EWM24267.1, cds6435 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24267.1 vs. NCBI_GenBank
Match: gi|585105658|gb|EWM24267.1| (ribosomal rna processing protein 1 [Nannochloropsis gaditana]) HSP 1 Score: 1430.23 bits (3701), Expect = 0.000e+0 Identity = 703/703 (100.00%), Postives = 703/703 (100.00%), Query Frame = 0
Query: 1 MGLMGRGGSSTRSTGKIRVPASTQVKKANDLCDPPFNEEVTAELASSGLEGSINGGKMLPEEEKEIIGFAKRLAANEKRERDQALKRLEVWMAKHKNLSEKDFLKIWKGLFYCMWMSDRARVQQDLGGAISRLVHCFGRDSGRAHLFVGAFYRTVRREWPGLDQHRLDKFYSFMRRMLRECLRFAQQRAWSAEALVSVVFPLNAEVLQQPWPNGLRLHACDLILPELARVGGGELTTAQALEVLQPFLVAMATSADRVVAERARARVLLDLVASKEAEGVEAGGKEDVDAVSCMAGVDMEAVQATVFGLASSSATRERYRAALYEAHKAFQKLTGKKRADPAKAIRVSFPVVEAGKGVLMGPQGTERGGGGGEAGDGEEGESCIDSGNGVKKRKAHAVLAEDRMKRERTGTVDSKTLSRGKEAVDLRDSKVLGATVTEKAVKGKAGVKKMMSMQKPAEKDGKSLEGMTQPTAKKKSIDLSSQKSKGESSASKRNADEEKAIAKSVTAKRLKADILGATGGNANPKRKSEGDDAPSEAARGSIAHKLSARKVEAETNKAEEASHLPAMRHSQAPGKANKKKDATASSTAPSPSNATTGKTEAAFIPSKTFTGGKPGYVYKKDRQGLGYYLDVGQRGGKKVRWGKVQVKLFNKDASPADGKRKTVSFMRESSGRVRGKTRVAGDKMGRGKGGGGPNNRRRAVSYF 703
MGLMGRGGSSTRSTGKIRVPASTQVKKANDLCDPPFNEEVTAELASSGLEGSINGGKMLPEEEKEIIGFAKRLAANEKRERDQALKRLEVWMAKHKNLSEKDFLKIWKGLFYCMWMSDRARVQQDLGGAISRLVHCFGRDSGRAHLFVGAFYRTVRREWPGLDQHRLDKFYSFMRRMLRECLRFAQQRAWSAEALVSVVFPLNAEVLQQPWPNGLRLHACDLILPELARVGGGELTTAQALEVLQPFLVAMATSADRVVAERARARVLLDLVASKEAEGVEAGGKEDVDAVSCMAGVDMEAVQATVFGLASSSATRERYRAALYEAHKAFQKLTGKKRADPAKAIRVSFPVVEAGKGVLMGPQGTERGGGGGEAGDGEEGESCIDSGNGVKKRKAHAVLAEDRMKRERTGTVDSKTLSRGKEAVDLRDSKVLGATVTEKAVKGKAGVKKMMSMQKPAEKDGKSLEGMTQPTAKKKSIDLSSQKSKGESSASKRNADEEKAIAKSVTAKRLKADILGATGGNANPKRKSEGDDAPSEAARGSIAHKLSARKVEAETNKAEEASHLPAMRHSQAPGKANKKKDATASSTAPSPSNATTGKTEAAFIPSKTFTGGKPGYVYKKDRQGLGYYLDVGQRGGKKVRWGKVQVKLFNKDASPADGKRKTVSFMRESSGRVRGKTRVAGDKMGRGKGGGGPNNRRRAVSYF
Sbjct: 1 MGLMGRGGSSTRSTGKIRVPASTQVKKANDLCDPPFNEEVTAELASSGLEGSINGGKMLPEEEKEIIGFAKRLAANEKRERDQALKRLEVWMAKHKNLSEKDFLKIWKGLFYCMWMSDRARVQQDLGGAISRLVHCFGRDSGRAHLFVGAFYRTVRREWPGLDQHRLDKFYSFMRRMLRECLRFAQQRAWSAEALVSVVFPLNAEVLQQPWPNGLRLHACDLILPELARVGGGELTTAQALEVLQPFLVAMATSADRVVAERARARVLLDLVASKEAEGVEAGGKEDVDAVSCMAGVDMEAVQATVFGLASSSATRERYRAALYEAHKAFQKLTGKKRADPAKAIRVSFPVVEAGKGVLMGPQGTERGGGGGEAGDGEEGESCIDSGNGVKKRKAHAVLAEDRMKRERTGTVDSKTLSRGKEAVDLRDSKVLGATVTEKAVKGKAGVKKMMSMQKPAEKDGKSLEGMTQPTAKKKSIDLSSQKSKGESSASKRNADEEKAIAKSVTAKRLKADILGATGGNANPKRKSEGDDAPSEAARGSIAHKLSARKVEAETNKAEEASHLPAMRHSQAPGKANKKKDATASSTAPSPSNATTGKTEAAFIPSKTFTGGKPGYVYKKDRQGLGYYLDVGQRGGKKVRWGKVQVKLFNKDASPADGKRKTVSFMRESSGRVRGKTRVAGDKMGRGKGGGGPNNRRRAVSYF 703
BLAST of EWM24267.1 vs. NCBI_GenBank
Match: gi|970658344|gb|KUF96119.1| (hypothetical protein AM588_10008175 [Phytophthora nicotianae]) HSP 1 Score: 195.667 bits (496), Expect = 1.762e-50 Identity = 105/270 (38.89%), Postives = 156/270 (57.78%), Query Frame = 0
Query: 69 FAKRLAANEKRERDQALKRLEVWMAKHKNLSEKDFLKIWKGLFYCMWMSDRARVQQDLGGAISRLVHCFGRDSGRAHLFVGAFYRTVRREWPGLDQHRLDKFYSFMRRMLRECLRFAQQRAWSAEALVSVVFPLNAEVLQQPWPNGLRLHACDLILPELARVGGGELTTAQALEVLQPFLVAMATSADRVVAERARARVLLDLVA--------SKEAEGVEAGGKEDVDAVSCMAGVDMEAVQATVFGLASSSATRERYRAALYEAHKAF 330
F + LA EK+ RD+ALK+L V++ K K +E ++ K+WK LFYCMWMSD+ VQ++L ++ LVH ++ A FV +F+RT+ REW GLD RLDKFYS +R+ +RE + + + W + + V L+ EV+ Q PNGLR+H DL L E+ G E+TT + +L+PF +++ D+ V +R R V D++A KE E ++ + VD+ VQ +F +AS+ T ER RAALY +K F
Sbjct: 8 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRIP-NAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFVRETVVLLRDQDWEEDLVQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDMLAKYKFGPQSEKEKSDDEEETDDEEEEDKVFEQVDVAQVQHRIFAIASADDTAERNRAALYTLYKKF 275
BLAST of EWM24267.1 vs. NCBI_GenBank
Match: gi|970629948|gb|KUF77047.1| (Ribosomal RNA processing protein 1 B [Phytophthora nicotianae] >gi|970640114|gb|KUF82826.1| Ribosomal RNA processing protein 1 B [Phytophthora nicotianae]) HSP 1 Score: 195.667 bits (496), Expect = 1.780e-50 Identity = 105/270 (38.89%), Postives = 156/270 (57.78%), Query Frame = 0
Query: 69 FAKRLAANEKRERDQALKRLEVWMAKHKNLSEKDFLKIWKGLFYCMWMSDRARVQQDLGGAISRLVHCFGRDSGRAHLFVGAFYRTVRREWPGLDQHRLDKFYSFMRRMLRECLRFAQQRAWSAEALVSVVFPLNAEVLQQPWPNGLRLHACDLILPELARVGGGELTTAQALEVLQPFLVAMATSADRVVAERARARVLLDLVA--------SKEAEGVEAGGKEDVDAVSCMAGVDMEAVQATVFGLASSSATRERYRAALYEAHKAF 330
F + LA EK+ RD+ALK+L V++ K K +E ++ K+WK LFYCMWMSD+ VQ++L ++ LVH ++ A FV +F+RT+ REW GLD RLDKFYS +R+ +RE + + + W + + V L+ EV+ Q PNGLR+H DL L E+ G E+TT + +L+PF +++ D+ V +R R V D++A KE E ++ + VD+ VQ +F +AS+ T ER RAALY +K F
Sbjct: 8 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRIP-NAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFVRETVVLLRDQDWEEDLVQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDMLAKYKFGPQSEKEKSDDEEETDDEEEEDKVFEQVDVAKVQHRIFAIASADDTAERNRAALYTLYKKF 275
BLAST of EWM24267.1 vs. NCBI_GenBank
Match: gi|568047239|gb|ETM44323.1| (hypothetical protein L914_10428 [Phytophthora parasitica]) HSP 1 Score: 194.897 bits (494), Expect = 6.732e-50 Identity = 106/274 (38.69%), Postives = 158/274 (57.66%), Query Frame = 0
Query: 69 FAKRLAANEKRERDQALKRLEVWMAKHKNLSEKDFLKIWKGLFYCMWMSDRARVQQDLGGAISRLVHCFGRDSGRAHLFVGAFYRTVRREWPGLDQHRLDKFYSFMRRMLRECLRFAQQRAWSAEALVSVVFPLNAEVLQQPWPNGLRLHACDLILPELARVGGGELTTAQALEVLQPFLVAMATSADRVVAERARARVLLDLVA--------SKEAEGVEAGGKEDVDAVSCMAGVDMEAVQATVFGLASSSATRERYRAALYEAHKAFQKLT 334
F + LA EK+ RD+ALK+L V++ K K +E ++ K+WK LFYCMWMSD+ VQ++L ++ LVH ++ A FV +F+RT+ REW GLD RLDKFYS +R+ +RE + + + W + + V L+ EV+ Q PNGLR+H DL L E+ G E+TT + +L+PF +++ D+ V +R R V D++A KE E ++ + VD+ VQ +F +AS+ T ER RAALY +K F +T
Sbjct: 64 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRIP-NAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFIRETVVLLRDQDWEEDLIQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDMLAKYKFGPQSEKEKSDDEEETDDEEEEDKVFEQVDVAKVQHRIFAIASADDTAERNRAALYTLYKKFFTVT 335
BLAST of EWM24267.1 vs. NCBI_GenBank
Match: gi|570325180|gb|ETO73128.1| (hypothetical protein F444_10910 [Phytophthora parasitica P1976]) HSP 1 Score: 194.897 bits (494), Expect = 6.934e-50 Identity = 106/274 (38.69%), Postives = 158/274 (57.66%), Query Frame = 0
Query: 69 FAKRLAANEKRERDQALKRLEVWMAKHKNLSEKDFLKIWKGLFYCMWMSDRARVQQDLGGAISRLVHCFGRDSGRAHLFVGAFYRTVRREWPGLDQHRLDKFYSFMRRMLRECLRFAQQRAWSAEALVSVVFPLNAEVLQQPWPNGLRLHACDLILPELARVGGGELTTAQALEVLQPFLVAMATSADRVVAERARARVLLDLVA--------SKEAEGVEAGGKEDVDAVSCMAGVDMEAVQATVFGLASSSATRERYRAALYEAHKAFQKLT 334
F + LA EK+ RD+ALK+L V++ K K +E ++ K+WK LFYCMWMSD+ VQ++L ++ LVH ++ A FV +F+RT+ REW GLD RLDKFYS +R+ +RE + + + W + + V L+ EV+ Q PNGLR+H DL L E+ G E+TT + +L+PF +++ D+ V +R R V D++A KE E ++ + VD+ VQ +F +AS+ T ER RAALY +K F +T
Sbjct: 64 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRIP-NAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFVRETVVLLRDQDWEEDLIQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDMLAKYKFGPQSEKEKSDDEEETDDEEEEDKVFEQVDVAKVQHRIFAIASADDTAERNRAALYTLYKKFFTVT 335
BLAST of EWM24267.1 vs. NCBI_GenBank
Match: gi|567958872|gb|ETK84456.1| (hypothetical protein L915_10580 [Phytophthora parasitica] >gi|567987596|gb|ETL37894.1| hypothetical protein L916_10471 [Phytophthora parasitica] >gi|570949020|gb|ETP14277.1| hypothetical protein F441_10769 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 194.126 bits (492), Expect = 1.239e-49 Identity = 105/270 (38.89%), Postives = 156/270 (57.78%), Query Frame = 0
Query: 69 FAKRLAANEKRERDQALKRLEVWMAKHKNLSEKDFLKIWKGLFYCMWMSDRARVQQDLGGAISRLVHCFGRDSGRAHLFVGAFYRTVRREWPGLDQHRLDKFYSFMRRMLRECLRFAQQRAWSAEALVSVVFPLNAEVLQQPWPNGLRLHACDLILPELARVGGGELTTAQALEVLQPFLVAMATSADRVVAERARARVLLDLVA--------SKEAEGVEAGGKEDVDAVSCMAGVDMEAVQATVFGLASSSATRERYRAALYEAHKAF 330
F + LA EK+ RD+ALK+L V++ K K +E ++ K+WK LFYCMWMSD+ VQ++L ++ LVH ++ A FV +F+RT+ REW GLD RLDKFYS +R+ +RE + + + W + + V L+ EV+ Q PNGLR+H DL L E+ G E+TT + +L+PF +++ D+ V +R R V D++A KE E ++ + VD+ VQ +F +AS+ T ER RAALY +K F
Sbjct: 64 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRIP-NAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFIRETVVLLRDQDWEEDLVQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDMLAKYKFGPQSEKEKSDDEEETDDEEEEDKVFEQVDVAKVQHRIFAIASADDTAERNRAALYTLYKKF 331
BLAST of EWM24267.1 vs. NCBI_GenBank
Match: gi|570982150|gb|ETP42349.1| (hypothetical protein F442_10744 [Phytophthora parasitica P10297]) HSP 1 Score: 194.126 bits (492), Expect = 1.327e-49 Identity = 103/270 (38.15%), Postives = 155/270 (57.41%), Query Frame = 0
Query: 69 FAKRLAANEKRERDQALKRLEVWMAKHKNLSEKDFLKIWKGLFYCMWMSDRARVQQDLGGAISRLVHCFGRDSGRAHLFVGAFYRTVRREWPGLDQHRLDKFYSFMRRMLRECLRFAQQRAWSAEALVSVVFPLNAEVLQQPWPNGLRLHACDLILPELARVGGGELTTAQALEVLQPFLVAMATSADRVVAERARARVLLDLVASKE--------AEGVEAGGKEDVDAVSCMAGVDMEAVQATVFGLASSSATRERYRAALYEAHKAF 330
F + LA EK+ RD+ALK+L V++ K K +E ++ K+WK LFYCMWMSD+ VQ++L ++ LVH ++ A FV +F+RT+ REW GLD RLDKFYS +R+ +RE + + + W + + V L+ EV+ Q PNGLR+H DL L E+ G E+TT + +L+PF +++ D+ V +R R V D++A + E ++ + VD+ VQ +F +AS+ T ER RAALY +K F
Sbjct: 64 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRIP-NAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFVRETVVLLRDQDWEEDLVQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDMLAKHKFGPQSEKEKSDDEEETDDEEEEDKVFEQVDVAKVQHRIFAIASADDTAERNRAALYTLYKKF 331
BLAST of EWM24267.1 vs. NCBI_GenBank
Match: gi|675195815|ref|XP_008906792.1| (hypothetical protein PPTG_12501 [Phytophthora parasitica INRA-310] >gi|568093189|gb|ETN07988.1| hypothetical protein PPTG_12501 [Phytophthora parasitica INRA-310]) HSP 1 Score: 194.126 bits (492), Expect = 1.367e-49 Identity = 106/274 (38.69%), Postives = 158/274 (57.66%), Query Frame = 0
Query: 69 FAKRLAANEKRERDQALKRLEVWMAKHKNLSEKDFLKIWKGLFYCMWMSDRARVQQDLGGAISRLVHCFGRDSGRAHLFVGAFYRTVRREWPGLDQHRLDKFYSFMRRMLRECLRFAQQRAWSAEALVSVVFPLNAEVLQQPWPNGLRLHACDLILPELARVGGGELTTAQALEVLQPFLVAMATSADRVVAERARARVLLDLVA--------SKEAEGVEAGGKEDVDAVSCMAGVDMEAVQATVFGLASSSATRERYRAALYEAHKAFQKLT 334
F + LA EK+ RD+ALK+L V++ K K +E ++ K+WK LFYCMWMSD+ VQ++L ++ LVH ++ A FV +F+RT+ REW GLD RLDKFYS +R+ +RE + + + W + + V L+ EV+ Q PNGLR+H DL L E+ G E+TT + +L+PF +++ D+ V +R R V D++A KE E ++ + VD+ VQ +F +AS+ T ER RAALY +K F +T
Sbjct: 64 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRIP-NAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFIRETVVLLRDQDWEEDLVQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDMLAKYKFGPQSEKEKSDDEEETDDEEEEDKVFEQVDVAQVQHRIFAIASADDTAERNRAALYTLYKKFFTVT 335
BLAST of EWM24267.1 vs. NCBI_GenBank
Match: gi|566021555|gb|ETI44466.1| (hypothetical protein F443_10843 [Phytophthora parasitica P1569]) HSP 1 Score: 194.126 bits (492), Expect = 1.471e-49 Identity = 105/270 (38.89%), Postives = 156/270 (57.78%), Query Frame = 0
Query: 69 FAKRLAANEKRERDQALKRLEVWMAKHKNLSEKDFLKIWKGLFYCMWMSDRARVQQDLGGAISRLVHCFGRDSGRAHLFVGAFYRTVRREWPGLDQHRLDKFYSFMRRMLRECLRFAQQRAWSAEALVSVVFPLNAEVLQQPWPNGLRLHACDLILPELARVGGGELTTAQALEVLQPFLVAMATSADRVVAERARARVLLDLVA--------SKEAEGVEAGGKEDVDAVSCMAGVDMEAVQATVFGLASSSATRERYRAALYEAHKAF 330
F + LA EK+ RD+ALK+L V++ K K +E ++ K+WK LFYCMWMSD+ VQ++L ++ LVH ++ A FV +F+RT+ REW GLD RLDKFYS +R+ +RE + + + W + + V L+ EV+ Q PNGLR+H DL L E+ G E+TT + +L+PF +++ D+ V +R R V D++A KE E ++ + VD+ VQ +F +AS+ T ER RAALY +K F
Sbjct: 64 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRIP-NAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFVRETVVLLRDQDWEEDLIQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDMLAKYKFGPQSEKEKSDDEEETDDEEEEDKVFEQVDVAKVQHRIFAIASADDTAERNRAALYTLYKKF 331
BLAST of EWM24267.1 vs. NCBI_GenBank
Match: gi|568016846|gb|ETL91023.1| (hypothetical protein L917_10390 [Phytophthora parasitica]) HSP 1 Score: 193.356 bits (490), Expect = 2.278e-49 Identity = 105/270 (38.89%), Postives = 156/270 (57.78%), Query Frame = 0
Query: 69 FAKRLAANEKRERDQALKRLEVWMAKHKNLSEKDFLKIWKGLFYCMWMSDRARVQQDLGGAISRLVHCFGRDSGRAHLFVGAFYRTVRREWPGLDQHRLDKFYSFMRRMLRECLRFAQQRAWSAEALVSVVFPLNAEVLQQPWPNGLRLHACDLILPELARVGGGELTTAQALEVLQPFLVAMATSADRVVAERARARVLLDLVA--------SKEAEGVEAGGKEDVDAVSCMAGVDMEAVQATVFGLASSSATRERYRAALYEAHKAF 330
F + LA EK+ RD+ALK+L V++ K K +E ++ K+WK LFYCMWMSD+ VQ++L ++ LVH ++ A FV +F+RT+ REW GLD RLDKFYS +R+ +RE + + + W + + V L+ EV+ Q PNGLR+H DL L E+ G E+TT + +L+PF +++ D+ V +R R V D++A KE E ++ + VD+ VQ +F +AS+ T ER RAALY +K F
Sbjct: 64 FGQHLAHTEKKYRDRALKKLTVYLTKKKEWTELEWDKLWKALFYCMWMSDKRPVQEELSTNLAGLVHRIP-NAESALEFVHSFFRTMHREWHGLDGLRLDKFYSLVRKFVRETVVLLRDQDWEEDLVQEFVTILSTEVVSQ-LPNGLRMHLADLYLTEIHNAAGKEVTTEAFMTLLEPFFTLLSSEYDKTVFKRVRELVFDDMLAKYKFGPQSEKEKSDDEEETDDEEEEDKVFEQVDVAKVQHRIFAIASADDTAERNRAALYTLYKKF 331 The following BLAST results are available for this feature:
BLAST of EWM24267.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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