EWM24255.1, cds6436 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|585105646|gb|EWM24255.1| (putative chloroplastic-like protein [Nannochloropsis gaditana]) HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0 Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0 Query: 1 MKSISSSITITTYFVLFWLSVHTEAFMSGLKQSGSPASKLSVSFFNAGNDKKVGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFASA 291 MKSISSSITITTYFVLFWLSVHTEAFMSGLKQSGSPASKLSVSFFNAGNDKKVGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFASA Sbjct: 1 MKSISSSITITTYFVLFWLSVHTEAFMSGLKQSGSPASKLSVSFFNAGNDKKVGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFASA 291
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|586715147|ref|XP_006847514.1| (uncharacterized protein At2g34460, chloroplastic [Amborella trichopoda] >gi|1173126962|ref|XP_020524760.1| uncharacterized protein At2g34460, chloroplastic [Amborella trichopoda] >gi|548850748|gb|ERN09095.1| hypothetical protein AMTR_s00014p00069090 [Amborella trichopoda]) HSP 1 Score: 212.616 bits (540), Expect = 2.371e-64 Identity = 121/238 (50.84%), Postives = 154/238 (64.71%), Query Frame = 0 Query: 51 KKVGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGF 288 KK+ G K V V GATG TGK+IV+ LL KG +V AGVRD+ + +L N + ++ DV S LAE + D AVICATG+ PS +DL P+KVDN GT L +A GV + +LVSS+L NG A GQ LN YI+LN+FG L+AK AE+ I ++G+++TI+RPGGLR PP G + DTLF GSISR VAEV V AL AS K+VEIVS +APK +F + F Sbjct: 43 KKLEGKK-VFVAGATGMTGKKIVDQLLSKGFQVRAGVRDVESAKSSLSSNQN-IQIVKADVTEGS-EKLAEAIGDAEAVICATGFRPS--LDLFAPWKVDNFGTVNLVDACRTVGVNRFILVSSILVNGAAMGQILNPAYIVLNIFGLTLIAKLQAEKYIR-SSGINFTIIRPGGLRNDPPSGSIAMESEDTLFEGSISREQVAEVAVEALRHPEASYKVVEIVSRTEAPKHSFAEMF 274
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|116788805|gb|ABK25008.1| (unknown [Picea sitchensis]) HSP 1 Score: 211.46 bits (537), Expect = 7.716e-64 Identity = 131/286 (45.80%), Postives = 170/286 (59.44%), Query Frame = 0 Query: 12 TYFVLFWLSVHTEAFMSGLKQSGSPASKLSVSFFNAGNDKKVGGN-------KGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290 +Y +F LS ++ F+ G+ + V+F + +K G K V V GATG TGKRIV LL KG V AGVRD+ + N + F++ DV + A L+E + D AVICATG+ PS +D L P+KVDN GT L +A + GV K++L+SS+L NG A GQ N YI+LN+FG LVAK AE+ I +G+D+TIVRPGGLR PP G + DTLF GSISR VAEV V AL AS K+VEIVS +APK + ++ FAS Sbjct: 5 SYPTIFRLS--SDNFIPRPSPLGARLRRCHVTFCSLKEEKDGQGEPNEQRTTKTVFVAGATGNTGKRIVTQLLSKGFNVKAGVRDVDSAKNNFPTDTN-IQFVKADVT-EGAAKLSEAIGDAEAVICATGFRPS--LDFLAPWKVDNFGTVNLVDACRSIGVNKLILISSILVNGAAIGQLFNPAYIVLNVFGLTLVAKLQAEQYIR-KSGIDFTIVRPGGLRNDPPSGNIVMQAEDTLFEGSISRDQVAEVAVEALLYPEASYKVVEIVSRENAPKKSLQELFAS 283
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|460374620|ref|XP_004233108.1| (PREDICTED: uncharacterized protein At2g34460, chloroplastic [Solanum lycopersicum] >gi|723675747|ref|XP_010316925.1| PREDICTED: uncharacterized protein At2g34460, chloroplastic [Solanum lycopersicum]) HSP 1 Score: 210.305 bits (534), Expect = 8.137e-64 Identity = 122/239 (51.05%), Postives = 154/239 (64.44%), Query Frame = 0 Query: 53 VGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYS-AVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290 +G K + V GATG TGKRIVE LL KG V AGVRD+ K + L +A L ++ DV S A LA+ + D S AVICATG+ PS +LL P+KVDN GT L +A G+ + +L+SS+L NG A GQ N YIILN+ G VLVAK AER I +G+++TI+RPGGL+ PP+G + DTLF GSISR VAEV V AL + K+VEIV+ DAPK +FE+ F S Sbjct: 14 IGQKKKIFVAGATGNTGKRIVEQLLAKGFAVKAGVRDVDKAKSVLPEANPFLQIVKTDVTEGS-AKLADAIGDDSNAVICATGFQPSW--NLLTPWKVDNFGTVNLVDACQKLGIDRFILISSILVNGAAMGQLFNPVYIILNVMGLVLVAKLQAERYIR-KSGINYTIIRPGGLKNDPPQGNIVMQPEDTLFRGSISRDQVAEVAVEALLHPESHYKVVEIVASTDAPKRSFEELFGS 248
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|970010903|ref|XP_015066348.1| (PREDICTED: uncharacterized protein At2g34460, chloroplastic-like [Solanum pennellii]) HSP 1 Score: 210.305 bits (534), Expect = 8.406e-64 Identity = 122/239 (51.05%), Postives = 154/239 (64.44%), Query Frame = 0 Query: 53 VGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYS-AVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290 +G K + V GATG TGKRIVE LL KG V AGVRD+ K + L +A L ++ DV S A LA+ + D S AVICATG+ PS +LL P+KVDN GT L +A G+ + +L+SS+L NG A GQ N YIILN+ G VLVAK AER I +G+++TI+RPGGL+ PP+G + DTLF GSISR VAEV V AL + K+VEIV+ DAPK +FE+ F S Sbjct: 14 IGQKKKIFVAGATGNTGKRIVEQLLAKGFAVKAGVRDVDKAKSVLPEANPFLQIVKADVTEGS-AKLADAIGDDSDAVICATGFQPSW--NLLTPWKVDNFGTVNLVDACQKLGIDRFILISSILVNGAAMGQLFNPVYIILNVMGLVLVAKLQAERYIR-KSGINYTIIRPGGLKNDPPQGNIVMQPEDTLFRGSISRDQVAEVAVEALLHPESHYKVVEIVASTDAPKRSFEELFGS 248
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|1009106910|ref|XP_015876908.1| (PREDICTED: uncharacterized protein At2g34460, chloroplastic isoform X2 [Ziziphus jujuba]) HSP 1 Score: 211.46 bits (537), Expect = 1.326e-63 Identity = 123/244 (50.41%), Postives = 151/244 (61.89%), Query Frame = 0 Query: 48 GNDKKVGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYS-AVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290 + V G K + V GATG TGK+IVE LL KG V AGVRD+ K + L L ++ DV S LAE + D S AVICATG+ P DL P+KVDN GT L EA GV + VL+SS+L NG A GQ LN YI LN+FG LVAK AE+ I +G+++TIVRPGGLR PP G V DTL+ G+ISR VAEV V AL AS K+VEI++ DAPK ++++ FAS Sbjct: 62 AEEANVTGKKKIFVAGATGSTGKKIVEQLLAKGYSVKAGVRDINKAKTTLSNGNPALQIVKADVTEGS-TKLAEAIGDDSEAVICATGFRPGW--DLFAPWKVDNFGTVNLVEACRRLGVNRFVLISSILVNGAAMGQILNPAYIFLNVFGLTLVAKLQAEKYIR-KSGINYTIVRPGGLRNEPPSGNVVMEAEDTLYEGTISRDQVAEVAVEALVHPEASYKVVEIIARADAPKRSYQELFAS 301
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|1009106908|ref|XP_015876903.1| (PREDICTED: uncharacterized protein At2g34460, chloroplastic isoform X1 [Ziziphus jujuba]) HSP 1 Score: 211.846 bits (538), Expect = 1.673e-63 Identity = 123/244 (50.41%), Postives = 151/244 (61.89%), Query Frame = 0 Query: 48 GNDKKVGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYS-AVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290 + V G K + V GATG TGK+IVE LL KG V AGVRD+ K + L L ++ DV S LAE + D S AVICATG+ P DL P+KVDN GT L EA GV + VL+SS+L NG A GQ LN YI LN+FG LVAK AE+ I +G+++TIVRPGGLR PP G V DTL+ G+ISR VAEV V AL AS K+VEI++ DAPK ++++ FAS Sbjct: 74 AEEANVTGKKKIFVAGATGSTGKKIVEQLLAKGYSVKAGVRDINKAKTTLSNGNPALQIVKADVTEGS-TKLAEAIGDDSEAVICATGFRPGW--DLFAPWKVDNFGTVNLVEACRRLGVNRFVLISSILVNGAAMGQILNPAYIFLNVFGLTLVAKLQAEKYIR-KSGINYTIVRPGGLRNEPPSGNVVMEAEDTLYEGTISRDQVAEVAVEALVHPEASYKVVEIIARADAPKRSYQELFAS 313
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|702344683|ref|XP_010056883.1| (PREDICTED: uncharacterized protein At2g34460, chloroplastic isoform X1 [Eucalyptus grandis]) HSP 1 Score: 209.92 bits (533), Expect = 6.090e-63 Identity = 122/238 (51.26%), Postives = 149/238 (62.61%), Query Frame = 0 Query: 54 GGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKV-TDYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290 G K V V GATG TGKRIV+ LL KG V AGVRD+ + A K L ++ DV S LAE + +D AVICATG+ P DL P+KVDN GT L EA GV + +L+SS+L NG A GQ LN YI LN+FG LVAK AE+ I +G+++TIVRPGGLR PP+G + DTL+ GSISR VAEV V AL+ +S K+VEIV+ DAPK FE+ F S Sbjct: 68 GPAKTVFVAGATGATGKRIVDQLLAKGFAVKAGVRDIDRARAAFPKNNPALQIVKADVTEGS-EKLAEAIGSDSEAVICATGFRPGW--DLFAPWKVDNFGTVNLVEACRKLGVNRFILISSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAEQHIR-RSGINYTIVRPGGLRNEPPKGNIVMEPEDTLYEGSISRDQVAEVAVEALNHPESSYKVVEIVAREDAPKRLFEELFGS 301
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|1091475449|ref|XP_018730109.1| (PREDICTED: uncharacterized protein At2g34460, chloroplastic isoform X2 [Eucalyptus grandis]) HSP 1 Score: 209.92 bits (533), Expect = 6.146e-63 Identity = 122/238 (51.26%), Postives = 149/238 (62.61%), Query Frame = 0 Query: 54 GGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKV-TDYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290 G K V V GATG TGKRIV+ LL KG V AGVRD+ + A K L ++ DV S LAE + +D AVICATG+ P DL P+KVDN GT L EA GV + +L+SS+L NG A GQ LN YI LN+FG LVAK AE+ I +G+++TIVRPGGLR PP+G + DTL+ GSISR VAEV V AL+ +S K+VEIV+ DAPK FE+ F S Sbjct: 65 GPAKTVFVAGATGATGKRIVDQLLAKGFAVKAGVRDIDRARAAFPKNNPALQIVKADVTEGS-EKLAEAIGSDSEAVICATGFRPGW--DLFAPWKVDNFGTVNLVEACRKLGVNRFILISSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAEQHIR-RSGINYTIVRPGGLRNEPPKGNIVMEPEDTLYEGSISRDQVAEVAVEALNHPESSYKVVEIVAREDAPKRLFEELFGS 298
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|802596154|ref|XP_012072089.1| (uncharacterized protein At2g34460, chloroplastic [Jatropha curcas] >gi|643730523|gb|KDP37955.1| hypothetical protein JCGZ_04598 [Jatropha curcas]) HSP 1 Score: 208.764 bits (530), Expect = 1.439e-62 Identity = 124/265 (46.79%), Postives = 159/265 (60.00%), Query Frame = 0 Query: 27 MSGLKQSGSPASKLSVSFFNAGNDKKVGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVT-DYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290 ++ +K GS A+ ++ + KV G K + V GATG +GKRIVE LL KG +V AGVRDL K + L ++ DV S A LAE + D AVICATG+ P +DL P++VDN GT L +A GV + +L+SS+L NG A GQ N YI LN+FG LVAK AE+ I +G+++TI+RPGGLR PP G V DTL+ GSISR VAEV V AL +S K+VEIVS DAPK ++ F S Sbjct: 42 LNSIKMQGSEATTEKITEIT---ETKVNGKKKIFVAGATGSSGKRIVEQLLAKGFEVKAGVRDLEKAKTTFSSDNPSLQIVKADVTEGS-AKLAEAIGGDSEAVICATGFRPG--LDLFAPWRVDNFGTVNLVDACRQLGVNRFILISSILVNGAAMGQIFNPAYIFLNVFGLTLVAKLQAEQYIR-RSGINYTIIRPGGLRNDPPTGNVVMEPEDTLYEGSISRDLVAEVAVEALVHPESSYKVVEIVSRADAPKRSYTDLFGS 299 The following BLAST results are available for this feature:
BLAST of EWM24255.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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