rna6465, rna6465 (mRNA) Nannochloropsis gaditana

Overview
Namerna6465
Unique Namerna6465
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1551
Alignment locationCM002468.1:568597..570756 -

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Properties
Property NameValue
ProductMembrane transporter, Tim44-related/Ribosomal protein L45
Orig transcript idgnl|cribi|Naga_100020g12.5366.mrna
Orig protein idgnl|cribi|Naga_100020g12.5366
GeneTIM44
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:568597..570756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TIM44gene6247Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6465rna6465-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24233.1cds6449Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6465 ID=rna6465|Name=rna6465|organism=Nannochloropsis gaditana|type=mRNA|length=1551bp
CTGAGGACCACAGATCATGCATGCACACGGGTAGCAAGTAATGCTTTACT
TCTCTTTTGGTAATATGTAGTACATTTCCTTCAAACTAGCGTCGAAACCA
TCAGCCGCAGACGGAAATCATGCTGACAGAGCGTCAAAAGGCAGACCTGC
ATGTGGCTATCTTGGAGTACCTTCGAGACGAAGGGGACAGTCTCGCGAAG
ACAGCCGAGCTATTCGCCCTGGAGACCGGCCTGGAAGCAGCAGCAGTCCC
TAAATTGACAGGAACCTTGGAAAAAAAATGGTCCGCGGTCGTGCGTTTGC
AGAAAAAATTGATGGAGTTGGAAGAGCGTATGTTGGTCGCTGAGCAAGAA
TTAAAAGCATACCGCGGACACTCACACATGGGAGGCACTCGGGCACCAGC
TGCGGGCGACGACCGCAATCTCCCCCGCGCCCCCGCCATACGCTCCTTCC
TGGGCCATCGAGGGGGGGTGACGTGCTTGGCAATGCACCCGATCTTTGCC
TTACTGGTCTCGGGGAGTGATGATGCAACGATCAAGACATGGGATTTGGA
GAGCGGGGCGCACGAACTGACCCTGAAAGGGCACACCAATGGTGTCCAGG
CTGTGGTCTTCAACCGAGCGGGCACGCTACTAGCGTCCTGCTCTAGCGAT
CTCAGCATAAAACTGTGGAATTTCCAGTCCCCGAGCACCGCGCCCGAGTG
CGTACGGACACTACGGGGCCACGACCACACCATCTCGGGCCTGGCTTTTA
TTGGGCCAACGGACGCTCAGCTTGCCTCCTGCTCGAGAGACACCACAGTG
AGGCTGTGGGAGGTGAGCACGGGATTCTGCCAAAGGTCTTTAGTCGGCGC
GCACACCGATTGGGTACGCTGCATTGCCACAAGCGCGGACGGGGCGCTTC
TAGCCAGCGGGGGAAGTGACCGGCTGGTGGCGGTCTGGGCCTTGGACACG
TGCGCCCCCGTCGCCGTCCTTAGGGAGCATTCCCACGTGGTGGAGGCTGT
GGCCTTCCCGCCCCCTGGGGTCGCGGTGAAAATCGATGGCAACAAGGGGG
GCAGCACCGGCCTAGGGTCTGAGAATGGTGAGGCAAGCGCCGGCCTCCAG
AGTCAGGGATCGGCCGAGGAGGCCTACCTGGTCTCGGGCAGCCGCGACAA
GACAATCATGCTCTGGAATGCGAGGACGGGGCAGTGTCTGTTGAGACTCG
CAGACCACGAGAACTGGGTTCGTTCCGTCCGCTTCCACCCGTCGGGGCAG
TTTCTGTTAAGCGTCTCGGACGACAGGAGCCTGCGCGTGTTCGACATTGC
CAAGGCGCGCTGCATCCGCTCCCTCCCCGACGCCCACGAGCAATTCGTTT
CGGCCCTGGCGCAGCACCCGACCTTGCCCTACCTGGCCACCGGCAGCGTC
AATCGTGAAATCAAGCTGTGGGAGTGTCGGTAGCTTTCGCCAGGCTCGCC
TAGATCGAGGAGCCTATGTACAGAGGGGCAATGTGAGGCTCTTAAAGCAA
GCACACGGAGGCGTCTCACAAATGCAGTAAAATAACAACGCAATACGTTC
G
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protein sequence of rna6465

>rna6465-protein ID=rna6465-protein|Name=rna6465|organism=Nannochloropsis gaditana|type=polypeptide|length=582bp
MLRQGLTKLRHSHHAGKRVQQVQEKYKGQVTSTLLSHQKGGTWEGIHASR
GGCRAMSGGFFDQLRQSLKKEVEQNKEFKESLSKLRKETGDLTGKAQENS
SKLAESMHKLSSTVSSRLNETRESLSKNSQVLMLQLKEKVGASQAEESEK
KGEGARRDSPSPVKSHAEVSHKESPTSSKSASSHADGHHESPAREGGRRR
TLEEASQAAEEDPVKASGAEDSAGRKEEASRDETEASSTSSSSGGTGAGS
GASGGKENVFTRWLAGRPPRESVRVFVRDFQVGLREAFADLFGMREKSTG
MRKHIYQQRASEADGEAGKQEGEEGEKGEAGEEKKKNAGGALVVVKQQQK
TWERLAEQLRDAPIIQEILKAGTKLADTELGRQAGKLRGKLQDRVEDARE
LWETSQNPIVYKLSSMWDDLTSETELGIALREIRRADPDFVVEDWVNTLS
ESFLPLFFKAYLKGDLKTLKPYLSEGMYRQMAEEFRLRKAEGLALDPHVL
EISNAEIVQAKLHDHQPVLVLGTLIQHINCVRNREGAIVEGKEDEVRASF
YLLLFVREYDEKEGALQWKIQERYLGFSQPFI
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mRNA from alignment at CM002468.1:568597..570756-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6465 ID=rna6465|Name=rna6465|organism=Nannochloropsis gaditana|type=mRNA|length=2160bp|location=Sequence derived from alignment at CM002468.1:568597..570756- (Nannochloropsis gaditana)
AAAGAATTTTTCCTCGTTCGCCGGCTTCCTAGCCTCTCCATTACACTCGC CCTCCCACAAGTCCTGGGATGGCCACGAGAGAAGCGTCAGGGAACGGTAG ACGCTTGAAAAGCTTTTTGTGTCTCATATAGATGTGTTCACTTCTACACA TCCCCTCCCACTCGCCGTAGAAGCTGACGGAGTGGAAGACACAGAGAGGT GGTGTGCTGTGTAGCCGGGAGGTGAGGGATGCTGCGGCAGGGCTTGACCA AGTTGCGGCACTCTCATCATGCCGGTAAGCAAAGTTAAGGCCGGTATTAT GTACCTTCACACCAAATATATTTATCCCTGGTTGTGACCATATCATTGCG CCTCAGGTAAGAGAGTACAGCAGGTTCAGGAAAAGTACAAGGGGCAGGTG ACGTCAACGCTCCTGTCGCATCAAAAAGGAGGCACTTGGGAAGGTATTCA TGCGTCTAGAGGAGGGTGCCGGGCGATGAGTGGTGGATTTTTCGACCAAC TTCGACAATCACTTAAGAAGGAGGTGGAACAGAATAAAGAGTTCAAGGAA AGCCTGTCAAAGCTAAGGAAGGAGACGGGAGACTTGACGGGAAAAGCTCA GGAGAACTCCTCCAAGTTGGCGGAAAGCATGCACAAGTTGTCATCGACTG TATCCAGCCGCCTGAATGAGACAAGAGAAAGTTTGAGCAAGAACTCCCAG GTACTCATGTTGCAGTTAAAAGAGAAAGTAGGGGCATCGCAGGCGGAGGA AAGCGAAAAGAAAGGTGAGGGGGCAAGGAGAGATTCCCCCTCTCCTGTCA AGTCGCACGCGGAAGTCTCTCACAAGGAAAGCCCGACTTCCTCCAAGAGC GCATCAAGTCATGCTGACGGTCATCATGAGTCGCCCGCACGGGAGGGAGG ACGGAGAAGAACCCTCGAGGAGGCCAGCCAGGCCGCTGAAGAAGACCCTG TGAAAGCGTCGGGCGCCGAGGACTCCGCAGGGCGCAAGGAAGAAGCATCA AGGGACGAGACGGAGGCCTCATCCACCTCTTCCTCCAGTGGAGGGACGGG TGCTGGCAGTGGTGCGTCTGGGGGGAAGGAGAATGTGTTTACAAGGTGGT TGGCGGGACGCCCTCCTCGGGAGTCCGTCCGAGTCTTTGTTCGGGACTTC CAGGTGGGCCTGAGGGAGGCGTTTGCGGACCTGTTTGGGATGCGGGAAAA GAGCACCGGTATGAGGAAGCACATTTATCAACAAAGAGCTTCGGAAGCGG ATGGGGAAGCCGGGAAGCAAGAGGGAGAGGAGGGGGAGAAGGGGGAGGCG GGGGAGGAGAAAAAAAAGAACGCCGGGGGCGCCTTGGTGGTGGTGAAGCA GCAACAGAAAACCTGGGAGCGGCTAGCTGAGCAATTGCGAGACGCGCCTA TCATTCAAGAGATTTTAAAAGCGGGCACGAAGCTGGCGGACACAGAGCTC GGTCGGCAGGCGGGAAAGCTGAGGGGCAAGCTCCAGGACCGGGTGGAAGA CGCGCGGGAGCTGTGGGAGACGAGTCAGAACCCGATCGTGTACAAGCTCT CCTCCATGTGGGACGACCTGACCTCGGAGACGGAGCTGGGCATTGCCTTG CGGGAGATCCGGCGAGCGGACCCGGACTTCGTGGTGGAGGACTGGGTGAA CACGCTGTCCGAGTCCTTCCTGCCCCTCTTCTTCAAGGCCTACCTGAAGG GGGACCTGAAGACGCTCAAGCCCTACCTCTCGGAGGGGATGTACAGGCAG ATGGCGGAGGAATTTCGTCTCCGCAAGGCCGAGGGCCTGGCGCTGGACCC GCACGTGCTCGAGATCAGCAACGCCGAGATCGTACAGGCCAAGCTCCACG ACCACCAGCCCGTCCTCGTCCTGGGGACGCTCATCCAGCACATCAACTGT GTGCGGAATCGGGAAGGGGCGATCGTCGAGGGGAAGGAAGATGAGGTACG AGCCTCCTTTTACCTGCTGCTGTTTGTGCGGGAGTACGACGAGAAGGAGG GGGCTTTGCAGTGGAAGATCCAGGAGCGGTACCTGGGCTTCTCCCAGCCC TTCATTTAGAGTGAGGAGGGGCGACAGAGCCATCGAGCCGCTTCGAAGCA AAGTATGATTTGAGACGGTTGCGACGAACGTATTGCGTTGTTATTTTACT GCATTTGTGA
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Coding sequence (CDS) from alignment at CM002468.1:568597..570756-

>rna6465 ID=rna6465|Name=rna6465|organism=Nannochloropsis gaditana|type=CDS|length=3498bp|location=Sequence derived from alignment at CM002468.1:568597..570756- (Nannochloropsis gaditana)
GTAAGAGAGTACAGCAGGTTCAGGAAAAGTACAAGGGGCAGGTGACGTCA
ACGCTCCTGTCGCATCAAAAAGGAGGCACTTGGGAAGGTATTCATGCGTC
TAGAGGAGGGTGCCGGGCGATGAGTGGTGGATTTTTCGACCAACTTCGAC
AATCACTTAAGAAGGAGGTGGAACAGAATAAAGAGTTCAAGGAAAGCCTG
TCAAAGCTAAGGAAGGAGACGGGAGACTTGACGGGAAAAGCTCAGGAGAA
CTCCTCCAAGTTGGCGGAAAGCATGCACAAGTTGTCATCGACTGTATCCA
GCCGCCTGAATGAGACAAGAGAAAGTTTGAGCAAGAACTCCCAGGTACTC
ATGTTGCAGTTAAAAGAGAAAGTAGGGGCATCGCAGGCGGAGGAAAGCGA
AAAGAAAGGTGAGGGGGCAAGGAGAGATTCCCCCTCTCCTGTCAAGTCGC
ACGCGGAAGTCTCTCACAAGGAAAGCCCGACTTCCTCCAAGAGCGCATCA
AGTCATGCTGACGGTCATCATGAGTCGCCCGCACGGGAGGGAGGACGGAG
AAGAACCCTCGAGGAGGCCAGCCAGGCCGCTGAAGAAGACCCTGTGAAAG
CGTCGGGCGCCGAGGACTCCGCAGGGCGCAAGGAAGAAGCATCAAGGGAC
GAGACGGAGGCCTCATCCACCTCTTCCTCCAGTGGAGGGACGGGTGCTGG
CAGTGGTGCGTCTGGGGGGAAGGAGAATGTGTTTACAAGGTGGTTGGCGG
GACGCCCTCCTCGGGAGTCCGTCCGAGTCTTTGTTCGGGACTTCCAGGTG
GGCCTGAGGGAGGCGTTTGCGGACCTGTTTGGGATGCGGGAAAAGAGCAC
CGGTATGAGGAAGCACATTTATCAACAAAGAGCTTCGGAAGCGGATGGGG
AAGCCGGGAAGCAAGAGGGAGAGGAGGGGGAGAAGGGGGAGGCGGGGGAG
GAGAAAAAAAAGAACGCCGGGGGCGCCTTGGTGGTGGTGAAGCAGCAACA
GAAAACCTGGGAGCGGCTAGCTGAGCAATTGCGAGACGCGCCTATCATTC
AAGAGATTTTAAAAGCGGGCACGAAGCTGGCGGACACAGAGCTCGGTCGG
CAGGCGGGAAAGCTGAGGGGCAAGCTCCAGGACCGGGTGGAAGACGCGCG
GGAGCTGTGGGAGACGAGTCAGAACCCGATCGTGTACAAGCTCTCCTCCA
TGTGGGACGACCTGACCTCGGAGACGGAGCTGGGCATTGCCTTGCGGGAG
ATCCGGCGAGCGGACCCGGACTTCGTGGTGGAGGACTGGGTGAACACGCT
GTCCGAGTCCTTCCTGCCCCTCTTCTTCAAGGCCTACCTGAAGGGGGACC
TGAAGACGCTCAAGCCCTACCTCTCGGAGGGGATGTACAGGCAGATGGCG
GAGGAATTTCGTCTCCGCAAGGCCGAGGGCCTGGCGCTGGACCCGCACGT
GCTCGAGATCAGCAACGCCGAGATCGTACAGGCCAAGCTCCACGACCACC
AGCCCGTCCTCGTCCTGGGGACGCTCATCCAGCACATCAACTGTGTGCGG
AATCGGGAAGGGGCGATCGTCGAGGGGAAGGAAGATGAGGTACGAGCCTC
CTTTTACCTGCTGCTGTTTGTGCGGGAGTACGACGAGAAGGAGGGGGCTT
TGCAGTGGAAGATCCAGGAGCGGTACCTGGGCTTCTCCCAGCCCTTCATT
TAGATGCTGCGGCAGGGCTTGACCAAGTTGCGGCACTCTCATCATGCCGG
TAAGAGAGTACAGCAGGTTCAGGAAAAGTACAAGGGGCAGGTGACGTCAA
CGCTCCTGTCGCATCAAAAAGGAGGCACTTGGGAAGGTATTCATGCGTCT
AGAGGAGGGTGCCGGGCGATGAGTGGTGGATTTTTCGACCAACTTCGACA
ATCACTTAAGAAGGAGGTGGAACAGAATAAAGAGTTCAAGGAAAGCCTGT
CAAAGCTAAGGAAGGAGACGGGAGACTTGACGGGAAAAGCTCAGGAGAAC
TCCTCCAAGTTGGCGGAAAGCATGCACAAGTTGTCATCGACTGTATCCAG
CCGCCTGAATGAGACAAGAGAAAGTTTGAGCAAGAACTCCCAGGTACTCA
TGTTGCAGTTAAAAGAGAAAGTAGGGGCATCGCAGGCGGAGGAAAGCGAA
AAGAAAGGTGAGGGGGCAAGGAGAGATTCCCCCTCTCCTGTCAAGTCGCA
CGCGGAAGTCTCTCACAAGGAAAGCCCGACTTCCTCCAAGAGCGCATCAA
GTCATGCTGACGGTCATCATGAGTCGCCCGCACGGGAGGGAGGACGGAGA
AGAACCCTCGAGGAGGCCAGCCAGGCCGCTGAAGAAGACCCTGTGAAAGC
GTCGGGCGCCGAGGACTCCGCAGGGCGCAAGGAAGAAGCATCAAGGGACG
AGACGGAGGCCTCATCCACCTCTTCCTCCAGTGGAGGGACGGGTGCTGGC
AGTGGTGCGTCTGGGGGGAAGGAGAATGTGTTTACAAGGTGGTTGGCGGG
ACGCCCTCCTCGGGAGTCCGTCCGAGTCTTTGTTCGGGACTTCCAGGTGG
GCCTGAGGGAGGCGTTTGCGGACCTGTTTGGGATGCGGGAAAAGAGCACC
GGTATGAGGAAGCACATTTATCAACAAAGAGCTTCGGAAGCGGATGGGGA
AGCCGGGAAGCAAGAGGGAGAGGAGGGGGAGAAGGGGGAGGCGGGGGAGG
AGAAAAAAAAGAACGCCGGGGGCGCCTTGGTGGTGGTGAAGCAGCAACAG
AAAACCTGGGAGCGGCTAGCTGAGCAATTGCGAGACGCGCCTATCATTCA
AGAGATTTTAAAAGCGGGCACGAAGCTGGCGGACACAGAGCTCGGTCGGC
AGGCGGGAAAGCTGAGGGGCAAGCTCCAGGACCGGGTGGAAGACGCGCGG
GAGCTGTGGGAGACGAGTCAGAACCCGATCGTGTACAAGCTCTCCTCCAT
GTGGGACGACCTGACCTCGGAGACGGAGCTGGGCATTGCCTTGCGGGAGA
TCCGGCGAGCGGACCCGGACTTCGTGGTGGAGGACTGGGTGAACACGCTG
TCCGAGTCCTTCCTGCCCCTCTTCTTCAAGGCCTACCTGAAGGGGGACCT
GAAGACGCTCAAGCCCTACCTCTCGGAGGGGATGTACAGGCAGATGGCGG
AGGAATTTCGTCTCCGCAAGGCCGAGGGCCTGGCGCTGGACCCGCACGTG
CTCGAGATCAGCAACGCCGAGATCGTACAGGCCAAGCTCCACGACCACCA
GCCCGTCCTCGTCCTGGGGACGCTCATCCAGCACATCAACTGTGTGCGGA
ATCGGGAAGGGGCGATCGTCGAGGGGAAGGAAGATGAGGTACGAGCCTCC
TTTTACCTGCTGCTGTTTGTGCGGGAGTACGACGAGAAGGAGGGGGCTTT
GCAGTGGAAGATCCAGGAGCGGTACCTGGGCTTCTCCCAGCCCTTCATTT
AGATGCTGCGGCAGGGCTTGACCAAGTTGCGGCACTCTCATCATGCCG
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Synonyms
Publications