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Properties
| Property Name | Value |
|---|
| Product | ribosomal rna processing protein 1 |
| Orig transcript id | gnl|cribi|Naga_100020g26.5400.mrna |
| Orig protein id | gnl|cribi|Naga_100020g26.5400 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:534562..536988 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6451 ID=rna6451|Name=rna6451|organism=Nannochloropsis gaditana|type=mRNA|length=1239bp
TTTGGCTCCGCAATGTTTTCAGAAAGCAAGCCTGTAAAGATACTAGGCCC
GTCCCGTGGCTCCCTCTGGGCAAGCCGTCTCGCTTGTTCCGTGCACCCGC
CCATGGCCCGCCCGCTCACTTCCATTCTCGCAGGGATCCAAACCAAGCAA
CGCCGTGGACAATGGGAAGCATGATGGCCGCCCTCTGTACTGTCTCCACA
TTTGTGGCAACTTTATTCTGTGTTTTCCTTATCGCTTCAGCAACGGAGGT
GGTAGAGTTAACGGACTCAAACTTCGAGCATCTAACTCAAGCATCCACCG
GCGCTACGACGGGTGATTGGCTTGTTGCTTTCTCAGCACCTTGGTGCGGG
CATTGCAAGCATCTTGTGCCTACTTGGGAGGAGGTTGCCATGGAGCTCAA
GGGTGAAGTGAACGTTGCCAAGGTCGACGCTATTGCTAACTCAAATTTAG
CATCACGTTTCAGCATTCGGGCCTTCCCTATGCTGAAATTCTTCCATCAA
GGCAGCATGTACGACTACCGGGGTCCCCGAAACGCAGAGCAGCTTTTAGA
GTTCGCGCGTGGTGGCTATAAAAACATGCCATCGGCCCCTGTCCCCGTTC
CTCCGACGTTTCTGGCGAAAATCAAATTGCAACTGGACGAGGTAACAGAG
GGCCTACAGGCTCTGTGTTATCAGATTGTGAGGGAGGCGCAGGCGGTCTA
CAAAGGAGAAAGGCCCATAGATACTCCGTTTATCGTGATGATGACTGTGA
TTTTTTTATTCTTTGGTGTCATCGTCTTAAGCTTCGCTGCTTTATTCACT
GGCCCTGTGGTTCCCAATGGAAAGAGAGATAAACAGAGTACGAAGAAAAA
CAATTGAGAAATTGGGTTTTTGGGGAACATTTTTCGTGCTTTGAAAAGAG
ATGTGTGCAGCACGTTTTCTAAAAAGACTATGTCGACGGACTAGAGATAT
AACCGTTAGGTTATTATAAAACGGATATAGCTTGAATGTGGGTGCATAGA
CTAATAAGGTGCGCTCTATGCTTGTTTAATAGATGCATTAATTTGATCGC
TGGAGTCAACTGATGAAATTTTAACCTGATTCTTTTGCGCGCCTTTCAAT
GGATTAGGACAGCATCTTGTTGCGGGGGGGATGGGTTGAAAGAGAAGACC
AAACAATGTTCTGCAGTATCCCGAAGACTTTTGACTTTGTTCTTTTGTTC
GGGCAGTATGAAGCGCAGATATGCTGCAGATCAACCTAA back to topprotein sequence of rna6451 >rna6451-protein ID=rna6451-protein|Name=rna6451|organism=Nannochloropsis gaditana|type=polypeptide|length=703bp
MGLMGRGGSSTRSTGKIRVPASTQVKKANDLCDPPFNEEVTAELASSGLE
GSINGGKMLPEEEKEIIGFAKRLAANEKRERDQALKRLEVWMAKHKNLSE
KDFLKIWKGLFYCMWMSDRARVQQDLGGAISRLVHCFGRDSGRAHLFVGA
FYRTVRREWPGLDQHRLDKFYSFMRRMLRECLRFAQQRAWSAEALVSVVF
PLNAEVLQQPWPNGLRLHACDLILPELARVGGGELTTAQALEVLQPFLVA
MATSADRVVAERARARVLLDLVASKEAEGVEAGGKEDVDAVSCMAGVDME
AVQATVFGLASSSATRERYRAALYEAHKAFQKLTGKKRADPAKAIRVSFP
VVEAGKGVLMGPQGTERGGGGGEAGDGEEGESCIDSGNGVKKRKAHAVLA
EDRMKRERTGTVDSKTLSRGKEAVDLRDSKVLGATVTEKAVKGKAGVKKM
MSMQKPAEKDGKSLEGMTQPTAKKKSIDLSSQKSKGESSASKRNADEEKA
IAKSVTAKRLKADILGATGGNANPKRKSEGDDAPSEAARGSIAHKLSARK
VEAETNKAEEASHLPAMRHSQAPGKANKKKDATASSTAPSPSNATTGKTE
AAFIPSKTFTGGKPGYVYKKDRQGLGYYLDVGQRGGKKVRWGKVQVKLFN
KDASPADGKRKTVSFMRESSGRVRGKTRVAGDKMGRGKGGGGPNNRRRAV
SYF back to topmRNA from alignment at CM002468.1:534562..536988+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6451 ID=rna6451|Name=rna6451|organism=Nannochloropsis gaditana|type=mRNA|length=2427bp|location=Sequence derived from alignment at CM002468.1:534562..536988+ (Nannochloropsis gaditana)
AGCGAGACGGCTTGCCCAGAGGGAGCCACGGGACGGGCCTAGTATCTTTA
CAGGCTTGCTTTCTGAAAACATTGCGGAGCCAAAATTAGACGTGAGACCC
ACACTAATGCGCTTATTACCTAATATGTAGTGCAGGGATCTCATCGAGGC
ACTGTATTTGCAGGTGCGTGCGGGCGGGCCGCATCAATTCAATCGTCCGC
GTCGCATGGGGCTGATGGGTCGTGGCGGGAGCAGCACAAGGAGCACAGGC
AAAATTCGTGTCCCCGCTTCTACGCAAGTCAAAAAAGCTAATGACCTTTG
TGACCCCCCGTTTAATGAAGAGGTTACCGCAGAATTGGCGTCATCAGGGC
TAGAAGGGAGCATTAATGGTGGTAAGATGCTaccggaggaagagaaagag
ataATCGGCTTTGCCAAGAGGCTGGCGGCAAACgagaagcgggagagaga
TCAAGCCTTAAAACGCCTGGAGGTCTGGATGGCGAAACACAAGAACCTAT
CAGAGAAGGACTTTTTGAAGATTTGGAAAGGTTTGTTCTACTGCATGTGG
ATGTCGGACAGAGCTCGAGTGCAACAGGACTTGGGAGGAGCCATCTCTCG
CCTCGTCCACTGCTTTGGGAGAGACTCTGGCCGTGCCCATCTGTTTGTCG
GAGCTTTCTATCGCACTGTGCGCCGCGAATGGCCCGGTTTAGATCAGCAT
CGGTTGGATAAGTTCTATTCCTTCATGCGTCGAATGCTGCGAGAGTGTCT
CAGATTCGCCCAGCAGCGTGCTTGGTCTGCGGAAGCTCTAGTATCCGTTG
TCTTTCCCCTGAATGCAGAGGTGCTTCAGCAGCCCTGGCCCAATGGCTTG
CGTTTACATGCTTGTGATCTCATTCTCCCTGAATTGGCACGcgttggggg
aggagagctgACGACTGCGCAGGCATTGGAGGTCCTCCAGCCCTTTCTGG
TGGCCATGGCCACGTCAGCGGACAGGGTCGTCGCAGAACGCGCGAGGGCA
CGGGTCCTGCTGGATCTAGTTGCATcgaaagaggcggagggggttgAAGC
CGGTGGTAAGGAAGATGTGGATGCCGTGTCCTGcatggcgggcgtggaca
tGGAGGCTGTGCAAGCAACTGTATTCGGACTGGCCTCTTCGTCCGCCACA
AGAGAGAGGTACCGGGCGGCGCTCTATGAAGCTCACAAAGCTTTTCAGAA
GCTGACAGGCAAAAAGAGGGCAGATCCTGCCAAGGCCATCCGTGTCTCTT
TCcccgtggtggaggctggCAAGGGGGTCTTGATGGGGCCGCAGGGGACG
GAacgcgggggcggaggcggcgaggccggggatggagaggaaggagagag
ctgCATCGACTCTGGGAATGGCGTCAAGAAACGGAAGGCACACGCGGTGC
TTGCCGAGGATAGGATGAAGCGTGAGAGGACGGGTACCGTGGACTCCAAG
ACTTTgtcgaggggaaaagaagctgTTGATCTTAGAGACTCAAAGGTGCT
TGGAGCAACAGTGACTGAAAAGGCagtgaaaggaaaagcaggtgTCAAAA
AAATGATGTCCATGCAAAAGCCAGCggagaaggatggaaaaTCTCTCGAG
GGTATGACTCAGCCGACGGCGAAAAAGAAATCCATTGACCTTAGCAGCCA
AAAAAGCAAGGGCGAAAGTAGCGCGAGCAAACGGAATGCAGATGAAGAGA
AGGCAATCGCCAAGTCAGTGACGGCCAAAAGATTGAAGGCGGACATCCTC
GGCGCGACAGGCGGCAACGCAAACcccaagaggaagagcgagggtGATGA
CGCCCCGTCCGAGGCAGCCAGGGGTTCAATAGCTCATAAATTGTCCGCGA
GGAAGGTTGAGGCGGAAACCaacaaggcggaggaggccagcCATTTGCCA
GCGATGCGGCACTCTCAGGCCCCGGGGAAAGCCAATAAAAAAAAGGATGC
CACGGCATCTTCCACCGCACCCTCACCTTCAAATGCCACGACAGGGAAAA
CAGAAGCAGCTTTCATTCCATCCAAGACCTTCACAGGAGGGAAGCCCGGT
TATGTGTACAAGAAAGACCGCCAGGGTCTGGGCTACTACTTGGACGTCGG
TcagcgaggaggcaagaaggtTCGATGGGGCAAAGTGCAAGTCAAGCTTT
TCAACAAGGACGCCTCTCCTGCcgacggaaagaggaagacagtGTCGTTT
ATGAGGGAAAGCTCGGGCAGAGTCAGGGGCAAGACGCGGGTGGCAGGGGA
CAAGATGGGCCGTGgcaagggcggcgggggcccgAACAACCGACGCAGGG
CCGTCTCATACTTCTGAAATCTAATTGGTGCGAGCGAGGTTAATACATGT
GCCAACAGCTGTAATGTCGGAAAGTTTTGTTCCTGTAGGAAGTCTTGCGT
AAAGAAGGAGTCTAGAGACCGGAATCT back to topCoding sequence (CDS) from alignment at CM002468.1:534562..536988+ >rna6451 ID=rna6451|Name=rna6451|organism=Nannochloropsis gaditana|type=CDS|length=2112bp|location=Sequence derived from alignment at CM002468.1:534562..536988+ (Nannochloropsis gaditana)
ATGGGGCTGATGGGTCGTGGCGGGAGCAGCACAAGGAGCACAGGCAAAAT
TCGTGTCCCCGCTTCTACGCAAGTCAAAAAAGCTAATGACCTTTGTGACC
CCCCGTTTAATGAAGAGGTTACCGCAGAATTGGCGTCATCAGGGCTAGAA
GGGAGCATTAATGGTGGTAAGATGCTaccggaggaagagaaagagataAT
CGGCTTTGCCAAGAGGCTGGCGGCAAACgagaagcgggagagagaTCAAG
CCTTAAAACGCCTGGAGGTCTGGATGGCGAAACACAAGAACCTATCAGAG
AAGGACTTTTTGAAGATTTGGAAAGGTTTGTTCTACTGCATGTGGATGTC
GGACAGAGCTCGAGTGCAACAGGACTTGGGAGGAGCCATCTCTCGCCTCG
TCCACTGCTTTGGGAGAGACTCTGGCCGTGCCCATCTGTTTGTCGGAGCT
TTCTATCGCACTGTGCGCCGCGAATGGCCCGGTTTAGATCAGCATCGGTT
GGATAAGTTCTATTCCTTCATGCGTCGAATGCTGCGAGAGTGTCTCAGAT
TCGCCCAGCAGCGTGCTTGGTCTGCGGAAGCTCTAGTATCCGTTGTCTTT
CCCCTGAATGCAGAGGTGCTTCAGCAGCCCTGGCCCAATGGCTTGCGTTT
ACATGCTTGTGATCTCATTCTCCCTGAATTGGCACGcgttgggggaggag
agctgACGACTGCGCAGGCATTGGAGGTCCTCCAGCCCTTTCTGGTGGCC
ATGGCCACGTCAGCGGACAGGGTCGTCGCAGAACGCGCGAGGGCACGGGT
CCTGCTGGATCTAGTTGCATcgaaagaggcggagggggttgAAGCCGGTG
GTAAGGAAGATGTGGATGCCGTGTCCTGcatggcgggcgtggacatGGAG
GCTGTGCAAGCAACTGTATTCGGACTGGCCTCTTCGTCCGCCACAAGAGA
GAGGTACCGGGCGGCGCTCTATGAAGCTCACAAAGCTTTTCAGAAGCTGA
CAGGCAAAAAGAGGGCAGATCCTGCCAAGGCCATCCGTGTCTCTTTCccc
gtggtggaggctggCAAGGGGGTCTTGATGGGGCCGCAGGGGACGGAacg
cgggggcggaggcggcgaggccggggatggagaggaaggagagagctgCA
TCGACTCTGGGAATGGCGTCAAGAAACGGAAGGCACACGCGGTGCTTGCC
GAGGATAGGATGAAGCGTGAGAGGACGGGTACCGTGGACTCCAAGACTTT
gtcgaggggaaaagaagctgTTGATCTTAGAGACTCAAAGGTGCTTGGAG
CAACAGTGACTGAAAAGGCagtgaaaggaaaagcaggtgTCAAAAAAATG
ATGTCCATGCAAAAGCCAGCggagaaggatggaaaaTCTCTCGAGGGTAT
GACTCAGCCGACGGCGAAAAAGAAATCCATTGACCTTAGCAGCCAAAAAA
GCAAGGGCGAAAGTAGCGCGAGCAAACGGAATGCAGATGAAGAGAAGGCA
ATCGCCAAGTCAGTGACGGCCAAAAGATTGAAGGCGGACATCCTCGGCGC
GACAGGCGGCAACGCAAACcccaagaggaagagcgagggtGATGACGCCC
CGTCCGAGGCAGCCAGGGGTTCAATAGCTCATAAATTGTCCGCGAGGAAG
GTTGAGGCGGAAACCaacaaggcggaggaggccagcCATTTGCCAGCGAT
GCGGCACTCTCAGGCCCCGGGGAAAGCCAATAAAAAAAAGGATGCCACGG
CATCTTCCACCGCACCCTCACCTTCAAATGCCACGACAGGGAAAACAGAA
GCAGCTTTCATTCCATCCAAGACCTTCACAGGAGGGAAGCCCGGTTATGT
GTACAAGAAAGACCGCCAGGGTCTGGGCTACTACTTGGACGTCGGTcagc
gaggaggcaagaaggtTCGATGGGGCAAAGTGCAAGTCAAGCTTTTCAAC
AAGGACGCCTCTCCTGCcgacggaaagaggaagacagtGTCGTTTATGAG
GGAAAGCTCGGGCAGAGTCAGGGGCAAGACGCGGGTGGCAGGGGACAAGA
TGGGCCGTGgcaagggcggcgggggcccgAACAACCGACGCAGGGCCGTC
TCATACTTCTGA back to top
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