EWM24251.1, cds6447 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24251.1 vs. NCBI_GenBank
Match: gi|585105642|gb|EWM24251.1| (60s ribosomal protein l17-2 [Nannochloropsis gaditana]) HSP 1 Score: 379.022 bits (972), Expect = 3.595e-133 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 Query: 1 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKLLSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKKEPGAPKLTRKQAARVRVGGGN 182 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKLLSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKKEPGAPKLTRKQAARVRVGGGN Sbjct: 1 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKLLSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKKEPGAPKLTRKQAARVRVGGGN 182
BLAST of EWM24251.1 vs. NCBI_GenBank
Match: gi|669154604|ref|XP_008612864.1| (50S ribosomal protein L22 [Saprolegnia diclina VS20] >gi|813148856|ref|XP_012200075.1| 50S ribosomal protein L22 [Saprolegnia parasitica CBS 223.65] >gi|530735399|gb|EQC33641.1| 50S ribosomal protein L22 [Saprolegnia diclina VS20] >gi|641535310|gb|KDO29228.1| 50S ribosomal protein L22 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 248.825 bits (634), Expect = 1.333e-81 Identity = 122/185 (65.95%), Postives = 149/185 (80.54%), Query Frame = 0 Query: 1 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKLLSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPV-KKEPGAP-KLTRKQAARVRV--GGG 181 M YS+E +D +++AK+RGSHLRVHFKH REV HTI G VGKAK+FLE VL+ K AVPFT+F GG+GRHAQGK L+ PG +C WPQKATKI+LD++ NAE+NAE+KG+DTD LYI H Q N A KQRRRTYRAHGRI PYMS+PAH+E+ILTEK V K E AP K++RK+ A++R+ GGG Sbjct: 1 MPSYSQEPEDQSRSAKSRGSHLRVHFKHCREVCHTIKGLPVGKAKKFLEAVLEKKAAVPFTKFTGGVGRHAQGKTLNAPGDKCRWPQKATKIILDLVKNAEANAELKGLDTDKLYIAHTQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKKENVAKAEDAAPAKISRKRNAQLRLKSGGG 185
BLAST of EWM24251.1 vs. NCBI_GenBank
Match: gi|1173945191|gb|OQR93850.1| (60S ribosomal protein L17-2 [Achlya hypogyna]) HSP 1 Score: 247.284 bits (630), Expect = 6.112e-81 Identity = 120/185 (64.86%), Postives = 148/185 (80.00%), Query Frame = 0 Query: 1 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKLLSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKK--EPGAPKLTRKQAARVRV--GGG 181 M YS+E +D +++AK+RGSHLRVHFKH REV HTI G V KAK+FLE VL+ K AVPFT+F GG+GRHAQGK L+ PG +C WPQKATKI+LD++ NAE+NAE+KG+DT+ LYI H Q N A KQRRRTYRAHGRI PYMS+PAH+EIILTEK V K + APK++RK+ A++R+ GGG Sbjct: 1 MPSYSQEPEDQSRSAKSRGSHLRVHFKHCREVCHTINGLPVVKAKKFLEAVLEKKAAVPFTKFTGGVGRHAQGKSLNAPGDKCRWPQKATKIILDLVKNAEANAELKGLDTEKLYIAHTQANAAIKQRRRTYRAHGRIGPYMSNPAHIEIILTEKKENVAKAEDAAAPKVSRKRNAQLRLKSGGG 185
BLAST of EWM24251.1 vs. NCBI_GenBank
Match: gi|298709755|emb|CBJ31558.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 247.669 bits (631), Expect = 7.698e-81 Identity = 127/207 (61.35%), Postives = 151/207 (72.95%), Query Frame = 0 Query: 1 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKL-----------------------LSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKKEPGAPKLTRKQAAR---VRVGGG 181 MV+YS+EI+ K+AKARGS+LRVHFKH+REV+H I G ++ KAK +L+DVL+YKRAVPFT F GG+GRHAQGKL PGS+C WPQKAT+IVLD++ NAESNAE K +D D+LYIVH Q NRAPKQRRRTYRAHGRINPYMSSPAH+E+IL+EK V VKK K TRKQ A+ V+ GGG Sbjct: 1 MVQYSKEIEG-TKSAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGG 206
BLAST of EWM24251.1 vs. NCBI_GenBank
Match: gi|695375132|ref|XP_009515467.1| (hypothetical protein PHYSODRAFT_284211 [Phytophthora sojae] >gi|348688378|gb|EGZ28192.1| hypothetical protein PHYSODRAFT_284211 [Phytophthora sojae]) HSP 1 Score: 243.817 bits (621), Expect = 1.163e-79 Identity = 122/186 (65.59%), Postives = 145/186 (77.96%), Query Frame = 0 Query: 1 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKLLSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKK--EPGAP-KLTRKQAARVRV--GGG 181 M YS+E +D +AAKARGSHLRVHFKH REVSH I G + KAK FL+ VL+YK+AVPFT+F GG GRHAQGKL G +C WPQKATKI+LD++ NAE+NAEVKG+DTD LYI HAQ N A KQRRRTYRAHGRI PYMS+PAH+E+ILTEK V K E P K++RK+ A++R+ GGG Sbjct: 1 MPSYSQEPEDAQRAAKARGSHLRVHFKHCREVSHAIKGMPLNKAKSFLQAVLEYKQAVPFTKFTGGCGRHAQGKLRGAAGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDLLYISHAQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKRANVAKAAEEAKPVKVSRKRQAQLRLKSGGG 186
BLAST of EWM24251.1 vs. NCBI_GenBank
Match: gi|301117396|ref|XP_002906426.1| (60S ribosomal protein L17-2 [Phytophthora infestans T30-4] >gi|675205223|ref|XP_008911496.1| ribosomal protein L22 [Phytophthora parasitica INRA-310] >gi|262107775|gb|EEY65827.1| 60S ribosomal protein L17-2 [Phytophthora infestans T30-4] >gi|566014731|gb|ETI37642.1| ribosomal protein L22 [Phytophthora parasitica P1569] >gi|567952228|gb|ETK77908.1| ribosomal protein L22 [Phytophthora parasitica] >gi|567980891|gb|ETL31341.1| ribosomal protein L22 [Phytophthora parasitica] >gi|568010372|gb|ETL84560.1| ribosomal protein L22 [Phytophthora parasitica] >gi|568040240|gb|ETM37700.1| ribosomal protein L22 [Phytophthora parasitica] >gi|568043162|gb|ETM40459.1| ribosomal protein L22 [Phytophthora parasitica] >gi|568088090|gb|ETN02952.1| ribosomal protein L22 [Phytophthora parasitica INRA-310] >gi|570318488|gb|ETO66436.1| ribosomal protein L22 [Phytophthora parasitica P1976] >gi|570942294|gb|ETP07551.1| ribosomal protein L22 [Phytophthora parasitica CJ01A1] >gi|570972801|gb|ETP35579.1| ribosomal protein L22 [Phytophthora parasitica P10297] >gi|970650174|gb|KUF89268.1| Fructose 1 [Phytophthora nicotianae]) HSP 1 Score: 243.817 bits (621), Expect = 1.563e-79 Identity = 122/186 (65.59%), Postives = 145/186 (77.96%), Query Frame = 0 Query: 1 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKLLSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKK--EPGAP-KLTRKQAARVRV--GGG 181 M YS+E +D +AAKARGSHLRVHFKH REVSH I G + KAK FL+ VL+YK+AVPFT+F GG GRHAQGKL G +C WPQKATKI+LD++ NAE+NAEVKG+DTD LYI HAQ N A KQRRRTYRAHGRI PYMS+PAH+E+ILTEK V K E P K++RK+ A++R+ GGG Sbjct: 1 MPSYSQEPEDAQRAAKARGSHLRVHFKHCREVSHAIKGMPLNKAKSFLQAVLEYKQAVPFTKFTGGCGRHAQGKLRGAAGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDLLYISHAQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKRANVAKAVEEAKPVKVSRKRQAQLRLKSGGG 186
BLAST of EWM24251.1 vs. NCBI_GenBank
Match: gi|673031214|ref|XP_008869568.1| (ribosomal protein L22 [Aphanomyces invadans] >gi|574474719|gb|ETW01720.1| ribosomal protein L22 [Aphanomyces invadans]) HSP 1 Score: 244.588 bits (623), Expect = 2.038e-79 Identity = 119/185 (64.32%), Postives = 146/185 (78.92%), Query Frame = 0 Query: 1 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKLLSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKK--EPGAPKLTRKQAA--RVRVGGG 181 M YS+E +D N +AKARG HLRVH+KH REV HTI G+ + KAK+FL DVL++K AVPFT++ GG GRHAQGKLL+ PG +C WPQKAT+I+LD++ NAE+NAE+KG+DT LYI HAQ N A KQRRRTYRAHGRI PYM++PAH+E+ILTEK V K EP KLTRK+ A R++ GGG Sbjct: 38 MPSYSQEPEDQNTSAKARGRHLRVHYKHCREVCHTIKGYSLAKAKKFLGDVLEFKAAVPFTKYTGGPGRHAQGKLLNAPGDKCRWPQKATRIILDLVKNAEANAELKGLDTAKLYIAHAQANMAIKQRRRTYRAHGRIGPYMANPAHIELILTEKKENVAKAEEPKTTKLTRKRQAVLRLKSGGG 222
BLAST of EWM24251.1 vs. NCBI_GenBank
Match: gi|1214713983|gb|OWZ24859.1| (60S ribosomal protein L17-2 [Phytophthora megakarya]) HSP 1 Score: 243.432 bits (620), Expect = 2.078e-79 Identity = 122/186 (65.59%), Postives = 145/186 (77.96%), Query Frame = 0 Query: 1 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKLLSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKK--EPGAP-KLTRKQAARVRV--GGG 181 M YS+E +D +AAKARGSHLRVHFKH REVSH I G + KAK FL+ VL+YK+AVPFT+F GG GRHAQGKL G +C WPQKATKI+LD++ NAE+NAEVKG+DTD LYI HAQ N A KQRRRTYRAHGRI PYMS+PAH+E+ILTEK V K E P K++RK+ A++R+ GGG Sbjct: 1 MPSYSQEPEDAQRAAKARGSHLRVHFKHCREVSHAIKGMPLNKAKTFLQAVLEYKQAVPFTKFTGGCGRHAQGKLRGAAGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDLLYISHAQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKRANVAKAVEEAKPVKVSRKRQAQLRLKSGGG 186
BLAST of EWM24251.1 vs. NCBI_GenBank
Match: gi|698812672|ref|XP_009839365.1| (ribosomal protein L22 [Aphanomyces astaci] >gi|574105596|gb|ETV71119.1| ribosomal protein L22 [Aphanomyces astaci]) HSP 1 Score: 242.662 bits (618), Expect = 3.512e-79 Identity = 118/185 (63.78%), Postives = 145/185 (78.38%), Query Frame = 0 Query: 1 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKLLSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKK--EPGAPKLTRKQAA--RVRVGGG 181 M YS+E +D N +AKARG HLRVH+KH REV HTI G+ + KAK+FL DVL++K AVPFT++ GG GRHAQGKLL+ PG +C WPQKAT+I+LD++ NAE+NAE+K +DT LYI HAQ N A KQRRRTYRAHGRI PYM++PAH+E+ILTEK V K EP KLTRK+ A R++ GGG Sbjct: 1 MPSYSQEPEDQNTSAKARGRHLRVHYKHCREVCHTIKGYSLVKAKKFLGDVLEFKAAVPFTKYTGGPGRHAQGKLLNAPGDKCRWPQKATRIILDLVKNAEANAELKELDTSKLYIAHAQANMAIKQRRRTYRAHGRIGPYMANPAHIELILTEKKDNVAKAEEPKTAKLTRKRQAVLRLKSGGG 185
BLAST of EWM24251.1 vs. NCBI_GenBank
Match: gi|953496143|emb|CEG41743.1| (ribosomal protein l22 [Plasmopara halstedii]) HSP 1 Score: 241.891 bits (616), Expect = 8.163e-79 Identity = 120/186 (64.52%), Postives = 144/186 (77.42%), Query Frame = 0 Query: 1 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKLLSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKK---EPGAPKLTRKQAARVRV--GGG 181 M YS+E +D +AAKARGSHLRVHFKH REV+H I G + KAK FL+ VL+YK+AVPFT+F GG GRHAQGKL G +C WPQKATKI+LD++ NAE+NAEVKG+DTD LYI HAQ N A KQRRRTYRAHGRI PYMS+PAH+E+ILTEK V K E K++RK+ A++R+ GGG Sbjct: 1 MPSYSQEPEDAQRAAKARGSHLRVHFKHCREVTHAIKGMPLNKAKSFLQAVLEYKQAVPFTKFTGGCGRHAQGKLRGAAGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDLLYISHAQANTAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKRANVAKAVEETKPVKVSRKRQAQLRLKSGGG 186 The following BLAST results are available for this feature:
BLAST of EWM24251.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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