EWM24255.1, cds6436 (CDS) Nannochloropsis gaditana

Overview
NameEWM24255.1
Unique Namecds6436
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:537117..537992 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24255.1
Productputative chloroplastic-like protein
Orig transcript idgnl|cribi|Naga_100020g25.5388.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:537117..537992 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
Homology
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|585105646|gb|EWM24255.1| (putative chloroplastic-like protein [Nannochloropsis gaditana])

HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0
Query:    1 MKSISSSITITTYFVLFWLSVHTEAFMSGLKQSGSPASKLSVSFFNAGNDKKVGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFASA 291
            MKSISSSITITTYFVLFWLSVHTEAFMSGLKQSGSPASKLSVSFFNAGNDKKVGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFASA
Sbjct:    1 MKSISSSITITTYFVLFWLSVHTEAFMSGLKQSGSPASKLSVSFFNAGNDKKVGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFASA 291          
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|586715147|ref|XP_006847514.1| (uncharacterized protein At2g34460, chloroplastic [Amborella trichopoda] >gi|1173126962|ref|XP_020524760.1| uncharacterized protein At2g34460, chloroplastic [Amborella trichopoda] >gi|548850748|gb|ERN09095.1| hypothetical protein AMTR_s00014p00069090 [Amborella trichopoda])

HSP 1 Score: 212.616 bits (540), Expect = 2.371e-64
Identity = 121/238 (50.84%), Postives = 154/238 (64.71%), Query Frame = 0
Query:   51 KKVGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGF 288
            KK+ G K V V GATG TGK+IV+ LL KG +V AGVRD+   + +L    N +  ++ DV   S   LAE + D  AVICATG+ PS  +DL  P+KVDN GT  L +A    GV + +LVSS+L NG A GQ LN  YI+LN+FG  L+AK  AE+ I  ++G+++TI+RPGGLR  PP G +     DTLF GSISR  VAEV V AL    AS K+VEIVS  +APK +F + F
Sbjct:   43 KKLEGKK-VFVAGATGMTGKKIVDQLLSKGFQVRAGVRDVESAKSSLSSNQN-IQIVKADVTEGS-EKLAEAIGDAEAVICATGFRPS--LDLFAPWKVDNFGTVNLVDACRTVGVNRFILVSSILVNGAAMGQILNPAYIVLNIFGLTLIAKLQAEKYIR-SSGINFTIIRPGGLRNDPPSGSIAMESEDTLFEGSISREQVAEVAVEALRHPEASYKVVEIVSRTEAPKHSFAEMF 274          
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|116788805|gb|ABK25008.1| (unknown [Picea sitchensis])

HSP 1 Score: 211.46 bits (537), Expect = 7.716e-64
Identity = 131/286 (45.80%), Postives = 170/286 (59.44%), Query Frame = 0
Query:   12 TYFVLFWLSVHTEAFMSGLKQSGSPASKLSVSFFNAGNDKKVGGN-------KGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290
            +Y  +F LS  ++ F+      G+   +  V+F +   +K   G        K V V GATG TGKRIV  LL KG  V AGVRD+   +       N + F++ DV  +  A L+E + D  AVICATG+ PS  +D L P+KVDN GT  L +A  + GV K++L+SS+L NG A GQ  N  YI+LN+FG  LVAK  AE+ I   +G+D+TIVRPGGLR  PP G +     DTLF GSISR  VAEV V AL    AS K+VEIVS  +APK + ++ FAS
Sbjct:    5 SYPTIFRLS--SDNFIPRPSPLGARLRRCHVTFCSLKEEKDGQGEPNEQRTTKTVFVAGATGNTGKRIVTQLLSKGFNVKAGVRDVDSAKNNFPTDTN-IQFVKADVT-EGAAKLSEAIGDAEAVICATGFRPS--LDFLAPWKVDNFGTVNLVDACRSIGVNKLILISSILVNGAAIGQLFNPAYIVLNVFGLTLVAKLQAEQYIR-KSGIDFTIVRPGGLRNDPPSGNIVMQAEDTLFEGSISRDQVAEVAVEALLYPEASYKVVEIVSRENAPKKSLQELFAS 283          
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|460374620|ref|XP_004233108.1| (PREDICTED: uncharacterized protein At2g34460, chloroplastic [Solanum lycopersicum] >gi|723675747|ref|XP_010316925.1| PREDICTED: uncharacterized protein At2g34460, chloroplastic [Solanum lycopersicum])

HSP 1 Score: 210.305 bits (534), Expect = 8.137e-64
Identity = 122/239 (51.05%), Postives = 154/239 (64.44%), Query Frame = 0
Query:   53 VGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYS-AVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290
            +G  K + V GATG TGKRIVE LL KG  V AGVRD+ K +  L +A   L  ++ DV   S A LA+ + D S AVICATG+ PS   +LL P+KVDN GT  L +A    G+ + +L+SS+L NG A GQ  N  YIILN+ G VLVAK  AER I   +G+++TI+RPGGL+  PP+G +     DTLF GSISR  VAEV V AL    +  K+VEIV+  DAPK +FE+ F S
Sbjct:   14 IGQKKKIFVAGATGNTGKRIVEQLLAKGFAVKAGVRDVDKAKSVLPEANPFLQIVKTDVTEGS-AKLADAIGDDSNAVICATGFQPSW--NLLTPWKVDNFGTVNLVDACQKLGIDRFILISSILVNGAAMGQLFNPVYIILNVMGLVLVAKLQAERYIR-KSGINYTIIRPGGLKNDPPQGNIVMQPEDTLFRGSISRDQVAEVAVEALLHPESHYKVVEIVASTDAPKRSFEELFGS 248          
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|970010903|ref|XP_015066348.1| (PREDICTED: uncharacterized protein At2g34460, chloroplastic-like [Solanum pennellii])

HSP 1 Score: 210.305 bits (534), Expect = 8.406e-64
Identity = 122/239 (51.05%), Postives = 154/239 (64.44%), Query Frame = 0
Query:   53 VGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYS-AVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290
            +G  K + V GATG TGKRIVE LL KG  V AGVRD+ K +  L +A   L  ++ DV   S A LA+ + D S AVICATG+ PS   +LL P+KVDN GT  L +A    G+ + +L+SS+L NG A GQ  N  YIILN+ G VLVAK  AER I   +G+++TI+RPGGL+  PP+G +     DTLF GSISR  VAEV V AL    +  K+VEIV+  DAPK +FE+ F S
Sbjct:   14 IGQKKKIFVAGATGNTGKRIVEQLLAKGFAVKAGVRDVDKAKSVLPEANPFLQIVKADVTEGS-AKLADAIGDDSDAVICATGFQPSW--NLLTPWKVDNFGTVNLVDACQKLGIDRFILISSILVNGAAMGQLFNPVYIILNVMGLVLVAKLQAERYIR-KSGINYTIIRPGGLKNDPPQGNIVMQPEDTLFRGSISRDQVAEVAVEALLHPESHYKVVEIVASTDAPKRSFEELFGS 248          
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|1009106910|ref|XP_015876908.1| (PREDICTED: uncharacterized protein At2g34460, chloroplastic isoform X2 [Ziziphus jujuba])

HSP 1 Score: 211.46 bits (537), Expect = 1.326e-63
Identity = 123/244 (50.41%), Postives = 151/244 (61.89%), Query Frame = 0
Query:   48 GNDKKVGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYS-AVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290
              +  V G K + V GATG TGK+IVE LL KG  V AGVRD+ K +  L      L  ++ DV   S   LAE + D S AVICATG+ P    DL  P+KVDN GT  L EA    GV + VL+SS+L NG A GQ LN  YI LN+FG  LVAK  AE+ I   +G+++TIVRPGGLR  PP G V     DTL+ G+ISR  VAEV V AL    AS K+VEI++  DAPK ++++ FAS
Sbjct:   62 AEEANVTGKKKIFVAGATGSTGKKIVEQLLAKGYSVKAGVRDINKAKTTLSNGNPALQIVKADVTEGS-TKLAEAIGDDSEAVICATGFRPGW--DLFAPWKVDNFGTVNLVEACRRLGVNRFVLISSILVNGAAMGQILNPAYIFLNVFGLTLVAKLQAEKYIR-KSGINYTIVRPGGLRNEPPSGNVVMEAEDTLYEGTISRDQVAEVAVEALVHPEASYKVVEIIARADAPKRSYQELFAS 301          
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|1009106908|ref|XP_015876903.1| (PREDICTED: uncharacterized protein At2g34460, chloroplastic isoform X1 [Ziziphus jujuba])

HSP 1 Score: 211.846 bits (538), Expect = 1.673e-63
Identity = 123/244 (50.41%), Postives = 151/244 (61.89%), Query Frame = 0
Query:   48 GNDKKVGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVTDYS-AVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290
              +  V G K + V GATG TGK+IVE LL KG  V AGVRD+ K +  L      L  ++ DV   S   LAE + D S AVICATG+ P    DL  P+KVDN GT  L EA    GV + VL+SS+L NG A GQ LN  YI LN+FG  LVAK  AE+ I   +G+++TIVRPGGLR  PP G V     DTL+ G+ISR  VAEV V AL    AS K+VEI++  DAPK ++++ FAS
Sbjct:   74 AEEANVTGKKKIFVAGATGSTGKKIVEQLLAKGYSVKAGVRDINKAKTTLSNGNPALQIVKADVTEGS-TKLAEAIGDDSEAVICATGFRPGW--DLFAPWKVDNFGTVNLVEACRRLGVNRFVLISSILVNGAAMGQILNPAYIFLNVFGLTLVAKLQAEKYIR-KSGINYTIVRPGGLRNEPPSGNVVMEAEDTLYEGTISRDQVAEVAVEALVHPEASYKVVEIIARADAPKRSYQELFAS 313          
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|702344683|ref|XP_010056883.1| (PREDICTED: uncharacterized protein At2g34460, chloroplastic isoform X1 [Eucalyptus grandis])

HSP 1 Score: 209.92 bits (533), Expect = 6.090e-63
Identity = 122/238 (51.26%), Postives = 149/238 (62.61%), Query Frame = 0
Query:   54 GGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKV-TDYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290
            G  K V V GATG TGKRIV+ LL KG  V AGVRD+ +   A  K    L  ++ DV   S   LAE + +D  AVICATG+ P    DL  P+KVDN GT  L EA    GV + +L+SS+L NG A GQ LN  YI LN+FG  LVAK  AE+ I   +G+++TIVRPGGLR  PP+G +     DTL+ GSISR  VAEV V AL+   +S K+VEIV+  DAPK  FE+ F S
Sbjct:   68 GPAKTVFVAGATGATGKRIVDQLLAKGFAVKAGVRDIDRARAAFPKNNPALQIVKADVTEGS-EKLAEAIGSDSEAVICATGFRPGW--DLFAPWKVDNFGTVNLVEACRKLGVNRFILISSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAEQHIR-RSGINYTIVRPGGLRNEPPKGNIVMEPEDTLYEGSISRDQVAEVAVEALNHPESSYKVVEIVAREDAPKRLFEELFGS 301          
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|1091475449|ref|XP_018730109.1| (PREDICTED: uncharacterized protein At2g34460, chloroplastic isoform X2 [Eucalyptus grandis])

HSP 1 Score: 209.92 bits (533), Expect = 6.146e-63
Identity = 122/238 (51.26%), Postives = 149/238 (62.61%), Query Frame = 0
Query:   54 GGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKV-TDYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290
            G  K V V GATG TGKRIV+ LL KG  V AGVRD+ +   A  K    L  ++ DV   S   LAE + +D  AVICATG+ P    DL  P+KVDN GT  L EA    GV + +L+SS+L NG A GQ LN  YI LN+FG  LVAK  AE+ I   +G+++TIVRPGGLR  PP+G +     DTL+ GSISR  VAEV V AL+   +S K+VEIV+  DAPK  FE+ F S
Sbjct:   65 GPAKTVFVAGATGATGKRIVDQLLAKGFAVKAGVRDIDRARAAFPKNNPALQIVKADVTEGS-EKLAEAIGSDSEAVICATGFRPGW--DLFAPWKVDNFGTVNLVEACRKLGVNRFILISSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAEQHIR-RSGINYTIVRPGGLRNEPPKGNIVMEPEDTLYEGSISRDQVAEVAVEALNHPESSYKVVEIVAREDAPKRLFEELFGS 298          
BLAST of EWM24255.1 vs. NCBI_GenBank
Match: gi|802596154|ref|XP_012072089.1| (uncharacterized protein At2g34460, chloroplastic [Jatropha curcas] >gi|643730523|gb|KDP37955.1| hypothetical protein JCGZ_04598 [Jatropha curcas])

HSP 1 Score: 208.764 bits (530), Expect = 1.439e-62
Identity = 124/265 (46.79%), Postives = 159/265 (60.00%), Query Frame = 0
Query:   27 MSGLKQSGSPASKLSVSFFNAGNDKKVGGNKGVLVVGATGKTGKRIVEVLLKKGRKVTAGVRDLAKGEEALGKAGNKLSFLEVDVVADSPATLAEKVT-DYSAVICATGYSPSGPIDLLGPYKVDNMGTTKLAEALVAAGVPKMVLVSSLLTNGWAAGQGLNKNYIILNLFGGVLVAKNTAERKIMATTGLDWTIVRPGGLRESPPEGRVKYGKADTLFGGSISRYSVAEVCVAALDSKAASRKIVEIVSEGDAPKLTFEQGFAS 290
            ++ +K  GS A+   ++      + KV G K + V GATG +GKRIVE LL KG +V AGVRDL K +         L  ++ DV   S A LAE +  D  AVICATG+ P   +DL  P++VDN GT  L +A    GV + +L+SS+L NG A GQ  N  YI LN+FG  LVAK  AE+ I   +G+++TI+RPGGLR  PP G V     DTL+ GSISR  VAEV V AL    +S K+VEIVS  DAPK ++   F S
Sbjct:   42 LNSIKMQGSEATTEKITEIT---ETKVNGKKKIFVAGATGSSGKRIVEQLLAKGFEVKAGVRDLEKAKTTFSSDNPSLQIVKADVTEGS-AKLAEAIGGDSEAVICATGFRPG--LDLFAPWRVDNFGTVNLVDACRQLGVNRFILISSILVNGAAMGQIFNPAYIFLNVFGLTLVAKLQAEQYIR-RSGINYTIIRPGGLRNDPPTGNVVMEPEDTLYEGSISRDLVAEVAVEALVHPESSYKVVEIVSRADAPKRSYTDLFGS 299          
The following BLAST results are available for this feature:
BLAST of EWM24255.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105646|gb|EWM24255.1|0.000e+0100.00putative chloroplastic-like protein [Nannochlorops... [more]
gi|586715147|ref|XP_006847514.1|2.371e-6450.84uncharacterized protein At2g34460, chloroplastic [... [more]
gi|116788805|gb|ABK25008.1|7.716e-6445.80unknown [Picea sitchensis][more]
gi|460374620|ref|XP_004233108.1|8.137e-6451.05PREDICTED: uncharacterized protein At2g34460, chlo... [more]
gi|970010903|ref|XP_015066348.1|8.406e-6451.05PREDICTED: uncharacterized protein At2g34460, chlo... [more]
gi|1009106910|ref|XP_015876908.1|1.326e-6350.41PREDICTED: uncharacterized protein At2g34460, chlo... [more]
gi|1009106908|ref|XP_015876903.1|1.673e-6350.41PREDICTED: uncharacterized protein At2g34460, chlo... [more]
gi|702344683|ref|XP_010056883.1|6.090e-6351.26PREDICTED: uncharacterized protein At2g34460, chlo... [more]
gi|1091475449|ref|XP_018730109.1|6.146e-6351.26PREDICTED: uncharacterized protein At2g34460, chlo... [more]
gi|802596154|ref|XP_012072089.1|1.439e-6246.79uncharacterized protein At2g34460, chloroplastic [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6452rna6452Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications