rna646, rna646 (mRNA) Nannochloropsis gaditana

Overview
Namerna646
Unique Namerna646
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length447
Alignment locationCM002456.1:75578..76063 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100346g5.7656.mrna
Orig protein idgnl|cribi|Naga_100346g5.7656
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:75578..76063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100346g5gene619Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna646rna646-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30028.1cds646Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna646 ID=rna646|Name=rna646|organism=Nannochloropsis gaditana|type=mRNA|length=447bp
ATGGAGCGGGCGTCCGATTGCGTTGTAGAACTGCTAACTCAACACAATAA
GAACTCTGGCCTGACAACGTTGGAGGACAAATTGATAAGTGCATTGAACA
CTTCCAGGACGTGGAAAACGCTTTGCGTAAAATATTGGCAGATTTTTGCT
GGAAATGCTGGAAGACAAATGCTAGCGAGCAAGGTATTACCAGTGCTAAA
GTTGCCAGTGGAAAAGCGCACAAAAAAGAAAAGGTTCGCGAAGAACGCTT
GGGCAGCCATTACTCAGAAATTAATATCACGAATGGAGAGTATCCCTCAA
AGCAAATCAAACGCTATTGGCAGGAAGTCCGCCCTCTCGTGGCATCCGTC
CTATAGCTATCAATTAGAGTGCTCAAAGACCGACGGTACTCATAGGGAGA
AGAAAGGTATAGATAAATACCAGAATAGACGGAACTTTGGCAATTAG
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protein sequence of rna646

>rna646-protein ID=rna646-protein|Name=rna646|organism=Nannochloropsis gaditana|type=polypeptide|length=87bp
MFEVLKYLDCRPRYYVVKGRSRTNFPCWICKVPCARLDDPTFDATQFLRE
RDEVYDLYDDIQALYAATEQEKRELKNSVIQAREGSK
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mRNA from alignment at CM002456.1:75578..76063-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna646 ID=rna646|Name=rna646|organism=Nannochloropsis gaditana|type=mRNA|length=486bp|location=Sequence derived from alignment at CM002456.1:75578..76063- (Nannochloropsis gaditana)
ATGTTTGAGGTCCTGAAATATCTGGATTGTGATCATCGAAACGGTCTTGC
GCATTGAAGACATCAAAAAGACGATTCGATCTGTTGTCATCAATTACAGG
ATCGATAACCATAACCACACGAGTCACTCCAAAAAAGATCAACTTAGGAC
GACTTAGGGATCAACAAATCGATTCAGGGCTGCGCTGCTGACGATCGATT
GCTCATTTACATCGCCCAGTCATCCCCTCCATGGCATTGATGAACAGCAG
GCAGGCCTCGTTACTATGTGGTGAAAGGCAGGAGCAGGACTAATTTTCCT
TGCTGGATTTGCAAAGTACCATGCGCCCGGCTGGATGACCCAACGTTCGA
CGCGACGCAATTCCTGCGGGAGCGTGACGAAGTGTACGACCTGTACGACG
ATATTCAAGCCTTATACGCAGCGACGGAGCAAGAAAAGCGTGAGCTGAAA
AACAGTGTGATACAGGCAAGGGAAGGATCGAAATAG
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Coding sequence (CDS) from alignment at CM002456.1:75578..76063-

>rna646 ID=rna646|Name=rna646|organism=Nannochloropsis gaditana|type=CDS|length=528bp|location=Sequence derived from alignment at CM002456.1:75578..76063- (Nannochloropsis gaditana)
GCAGGCCTCGTTACTATGTGGTGAAAGGCAGGAGCAGGACTAATTTTCCT
TGCTGGATTTGCAAAGTACCATGCGCCCGGCTGGATGACCCAACGTTCGA
CGCGACGCAATTCCTGCGGGAGCGTGACGAAGTGTACGACCTGTACGACG
ATATTCAAGCCTTATACGCAGCGACGGAGCAAGAAAAGCGTGAGCTGAAA
AACAGTGTGATACAGGCAAGGGAAGGATCGAAATAGATGTTTGAGGTCCT
GAAATATCTGGATTGCAGGCCTCGTTACTATGTGGTGAAAGGCAGGAGCA
GGACTAATTTTCCTTGCTGGATTTGCAAAGTACCATGCGCCCGGCTGGAT
GACCCAACGTTCGACGCGACGCAATTCCTGCGGGAGCGTGACGAAGTGTA
CGACCTGTACGACGATATTCAAGCCTTATACGCAGCGACGGAGCAAGAAA
AGCGTGAGCTGAAAAACAGTGTGATACAGGCAAGGGAAGGATCGAAATAG
ATGTTTGAGGTCCTGAAATATCTGGATT
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Synonyms
Publications