rna6452, rna6452 (mRNA) Nannochloropsis gaditana

Overview
Namerna6452
Unique Namerna6452
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2427
Alignment locationCM002468.1:537117..537992 -

Link to JBrowse

Properties
Property NameValue
Productputative chloroplastic-like protein
Orig transcript idgnl|cribi|Naga_100020g25.5388.mrna
Orig protein idgnl|cribi|Naga_100020g25.5388
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:537117..537992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100020g25gene6234Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24255.1cds6436Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6452rna6452-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6452 ID=rna6452|Name=rna6452|organism=Nannochloropsis gaditana|type=mRNA|length=2427bp
AGCGAGACGGCTTGCCCAGAGGGAGCCACGGGACGGGCCTAGTATCTTTA
CAGGCTTGCTTTCTGAAAACATTGCGGAGCCAAAATTAGACGTGAGACCC
ACACTAATGCGCTTATTACCTAATATGTAGTGCAGGGATCTCATCGAGGC
ACTGTATTTGCAGGTGCGTGCGGGCGGGCCGCATCAATTCAATCGTCCGC
GTCGCATGGGGCTGATGGGTCGTGGCGGGAGCAGCACAAGGAGCACAGGC
AAAATTCGTGTCCCCGCTTCTACGCAAGTCAAAAAAGCTAATGACCTTTG
TGACCCCCCGTTTAATGAAGAGGTTACCGCAGAATTGGCGTCATCAGGGC
TAGAAGGGAGCATTAATGGTGGTAAGATGCTACCGGAGGAAGAGAAAGAG
ATAATCGGCTTTGCCAAGAGGCTGGCGGCAAACGAGAAGCGGGAGAGAGA
TCAAGCCTTAAAACGCCTGGAGGTCTGGATGGCGAAACACAAGAACCTAT
CAGAGAAGGACTTTTTGAAGATTTGGAAAGGTTTGTTCTACTGCATGTGG
ATGTCGGACAGAGCTCGAGTGCAACAGGACTTGGGAGGAGCCATCTCTCG
CCTCGTCCACTGCTTTGGGAGAGACTCTGGCCGTGCCCATCTGTTTGTCG
GAGCTTTCTATCGCACTGTGCGCCGCGAATGGCCCGGTTTAGATCAGCAT
CGGTTGGATAAGTTCTATTCCTTCATGCGTCGAATGCTGCGAGAGTGTCT
CAGATTCGCCCAGCAGCGTGCTTGGTCTGCGGAAGCTCTAGTATCCGTTG
TCTTTCCCCTGAATGCAGAGGTGCTTCAGCAGCCCTGGCCCAATGGCTTG
CGTTTACATGCTTGTGATCTCATTCTCCCTGAATTGGCACGCGTTGGGGG
AGGAGAGCTGACGACTGCGCAGGCATTGGAGGTCCTCCAGCCCTTTCTGG
TGGCCATGGCCACGTCAGCGGACAGGGTCGTCGCAGAACGCGCGAGGGCA
CGGGTCCTGCTGGATCTAGTTGCATCGAAAGAGGCGGAGGGGGTTGAAGC
CGGTGGTAAGGAAGATGTGGATGCCGTGTCCTGCATGGCGGGCGTGGACA
TGGAGGCTGTGCAAGCAACTGTATTCGGACTGGCCTCTTCGTCCGCCACA
AGAGAGAGGTACCGGGCGGCGCTCTATGAAGCTCACAAAGCTTTTCAGAA
GCTGACAGGCAAAAAGAGGGCAGATCCTGCCAAGGCCATCCGTGTCTCTT
TCCCCGTGGTGGAGGCTGGCAAGGGGGTCTTGATGGGGCCGCAGGGGACG
GAACGCGGGGGCGGAGGCGGCGAGGCCGGGGATGGAGAGGAAGGAGAGAG
CTGCATCGACTCTGGGAATGGCGTCAAGAAACGGAAGGCACACGCGGTGC
TTGCCGAGGATAGGATGAAGCGTGAGAGGACGGGTACCGTGGACTCCAAG
ACTTTGTCGAGGGGAAAAGAAGCTGTTGATCTTAGAGACTCAAAGGTGCT
TGGAGCAACAGTGACTGAAAAGGCAGTGAAAGGAAAAGCAGGTGTCAAAA
AAATGATGTCCATGCAAAAGCCAGCGGAGAAGGATGGAAAATCTCTCGAG
GGTATGACTCAGCCGACGGCGAAAAAGAAATCCATTGACCTTAGCAGCCA
AAAAAGCAAGGGCGAAAGTAGCGCGAGCAAACGGAATGCAGATGAAGAGA
AGGCAATCGCCAAGTCAGTGACGGCCAAAAGATTGAAGGCGGACATCCTC
GGCGCGACAGGCGGCAACGCAAACCCCAAGAGGAAGAGCGAGGGTGATGA
CGCCCCGTCCGAGGCAGCCAGGGGTTCAATAGCTCATAAATTGTCCGCGA
GGAAGGTTGAGGCGGAAACCAACAAGGCGGAGGAGGCCAGCCATTTGCCA
GCGATGCGGCACTCTCAGGCCCCGGGGAAAGCCAATAAAAAAAAGGATGC
CACGGCATCTTCCACCGCACCCTCACCTTCAAATGCCACGACAGGGAAAA
CAGAAGCAGCTTTCATTCCATCCAAGACCTTCACAGGAGGGAAGCCCGGT
TATGTGTACAAGAAAGACCGCCAGGGTCTGGGCTACTACTTGGACGTCGG
TCAGCGAGGAGGCAAGAAGGTTCGATGGGGCAAAGTGCAAGTCAAGCTTT
TCAACAAGGACGCCTCTCCTGCCGACGGAAAGAGGAAGACAGTGTCGTTT
ATGAGGGAAAGCTCGGGCAGAGTCAGGGGCAAGACGCGGGTGGCAGGGGA
CAAGATGGGCCGTGGCAAGGGCGGCGGGGGCCCGAACAACCGACGCAGGG
CCGTCTCATACTTCTGAAATCTAATTGGTGCGAGCGAGGTTAATACATGT
GCCAACAGCTGTAATGTCGGAAAGTTTTGTTCCTGTAGGAAGTCTTGCGT
AAAGAAGGAGTCTAGAGACCGGAATCT
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protein sequence of rna6452

>rna6452-protein ID=rna6452-protein|Name=rna6452|organism=Nannochloropsis gaditana|type=polypeptide|length=291bp
MKSISSSITITTYFVLFWLSVHTEAFMSGLKQSGSPASKLSVSFFNAGND
KKVGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKA
GNKLSFLEVDVVADSPATLAEKVTDYSAVICATGYSPSGPIDLLGPYKVD
NMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVL
VAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISR
YSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFASA
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mRNA from alignment at CM002468.1:537117..537992-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6452 ID=rna6452|Name=rna6452|organism=Nannochloropsis gaditana|type=mRNA|length=876bp|location=Sequence derived from alignment at CM002468.1:537117..537992- (Nannochloropsis gaditana)
ATGAAATCAATATCAAGCTCCATTACGATTACAACATATTTCGTGCTTTT
CTGGCTTTCGGTGCACACCGAAGCTTTTATGAGCGGTCTCAAACAATCTG
GGTCGCCCGCTAGTAAGCTGAGTGTCTCGTTTTTCAATGCCGGTAATGAC
AAAAAAGTCGGCGGCAACAAAGGGGTCCTCGTGGTTGGCGCAACGGGAAA
GACTGGAAAGCGAATTGTAGAGGTGCTCCTTAAAAAGGGCAGAAAGGTGA
CTGCAGGAGTGCGTGATCTGGCCAAGGGCGAGGAAGCCCTTGGGAAAGCT
GGCAATAAACTTTCCTTCCTCGAGGTGGATGTTGTGGCAGACTCACCCGC
AACTCTGGCCGAAAAAGTGACGGATTACAGTGCCGTCATTTGTGCGACCG
GCTACTCTCCATCAGGGCCTATCGATCTCCTCGGCCCTTACAAGGTAGAC
AACATGGGGACGACCAAATTGGCGGAAGCCCTAGTCGCAGCGGGAGTGCC
AAAGATGGTTCTAGTCTCGTCCTTGCTCACGAACGGTTGGGCCGCGGGGC
AGGGATTGAATAAAAATTACATCATTCTTAACCTCTTCGGGGGGGTGTTG
GTTGCGAAAAATACTGCGGAAAGGAAGATCATGGCGACGACGGGCCTTGA
CTGGACGATTGTGCGTCCGGGAGGGCTACGGGAGTCGCCGCCTGAAGGAC
GAGTGAAATACGGTAAGGCTGATACCCTATTTGGAGGTAGTATCTCCCGC
TACTCAGTCGCAGAGGTATGTGTGGCTGCCCTAGACAGCAAAGCGGCGAG
CAGGAAAATAGTGGAGATTGTCTCAGAGGGGGATGCACCCAAGCTGACCT
TTGAGCAAGGATTCGCTAGCGCTTGA
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Coding sequence (CDS) from alignment at CM002468.1:537117..537992-

>rna6452 ID=rna6452|Name=rna6452|organism=Nannochloropsis gaditana|type=CDS|length=876bp|location=Sequence derived from alignment at CM002468.1:537117..537992- (Nannochloropsis gaditana)
ATGAAATCAATATCAAGCTCCATTACGATTACAACATATTTCGTGCTTTT
CTGGCTTTCGGTGCACACCGAAGCTTTTATGAGCGGTCTCAAACAATCTG
GGTCGCCCGCTAGTAAGCTGAGTGTCTCGTTTTTCAATGCCGGTAATGAC
AAAAAAGTCGGCGGCAACAAAGGGGTCCTCGTGGTTGGCGCAACGGGAAA
GACTGGAAAGCGAATTGTAGAGGTGCTCCTTAAAAAGGGCAGAAAGGTGA
CTGCAGGAGTGCGTGATCTGGCCAAGGGCGAGGAAGCCCTTGGGAAAGCT
GGCAATAAACTTTCCTTCCTCGAGGTGGATGTTGTGGCAGACTCACCCGC
AACTCTGGCCGAAAAAGTGACGGATTACAGTGCCGTCATTTGTGCGACCG
GCTACTCTCCATCAGGGCCTATCGATCTCCTCGGCCCTTACAAGGTAGAC
AACATGGGGACGACCAAATTGGCGGAAGCCCTAGTCGCAGCGGGAGTGCC
AAAGATGGTTCTAGTCTCGTCCTTGCTCACGAACGGTTGGGCCGCGGGGC
AGGGATTGAATAAAAATTACATCATTCTTAACCTCTTCGGGGGGGTGTTG
GTTGCGAAAAATACTGCGGAAAGGAAGATCATGGCGACGACGGGCCTTGA
CTGGACGATTGTGCGTCCGGGAGGGCTACGGGAGTCGCCGCCTGAAGGAC
GAGTGAAATACGGTAAGGCTGATACCCTATTTGGAGGTAGTATCTCCCGC
TACTCAGTCGCAGAGGTATGTGTGGCTGCCCTAGACAGCAAAGCGGCGAG
CAGGAAAATAGTGGAGATTGTCTCAGAGGGGGATGCACCCAAGCTGACCT
TTGAGCAAGGATTCGCTAGCGCTTGA
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Synonyms
Publications