAGTGC
AGCGGGCAGATCAGGAACGTAAGGCTGTGGTCATCCGtgcagagggcgag
gcggaggcggcgatgaAGATCTCCAAAGCCGTGGCAGACTTCGGGACTGC
CTTGATCGAGATTCGTCGCATCGACGCGGCCCGGGACATTGCGGACATCT
TGAGCAAGAGTCGCAACATCACTTACCTGCCGGGGGGGCAGAATTCGGGC
TTGCTGCTGGGCTTGACGGCCGGACAGGGCTAGACTAACGGTTTTGAGAC
AAGGAGAAtaggatggaggggatcgGCGGCTTGTGAAGAAAGGAATCTTT
GCATGTGCTCAGGACGGAGAGAAGCGGGGGGTTGAGGCAGACACCATCGT
ACTAAAAGCAAGCAGAACGCCCCGAGATAAGCG

Coding sequence (CDS) from alignment at CM002468.1:570305..572337+

>rna6466 ID=rna6466|Name=rna6466|organism=Nannochloropsis gaditana|type=CDS|length=1662bp|location=Sequence derived from alignment at CM002468.1:570305..572337+ (Nannochloropsis gaditana)
ATGGAGGCATTACTGGGCAGAGTTGCAAAGTTAGGTGCCGGCGTGGCAGG
GGCCGCATTCGTAGGAAACAACTTTTTGTTCAACGTGGAAGGCGGGCACC
GCGCTGTAGTGTTCGACCGCTTCAAGGGCGTGCTTCCGAAGCCTCTGGCC
GAAGGAACAAGCATCGTCATCCCCGTACTGCAATCGGCTTTCTTGTTTGA
CGTGCGCTCCAAGCCTCGGGTCATAAATTCCGTGACGGGCACTAAGGATC
TGCAGCACGTAAACATCTCCCTGCGGGTCCTCTCCCGGCCTGTGGAACAG
ATGCTTCCCGAGATCTTTTCAAAGATCGGTCAAGACTTCGATGAGCGAGT
TTTGCCCGGTGTGGGGAATGAGGTTttgaaggcggtggtggcccAGTACA
AcgcggaggagctgctgaGCAAGCGCGAGCAAATCTCGGATCAGATCAGA
GTCAACCTAATCAAGCGCGCCAGGGAGTTCCACCTCATCCTAGATGACGT
CTCCATCACCCACTTGACCTTCAGCAAGGAGTTCACCAAGGCCATCGAGC
AGAAGCAGGTGGCGGAGCAGGACGCAGAGAGGCAAATGTACATAGTGCAG
CGGGCAGATCAGGAACGTAAGGCTGTGGTCATCCGtgcagagggcgaggc
ggaggcggcgatgaAGATCTCCAAAGCCGTGGCAGACTTCGGGACTGCCT
TGATCGAGATTCGTCGCATCGACGCGGCCCGGGACATTGCGGACATCTTG
AGCAAGAGTCGCAACATCACTTACCTGCCGGGGGGGCAGAATTCGGGCTT
GCTGCTGGGCTTGACGGCCGGACAGGGCTAGATGGAGGCATTACTGGGCA
GAGTTGCAAAGTTAGGTGCCGGCGTGGCAGGGGCCGCATTCGTAGGAAAC
AACTTTTTGTTCAACGTGGAAGGCGGGCACCGCGCTGTAGTGTTCGACCG
CTTCAAGGGCGTGCTTCCGAAGCCTCTGGCCGAAGGAACAAGCATCGTCA
TCCCCGTACTGCAATCGGCTTTCTTGTTTGACGTGCGCTCCAAGCCTCGG
GTCATAAATTCCGTGACGGGCACTAAGGATCTGCAGCACGTAAACATCTC
CCTGCGGGTCCTCTCCCGGCCTGTGGAACAGATGCTTCCCGAGATCTTTT
CAAAGATCGGTCAAGACTTCGATGAGCGAGTTTTGCCCGGTGTGGGGAAT
GAGGTTttgaaggcggtggtggcccAGTACAAcgcggaggagctgctgaG
CAAGCGCGAGCAAATCTCGGATCAGATCAGAGTCAACCTAATCAAGCGCG
CCAGGGAGTTCCACCTCATCCTAGATGACGTCTCCATCACCCACTTGACC
TTCAGCAAGGAGTTCACCAAGGCCATCGAGCAGAAGCAGGTGGCGGAGCA
GGACGCAGAGAGGCAAATGTACATAGTGCAGCGGGCAGATCAGGAACGTA
AGGCTGTGGTCATCCGtgcagagggcgaggcggaggcggcgatgaAGATC
TCCAAAGCCGTGGCAGACTTCGGGACTGCCTTGATCGAGATTCGTCGCAT
CGACGCGGCCCGGGACATTGCGGACATCTTGAGCAAGAGTCGCAACATCA
CTTACCTGCCGGGGGGGCAGAATTCGGGCTTGCTGCTGGGCTTGACGGCC
GGACAGGGCTAG

Synonyms

Publications