rna6453, rna6453 (mRNA) Nannochloropsis gaditana

Overview
Namerna6453
Unique Namerna6453
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length876
Alignment locationCM002468.1:538266..539528 -

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Properties
Property NameValue
Producttranscription factor iie
Orig transcript idgnl|cribi|Naga_100020g24.5379.mrna
Orig protein idgnl|cribi|Naga_100020g24.5379
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:538266..539528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100020g24gene6235Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24246.1cds6437Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6453rna6453-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6453 ID=rna6453|Name=rna6453|organism=Nannochloropsis gaditana|type=mRNA|length=876bp
ATGAAATCAATATCAAGCTCCATTACGATTACAACATATTTCGTGCTTTT
CTGGCTTTCGGTGCACACCGAAGCTTTTATGAGCGGTCTCAAACAATCTG
GGTCGCCCGCTAGTAAGCTGAGTGTCTCGTTTTTCAATGCCGGTAATGAC
AAAAAAGTCGGCGGCAACAAAGGGGTCCTCGTGGTTGGCGCAACGGGAAA
GACTGGAAAGCGAATTGTAGAGGTGCTCCTTAAAAAGGGCAGAAAGGTGA
CTGCAGGAGTGCGTGATCTGGCCAAGGGCGAGGAAGCCCTTGGGAAAGCT
GGCAATAAACTTTCCTTCCTCGAGGTGGATGTTGTGGCAGACTCACCCGC
AACTCTGGCCGAAAAAGTGACGGATTACAGTGCCGTCATTTGTGCGACCG
GCTACTCTCCATCAGGGCCTATCGATCTCCTCGGCCCTTACAAGGTAGAC
AACATGGGGACGACCAAATTGGCGGAAGCCCTAGTCGCAGCGGGAGTGCC
AAAGATGGTTCTAGTCTCGTCCTTGCTCACGAACGGTTGGGCCGCGGGGC
AGGGATTGAATAAAAATTACATCATTCTTAACCTCTTCGGGGGGGTGTTG
GTTGCGAAAAATACTGCGGAAAGGAAGATCATGGCGACGACGGGCCTTGA
CTGGACGATTGTGCGTCCGGGAGGGCTACGGGAGTCGCCGCCTGAAGGAC
GAGTGAAATACGGTAAGGCTGATACCCTATTTGGAGGTAGTATCTCCCGC
TACTCAGTCGCAGAGGTATGTGTGGCTGCCCTAGACAGCAAAGCGGCGAG
CAGGAAAATAGTGGAGATTGTCTCAGAGGGGGATGCACCCAAGCTGACCT
TTGAGCAAGGATTCGCTAGCGCTTGA
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protein sequence of rna6453

>rna6453-protein ID=rna6453-protein|Name=rna6453|organism=Nannochloropsis gaditana|type=polypeptide|length=420bp
MLGSAASGVANDAKRTSNHTSSKVSGAGGGNPLELAKRLVRAVARAFYAD
DTVVVLDALLRDRHVKDTDIDTRLGVGAKQARRLLTELLEERLIKTEDIV
DELTGKRELFYYIDFSHFTNVVRYRIHLMQRELERMEREANDNQTYECPV
CGRALPLLEVQPLRNKRYGFCCPTCCSSELHATCEGSQWQLRPKTGVTGF
EEVQALKEKMRAQMYGAASETSAALHDGIYNLLSALEHKPLPSNLPSELI
AVGVGGLPAGGTELQRRRREGAGGGTGGHAGGSSIGIFEDLAASTRDGGI
QADEETGETTPSLVRPARAQPSFLQGSRVIKEVADPLQHETRKPQATGNE
VADGLFMHKVEEEAKHVDVYRQAYAEAFKRGVGVETIEKSIKVERDDGGL
DGSEGIEAVEEEDVDWEEGE
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mRNA from alignment at CM002468.1:538266..539528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6453 ID=rna6453|Name=rna6453|organism=Nannochloropsis gaditana|type=mRNA|length=1263bp|location=Sequence derived from alignment at CM002468.1:538266..539528- (Nannochloropsis gaditana)
ATGCTCGGAAGCGCGGCGAGTGGAGTAGCGAATGATGCCAAACGGACTTC
AAATCACACGAGCAGCAAGGTCTCGGGGGCTGGAGGCGGGAACCCCTTAG
AGTTAGCCAAAAGACTAGTCCGGGCTGTTGCCCGGGCGTTCTACGCGGAC
GACACGGTGGTGGTGTTAGATGCCTTGCTGCGGGACCGGCATGTCAAGGA
CACGGATATCGACACTCGCTTGGGGGTGGGGGCCAAACAAGCGCGGCGAC
TGCTCACAGAACTTCTAGAGGAGCGTTTGATCAAGACGGAAGACATCGTG
GATGAGCTGACGGGCAAACGGGAACTGTTTTACTACATCGATTTCTCTCA
CTTTACCAATGTTGTGCGATACCGGATTCACCTCATGCAGCGGGAACTGG
AGCGGATGGAACGTGAAGCCAACGACAATCAAACCTACGAGTGTCCGGTG
TGCGGTCGTGCCTTGCCGCTCTTGGAGGTTCAGCCCCTGCGCAACAAGCG
GTACGGCTTCTGTTGCCCCACTTGCTGTTCAAGCGAGCTACATGCCACGT
GTGAAGGCTCCCAGTGGCAGCTAAGGCCGAAAACTGGCGTCACGGGTTTT
GAGGAAGTACAGGCGCTAAAAGAAAAGATGCGTGCACAAATGTATGGCGC
GGCATCGGAGACAAGCGCCGCGCTCCACGACGGCATATATAATCTTCTGT
CAGCGCTGGAGCACAAGCCGCTGCCGAGCAATCTTCCGAGTGAGCTTATC
GCAGTCGGCGTAGGCGGCCTCCCGGCTGGAGGAACAGAGCTTCAACGGCG
GCGACGGGAGGGAGCGGGAGGAGGGACAGGAGGTCATGCAGGAGGGAGCT
CAATAGGTATTTTTGAGGACCTTGCGGCGTCCACTCGAGACGGCGGCATA
CAGGCGGACGAGGAGACCGGCGAGACGACGCCCAGCCTTGTCCGGCCTGC
GCGTGCTCAGCCCTCCTTTCTGCAGGGCAGCCGAGTCATCAAGGAGGTCG
CCGACCCTTTGCAACACGAGACGAGGAAACCGCAGGCCACTGGAAATGAG
GTGGCCGATGGACTTTTCATGCACAAAGTCGAGGAAGAAGCTAAGCACGT
TGACGTGTATCGTCAAGCATATGCCGAAGCCTTCAAACGCGGTGTTGGGG
TCGAAACCATCGAAAAGAGTATTAAAGTAGAGAGAGACGATGGTGGCCTC
GATGGGAGTGAAGGGATCGAGGCGGTGGAGGAGGAGGACGTTGACTGGGA
GGAGGGCGAGTGA
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Coding sequence (CDS) from alignment at CM002468.1:538266..539528-

>rna6453 ID=rna6453|Name=rna6453|organism=Nannochloropsis gaditana|type=CDS|length=1263bp|location=Sequence derived from alignment at CM002468.1:538266..539528- (Nannochloropsis gaditana)
ATGCTCGGAAGCGCGGCGAGTGGAGTAGCGAATGATGCCAAACGGACTTC
AAATCACACGAGCAGCAAGGTCTCGGGGGCTGGAGGCGGGAACCCCTTAG
AGTTAGCCAAAAGACTAGTCCGGGCTGTTGCCCGGGCGTTCTACGCGGAC
GACACGGTGGTGGTGTTAGATGCCTTGCTGCGGGACCGGCATGTCAAGGA
CACGGATATCGACACTCGCTTGGGGGTGGGGGCCAAACAAGCGCGGCGAC
TGCTCACAGAACTTCTAGAGGAGCGTTTGATCAAGACGGAAGACATCGTG
GATGAGCTGACGGGCAAACGGGAACTGTTTTACTACATCGATTTCTCTCA
CTTTACCAATGTTGTGCGATACCGGATTCACCTCATGCAGCGGGAACTGG
AGCGGATGGAACGTGAAGCCAACGACAATCAAACCTACGAGTGTCCGGTG
TGCGGTCGTGCCTTGCCGCTCTTGGAGGTTCAGCCCCTGCGCAACAAGCG
GTACGGCTTCTGTTGCCCCACTTGCTGTTCAAGCGAGCTACATGCCACGT
GTGAAGGCTCCCAGTGGCAGCTAAGGCCGAAAACTGGCGTCACGGGTTTT
GAGGAAGTACAGGCGCTAAAAGAAAAGATGCGTGCACAAATGTATGGCGC
GGCATCGGAGACAAGCGCCGCGCTCCACGACGGCATATATAATCTTCTGT
CAGCGCTGGAGCACAAGCCGCTGCCGAGCAATCTTCCGAGTGAGCTTATC
GCAGTCGGCGTAGGCGGCCTCCCGGCTGGAGGAACAGAGCTTCAACGGCG
GCGACGGGAGGGAGCGGGAGGAGGGACAGGAGGTCATGCAGGAGGGAGCT
CAATAGGTATTTTTGAGGACCTTGCGGCGTCCACTCGAGACGGCGGCATA
CAGGCGGACGAGGAGACCGGCGAGACGACGCCCAGCCTTGTCCGGCCTGC
GCGTGCTCAGCCCTCCTTTCTGCAGGGCAGCCGAGTCATCAAGGAGGTCG
CCGACCCTTTGCAACACGAGACGAGGAAACCGCAGGCCACTGGAAATGAG
GTGGCCGATGGACTTTTCATGCACAAAGTCGAGGAAGAAGCTAAGCACGT
TGACGTGTATCGTCAAGCATATGCCGAAGCCTTCAAACGCGGTGTTGGGG
TCGAAACCATCGAAAAGAGTATTAAAGTAGAGAGAGACGATGGTGGCCTC
GATGGGAGTGAAGGGATCGAGGCGGTGGAGGAGGAGGACGTTGACTGGGA
GGAGGGCGAGTGA
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Synonyms
Publications