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Properties
| Property Name | Value |
|---|
| Product | 60s ribosomal protein l17-2 |
| Orig transcript id | gnl|cribi|Naga_100020g14.5384.mrna |
| Orig protein id | gnl|cribi|Naga_100020g14.5384 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:565585..566865 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6463 ID=rna6463|Name=rna6463|organism=Nannochloropsis gaditana|type=mRNA|length=7144bp
GACAGAAATGGCACCTCTATCTGTGCGGCTTCTCTGATTTGGAAGAGGGC
AGGAACCTTGGTGCCCGATAGACTCCATTTGCGCCGGCCAGCGGCCCGGC
GCAGCAGACGGAAAGTCTTTGGCGATTACTTTCTCAGCCCCATTGGACTA
AAATAAAATGGCTATGACCGACCATGTAATCGATCCTGTGAGCCCAGTGC
AGGAACTTTCCGAGAATAGCGTCAAGGAGTCATCGGAAGAGGACATACTC
TGCACGGTGTGCGGGGAGGGCCACAGCGAGGTCGAGAACCAAATCGTACT
CTGCGACCACTGCGATCTGAGCGTGCATCAAGGCTGCTATGGTGTAGAAG
CTATTCCCGTGGGGAAGTGGTTTTGCCGGCTCTGTGAGTACGGTATGGAC
TGTCATAAGGTCCGCTGCTCCCTCTGCGGGCACGGGGGGGGTGCCCTGAA
GCCCACCACCTCGGGGGACTGGGCCCATATACAGTGCGCGCTTTGGCTCC
CCGACGTCACTTTCACACAGCCCGACAAGCTGGAGCTGATTGACTACTCC
CGCATGGCCCCTGCGCGTCGCACCCTCAAGTGCATGATCTGTCAGGAGAA
GAAGGCGGGCCCTTGCGTCCAGTGCCCCGTAGGCAAGTGCCACATCTCCT
TTCACCCCTGGTGCCTCCTCTACAAGGAGCACCCAGACATCTACGTACCG
CCCGGGGAGTACGAGGCCTACTGCAAGAAGCATTCCCCGCCTGTGACAGT
AAGGAAGCCGCAGGTGGTCATGCGGGTCTTTGAGTTTTCGCACGGGAAGG
GAGGAAGGGGGGCCCGAGCGCCGACAGCGGACTCGGTGCAAGCAGGACCA
GGGGGCAGAGGAGGGGTGGGTCGATGTGGCGGTGGGGGGCGAGGGGGCCG
CGGAGGGAGAGGGGGACGGGGCGGATGGCGTGGGGGCGGCCGCGACGCAC
CTACGGGGCTTTCTTCCTGGCTGACGAAGGGCAGTACGGCGAGAAGAGGC
GGCAGCGGTCGAGCCAGCCCCCGGGAGTGGGGAGCAAAGAGCGTGGCATC
CGACGGGAGGGATGAGGTGCCCACTTCCGCGGGAGGAGGGGGCGGTGGCG
GTGAGGGAGGCAGGGGGAAGAACGAAAGCGAGGGAGTCCCGCTCTTCAGC
GAGTATCCCGGTCAGCACCTGAACGAGCCTTTGGACTTGGAGCACTTTTG
GAGCGCTGTAGACATGTATTTTCCAGAAAACCACCACCCTGAGGGCCTGA
GGCGCATTCAGGCGTCTATTCTTCCCGTGAAAGCGCCCGAAGACCAGGAC
GTAGTATTTCGATTTCCGCGGGTGAGGGGCTCTGGAACGAGAGGGAGGGA
CATGGCCAGGCTTCGCAGCCGGGATGAAGGAGAAGGAGCTCTTGACACGC
AGGACGAAGAGAAGGTCGTGGGGGAGGAAGAAGGTGAGGTGGCATCTGAC
GTCGGGGCGGAGGACGACGAGGGCGGTCTCTCGGAGGCTTCCTACGAGGG
GGAGGATCAGCAGCCAGCCGGCGCATTTTTGTCCAAGTTGAGAGAGCGAT
GTAGCCAGCGAGAGGGCGGCTTGGACAGCATTGAGAAAGTGATCGGCGCT
GACAGTGGTGGCTCGACGGATTTGGTCCATGGTTTCGCCGACCTGGGCTT
GCAAAGGGAACGGGCCGGCGTGGATGCCACGAGCGGCATCGGAAAGAAGG
GAGGGTTGAAAGTCGTATTTCATTCGCAAGCGAACAGTCATCAGCGCGTA
TATTGCGGCTATGTGGGTATTATCGGCAACGAGGCGAGTATGCAGTCGGA
TGAACGCTTTTGCCAAGATCTGCGACTGGAATCGATTGAGAGGGAGGAGA
ACTCTTCCCTCCCCCTCGCCGTGGCGGCGCCGTCTCCTCCTAGCTCCATG
TCCGGGACGCAGGCAGCCATAAGTATGGACGTAGAGATGCTCCAGCCGTC
CTACGTGGACCTAGAGCTCATGTCGCACCAGCAGGAGCTGTACTTTGTTG
GTAGGGCTCTCCGAGAGCGAGTCCAAAGCCTGATGGAGGGCATCGTCGCC
GACGCCGAGAAGCGGACCTTGCAGAAGGAAGTCGACGCAACCACGGAGCG
CAAGTATCTCCTGGCTCGCGTGTGGAAGTTTGTGGCGCTGGGTTTGGTCA
GGGGTCTGCGCGACCAGGAGCCTGACTTCAACAAGCACAAGGAGGAGGTC
CTCCCCGCCAGCTGGTCCCTGCCCGTCGATGGCCGGCCTCCCCCACCCGC
ACCCGAAGCACTTGCGAGGGAGGCAGCGACCGAGGATGTGGACGACAGCA
TTTGCATGGTCTGTTTTGACGGAAGCTCAACGGAGAGCAACGAGATCGTC
TTTTGCGACGGATGCGACATGGCTGCACACCAAGCCTGCTACGGGCTGCC
GGAGGTGCCCGAGGGGGACTTTTTCTGCGACAAGTGCCTGGGGCTGATGG
AGGATCCTGACCGACCCATCGCCTGCACCCTCTGCCCCGAAGTCCACGGC
GGCTTCAAGCGGACCCTCGACGGGGAGTGGGTGCACCTCGTCTGCGCGAT
GCTCTGCCCGCGCTCGCGCATTACCAACTTGATGGATATGGGCCCAGTGG
ACCTTTCGGCTCTGGCGGGTTCCGTGACGCAGGCGAGCGCAAGCTCCCCT
CTCCGGCGCCCGCCCTCTCCGCTAGTGTTGGTCCCCCCACCATCACCATC
CCCCGTCCTCGCAGAGGGGGGGAAGGCGCGGGAGTGCTTGGCCGACGGGC
GCGACGGCGGGATGGACGGGAGGAAGGAGGTGGGCCCTACAGCGCCCGCG
ACCATTGTCAATTACCCAGTGCGAGACGACAGAGGTGTACAAGAGGAGGA
AGGGGACGGGGGGAGCCCTGATCTGTCGTCGCCGAAGGAATGCCCCTCCA
GCGCAGCCACCTTAAGAGCGTCGTCCATGAACGGCACGGCGGACACGGTC
GGAAGAGAGGGGATGACCGAAAAAGTAGGTGGTATCGTCACAGCTGCTGC
CGCTGCCAGAGCTATTGCTCCCACCTCTACGAGTGAAACAGCCGTGGCGT
CCTCACCCTCAGAAGCTGGAAAGAAAGACGCTGCTGCTCTCACCCCGTCA
TCAGGTGCCCGCCGATTAACACGAGGCAGCCCCTCGTCGGGACGGAGGGT
CCCGCGGTCAGACAGTAGCAGCGAGGACCTACTTCCAGAGCGGCTGCAGG
CGACCCTCGAAGGTGCGATACCAGAGGTCTTAACGGCGGCACAATTGGTA
CAGGAGGGCGACGCGACCAGAGCGGATCCTGAGGGCAAGGGGGAGGAAAG
GGGCATGCAGGTTTTGGACTCGAAGGCCGGTGGAGCGGCATTGGGAGCAG
GATCGCAAGCCGCAGCCGAAACGTCGAAGGCGGGAATCGTGCCAGCGGAA
GTCGGTTCCACCGCAGCCGTGAAATGTTCTGACAAGCCCCTCGCCCCCTC
GCCCACGTATGCGCTCGCTCCCACTCCTCAGGTTCGCGCCGATCAGTGCG
TCGTCTGCAGCCAAAGCCGCGGGCACACCTTGAAGTGTTGCCAGGAGGGG
TGTGAGGCAAGATTCCACCTTCTCTGTGCATGGTTTCGGGGAGCGTACCT
TTCGGTGGAGCTGAAGGATCGAGGCTTTGGAGGAGGCGGGGAGACCGGAG
AGGAGTACCCAGCCGGCCTCCACGTCAGGGCTTACTGCCTCCAGCATTGT
CCGACGGGGGCGCGGAACCGGCTGGAGCAGGTCCAACTTCGCGCCAAATA
CCGCCTGCGGGAGGCCGACCGACACGGTCCCAAGCGCCATCACGCGCACA
AGAAGCGGTCTTACTCCTACGGCGGAATGCAGGCGGAAAAGCGACTGGGG
GGCCAGCAGGCTTTAAGTCCGGATAGTTATCACAGGTATGCATGTGCGAT
TTGCATGGAGCCCAAAGCGAAGCTCGTGGAGCCAGCAGAGACGCTACCAC
CACCATCGACTGTGCTTCAGAGTAGGAACGAGCAAGACAGTAGCAGCGGA
CAGAGCGGAAGCGCGGCAATCATGAAGGAGGACAGCGACATGCGTTCCGC
TGGGCAAATTGCCGAGTCTAATCAAGGGGCAGGGGGTGCAGTGATGGTGT
GCAGCAGGTGCGAAATGCCTGTCCACATTTCCTGTCTTAGCTTTTTCCAG
GACCCTTCGACAGCATCCTCACCCGCCGCTGAGTGGATATGCCAGACTTG
TGTCGGTGACGAGCAGGACCTGGGGAGCGGGGGTTCGTGCGCGTTGTGTC
CTCGGCGTGGTGGGTTGTTGGTGCCCACAAATGACAGAAACATACGGTGG
GTGCACGCATTTTGCGCTGAACACAACGGGCCGCTCGTCTTCAAAGCCGG
CCACAGTCCCGTCTTGCCCCAGTTGGCCGCCGTCGACGTGCGCAACGTGG
GAAAGGAGGCAAAGAAGGCCTTCAAGTGCGGGATTTGTCTGCGGAAAAAT
GCGGGCCTTTGCTTGCGCTGCGCCCACCCCTCCTGTTCAGTCCAGTTCCA
TCCGCTTTGTGCAAAGCTGGAAGGGTGGTACTTTCAGGCCGAGGGTCGAG
GAGAGCTCCCCGTGGTTTTGTGTCCGGGGCATGTTCCCATTGGCGTCTAC
CGCGGATTGAATGGGCAGTATTTCGACATGCAAGCGACCGCGAACCTCAG
GAAGAACCTGGACCGGGCCCGACTGATTGTAGACTTGGTCCGGAAGCGCG
AGAAGTTGAAAAAGGCGCTCTGGAGGGTCGATTGCGACTTGTCAGAGCTC
CGGCTAGGCAAGTTGCGAGTTCTATTGGAGGGAAGGATTTTGGAGATGCA
GAATGGCCGAAGACTGACGGAGGAACGCCTCGCCAGCTACCGGCGGGATC
TCGATGCTTTGCTGGCGCGCCCTCTGTGGGCTCGCGAAGCGGGCGAAGAG
GCCTTACTGGCCAAAAAGGCGGACGGCTTGGACAACTCAGCGGCAGCTGC
GGCAGGGTCAACTGCAGCGACGGTAGTCATGATGGAGGATGTAAAGCCTG
CGGCTCACCAAAAACCTTCAGGCGGGGAAGTCCGGTGTGTGGATGTGGAT
ATACATAAGGAGTCTGGAGCGATACCGGATCGACCCCTTCGTGGCGATTG
GAACGCGTCTCATAGCGCATCGGATGCCGTAAATGATTTTGGTGAGGTTA
AGGGCGGGGCGATGGGTACGGATGAGCCTGCTAAAAGAAGGGGCAGAGGA
GGAGGATTTAAAGGAGGAAAACCCAGCTCAGAAGCGCTCGAGAGTACTCT
CACGAAAACCGCAGTGACGCATAGAAAACGACAGGAGGATAATGTTGCTC
CCCTTGCAGCCGTTGATGCTTTGGTCGTCGAGAATGCCGCACCGGCGCAC
GCAGATGTCATTTACGATCCTGGACGCCCGTCGAAGAGGGGCAGGAGACG
GATGACGCAAAGCGACACGGGGGAAACCTGCTCGGTGTCGGCACAACACT
TGGAACTCATAAAAGACTATGCTCCTGAGACGTCGAACATGACAGGGAAG
AGGAAAAAGGGGGAAGAAGAGGAGGAAGAAGGTCTTCTTGCCCGAGATCG
CTTCGAAGCTTTGACAGAAGGGAAGGGTTTGGCGGCCGCTACGTTTCTTG
CTGAGAACGGAAGCCCGCTGTGGTCGGCAGCGGGGAAAAGGATCAGTGCT
TGCGGGCGCGTCGACTTCGAGAAGACTTTGGCTTTGCTAATAGACCCAGA
GGACCTCAGACGTCGCGAAAAGGGAAGCCAAGCCATGGCGCCAGGGTCAT
TCAAAAGCAAGGCCAGGATCACTTTGGATAGGCAGCTGATGGAGCTGGTG
TCTGCCTTAGAGGACTGCTCCGATGGGGACGGGCGGGACGTGAGTGCCAC
GTTCGAGATTGCGCCGGACCCGGAAGCGTATCCTGATTATTACGACGCCG
TTTTACACCCCATGGATCTGGAGACTATAAGGCATCGCGTACAGACCCTC
TTTTACGTGTCCCTAGCTGACTTCTGCAAGGACGTGCACCAGCTTGTTCG
AAATGCCAAGAAGTTCAACGCCCCGCGGTCTCGGGCCTATATTGACGCAG
ATTTCTTGAAATGTTTTTTCGAGCAGAAAAAGGAGGAAGTCTTGCAGAAA
GAGAAAGAATATCGTACCCTTGTGCAAGAGGAAGAGGAAGGGCAACAAGG
AAAGAGCGATGGGTTCGGGCGGGATGGAGGCGTGCGGGCGAAGCGACGGC
GTTTTGCCGGCAAGGATAGCGCCGTCTGTGGGTATGATTTGAACAGGAAC
AGCGGCATAAACGATATTGACACAAGAGCTGGAAAAGGGAAACAGAAACT
GAAGCGGAAGGGAGGCGCCGGACCCACACCACGATTCACGCGCCACTCCC
ACAAAAACAAGAAAGTATGCCTTGTCTGTGCTGCCGGTAAGGATGACAGC
ATGCCAGTGGTGGCTCAAGGCCAGTTCCACACTTGCGCGGAGTGCGTGCG
CGCGCGACCGGAGGCGTTCGTGGGCCGGTACGTGGACGTGCTCTGGCCCG
ATGACGACACCTGGTATGCCGGTATGGTCAAGGACTTTGACCGAGCAAGC
GGACAGCACCGCATTTTGTACGACGACGGAGAGTGGGAGTTTGTCTATCT
TCACGAGCAGGAAATGTCTTTTCCAGAACCCGTGGAGCTACGGCCGGGGG
ACTTGGAATTAAGCCTGAGGTCGCCAGAGCCGGCGATCCCGCTGAAGGAG
GCGAGTTCGGAAACTAGGAATGGTGGTAGGAAGCTGTCGCCTGTGAGTTC
CCAGACCGGCCTGGGAAAGGCTCAGGTCGGTCTACAGGGAAGTGATGGGA
AAGCAGATGCTTCAGGCGGAATCTGTGAAAACACGAATGCCGCGAGGGGA
TTGGCTGGAGCTGGCGTTGAGGGCCCGGTGGGGAAGATGGACGACGAGGA
GACGGAGGACGAAGAGAAGCGCGTCCAGAAAAAAGCATAGAAACTCGAAT
CCTATCACTTTCAGAAGCAAATGAAGCGAAATAACGATACATCCCAACCC
ATGGATTATTTCTTGTATACTTAGCATGCGAAAACGGAGTGGCCTGCTCT
TATCTCCTGGAAAGCTGCACTGACCACAGTGGGCAGTAAAATGAAGTACC
AGAACGAGATAATGCCAAAAGAAGTAACCGAGCTTTCACAATCC back to topprotein sequence of rna6463 >rna6463-protein ID=rna6463-protein|Name=rna6463|organism=Nannochloropsis gaditana|type=polypeptide|length=182bp
MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLED
VLQYKRAVPFTRFKGGIGRHAQGKLLSVPGSQCAWPQKATKIVLDMLTNA
ESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEI
ILTEKPVPVKKEPGAPKLTRKQAARVRVGGGN back to topmRNA from alignment at CM002468.1:565585..566865+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6463 ID=rna6463|Name=rna6463|organism=Nannochloropsis gaditana|type=mRNA|length=1281bp|location=Sequence derived from alignment at CM002468.1:565585..566865+ (Nannochloropsis gaditana)
TGAGCAGCGCTTTAGTTGAAGACACTGGAGGTCCTAAATGATAGTGGATA
GACTTATTGAGAGACACTGGGCGGTCAGAGCTAGCAATAAGTGGCTGGGA
AGAGGGCATGCCGGCAAGGTTGTtgagaaggacgaagaagagtGAAAGCG
AAGGGCACTCACATTCTATCCATAAACATTCCTCAGCCCCAATGACCCAC
ACGCCCCCTATCACGCCATATGCTAGTGATAAGTGGTGGTGCGGGCCAGC
CCTCGATTTTATATGGGGTCATAAGGTCCAAGGGGGCTGAATTGCACCCC
GACCTCACGCCAGACGGTCATCTCTACCTAGCTCTCAAACACCTGACCGT
CTTTTCTCTTTGATTGACAATCATACAGGAAATAATGGTCCGGTACAGCC
GCGAGATTGATGACCCGAACAAGGGTACGTTTGTGTGGGCAAGAGTTTTG
CGTGTCATGTCAGCATATGCCTCACGAAGTGCTCAACACCTTCGATTTTC
CTACTTACCATATCCAATATAGCCGCTAAGGCGCGCGGCTCTCACCTCCG
TGTGCACTTCAAGCATGTCCGTGAAGTATCGCACACAATCACGGGGTGGC
AAGTGGGCAAAGCCAAGCAGTTTCTTGAGGATGTGCTTCAGTACAAGCGG
GCCGTGCCGTTCACCCGGTTTAAGGGTGGCATCGGCCGACATGCTCAGGG
CAAACTCTTGAGTGTGCCAGGCTCTCAGTGCGCGTGGCCTCAGAAGGCCA
CTAAGATCGTCTTGGATATGCTCACGAACGCAGAGTCCAACGCGGAAGTG
AAGGGAATGGACACGGACAACCTTTATATCGTCCACGCACAAACCAACCG
GGCACCCAAGCAACGCCGACGGACTTATCGGGCCCACGGTCGCATCAATC
CGTACATGTCAAGCCCGGCTCATCTGGAAATTATCCTGACTGAGAAGCCT
GTGCCCGTGAAAAAGGAGCCAGGTGCTCCCAAGCTTACCCGCAAGCAGGC
AGCCAGGGTTCGTGTAGGAGGAGGCAACTGAAGAGGATGTCACGACAGAG
AGGAATGGGATGGAGATGAGGACCATTTATCCGTTGTCTGATGTCTTGTG
GGATTGGCTTAATTCTGAGTGAAGTCAGTGCGCTGCCCTCGCTTTGGGGC
CTCCGCGAGAaacgtgaggagggaggcttgggcGGGACTGTACTTGGAAG
GAACATTCAGAGCCCGCATCGCATCACGAtatggagaaagaaatacTTGA
GAAAAATTGGTTGCGCCTTGTTTCATTTATG back to topCoding sequence (CDS) from alignment at CM002468.1:565585..566865+ >rna6463 ID=rna6463|Name=rna6463|organism=Nannochloropsis gaditana|type=CDS|length=1098bp|location=Sequence derived from alignment at CM002468.1:565585..566865+ (Nannochloropsis gaditana)
ATGGTCCGGTACAGCCGCGAGATTGATGACCCGAACAAGGCCGCTAAGGC
GCGCGGCTCTCACCTCCGTGTGCACTTCAAGCATGTCCGTGAAGTATCGC
ACACAATCACGGGGTGGCAAGTGGGCAAAGCCAAGCAGTTTCTTGAGGAT
GTGCTTCAGTACAAGCGGGCCGTGCCGTTCACCCGGTTTAAGGGTGGCAT
CGGCCGACATGCTCAGGGCAAACTCTTGAGTGTGCCAGGCTCTCAGTGCG
CGTGGCCTCAGAAGGCCACTAAGATCGTCTTGGATATGCTCACGAACGCA
GAGTCCAACGCGGAAGTGAAGGGAATGGACACGGACAACCTTTATATCGT
CCACGCACAAACCAACCGGGCACCCAAGCAACGCCGACGGACTTATCGGG
CCCACGGTCGCATCAATCCGTACATGTCAAGCCCGGCTCATCTGGAAATT
ATCCTGACTGAGAAGCCTGTGCCCGTGAAAAAGGAGCCAGGTGCTCCCAA
GCTTACCCGCAAGCAGGCAGCCAGGGTTCGTGTAGGAGGAGGCAACTGAA
TGGTCCGGTACAGCCGCGAGATTGATGACCCGAACAAGGCCGCTAAGGCG
CGCGGCTCTCACCTCCGTGTGCACTTCAAGCATGTCCGTGAAGTATCGCA
CACAATCACGGGGTGGCAAGTGGGCAAAGCCAAGCAGTTTCTTGAGGATG
TGCTTCAGTACAAGCGGGCCGTGCCGTTCACCCGGTTTAAGGGTGGCATC
GGCCGACATGCTCAGGGCAAACTCTTGAGTGTGCCAGGCTCTCAGTGCGC
GTGGCCTCAGAAGGCCACTAAGATCGTCTTGGATATGCTCACGAACGCAG
AGTCCAACGCGGAAGTGAAGGGAATGGACACGGACAACCTTTATATCGTC
CACGCACAAACCAACCGGGCACCCAAGCAACGCCGACGGACTTATCGGGC
CCACGGTCGCATCAATCCGTACATGTCAAGCCCGGCTCATCTGGAAATTA
TCCTGACTGAGAAGCCTGTGCCCGTGAAAAAGGAGCCAGGTGCTCCCAAG
CTTACCCGCAAGCAGGCAGCCAGGGTTCGTGTAGGAGGAGGCAACTGA back to top
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