rna6449, rna6449 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6449
Unique Name	rna6449
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	719
Alignment location	CM002468.1:530761..532321 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100020g29.5418.mrna
Orig protein id	gnl\|cribi\|Naga_100020g29.5418
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:530761..532321 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g29	gene6231	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6449	rna6449-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24285.1	cds6433	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:530761..532321+
coding sequence from alignment at CM002468.1:530761..532321+

mRNA sequence

>rna6449 ID=rna6449|Name=rna6449|organism=Nannochloropsis gaditana|type=mRNA|length=719bp
CTGCTTGCAGCTCTGCTCGTCGTGTCGATTCCGCTTCCACCTCTTTTACT
TTTTTACTCAGGGCTGTTACCTACGAGGAAGACCATTTATAAAAGGATAG
TGAATACCACTGCGTCACTGCACCGACTGTACCACAAAATGTGTCCAAGA
CGATCTCACTTACCAACTCTCGAAATTCTTCGAGATTCTGCCGCATGGTC
TTCTGTGTCGAATCAAGTCTCTCCCATGTTACCACACTTGCGCTCTTACT
GCCGTAACCATTAGTCTGATCATCATGACCATATTTAAAAGGTGCTTGAC
TGCACACTGGACGCCTTTCTTCACATGTAAAGGTATCTGAGGATGACCGG
GCCTTGGACACATGCTGAGGGGAGGCTGTCCGTCCGTCCCTCGATGTTGG
ATGACAGGAATGGCGTACAGAAGGCGATGAGGATAGCACTGAACTTGGCT
GTAATGATATCGGCTGGGAAACACCCTCGGTTGGCGTATTTTGAACGCTT
TCTGTCGATGGTTGCAAGTCCTCGTCGTCGAAAGGTTGCGCAGAAGAAAC
CTGCGAGTTTCCCACATCATTGCCACCTACGATACTATTTCGCAGCAGCT
CAGGCACTGCGATACACTTCAAGTTGGGAGATATTCGAAGACCGGGCTTA
TTAGGGTCTTCAAGTGTACCACCAGGACCCAACGGTTTCGTACTTTCAGT
TTGTAACATTGCCTTTTCT

protein sequence of rna6449

>rna6449-protein ID=rna6449-protein|Name=rna6449|organism=Nannochloropsis gaditana|type=polypeptide|length=402bp
MQDDLESKTAATQREFRDQHMQLSQRLSVAIQRLALYEVKSGERYDLLKN
TLLELALKLVRKKVVAGLGPDPSIPDLLTQLDVQRTESTDQLLRLEQDIE
GLSGSYEQLHGSVQALVTRSNHWAALDVRLQEYHESLVKHCRHIFARSSL
SSYGPDQVLQLQGRGLLLKKETVDLIASHSYRIAKTIALKADYDIIRHNV
ESKDTLTDNQCDAKILQSRETYLMRFLGGVKRAVEVGLDGEGRASGITEI
ITQFHSKLEQAIRLALSKFSRIHTGRSLFGKISLEAEAACLACNRQFPEE
PGQGDRRASFRKSVTGSNSINAISGSNGISQRGSIYRQNRNSFKTFSSSK
EASFLENAIKEQRGRRSDARENVVSTARASTPANRQGRRATSYSLGTATI
IS

mRNA from alignment at CM002468.1:530761..532321+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6449 ID=rna6449|Name=rna6449|organism=Nannochloropsis gaditana|type=mRNA|length=1561bp|location=Sequence derived from alignment at CM002468.1:530761..532321+ (Nannochloropsis gaditana)
ATGCAGGACGATTTAGAATCAAAGACAGCGGCCACACAACGTGAGTTTCG
AGACCAGCACATGCAACTTTCTCAACGCCTCAGTGTTGCAATACAGCGAC
TAGCCTTGTACGAGGTTAAATCAGGGGAACGATATGACCTCCTCAAAAAC
ACGTTATTGGAGTTAGCTCTCAAGCTTGTGAGGAAAAAAGTTGTGGCGGG
TCTCGGGCCCGATCCCTCGATTCCTGACCTGCTTACTCAGCTGGATGTGC
AGCGGACAGAGTCAACTGATCAACTATTGCGGCTTGAGCAGGATATTGAA
GGCTTATCAGGGTCCTATGAGCAGTTGCACGGCAGCGTCCAAGCTCTAGT
CACTCGTAGCAATCATTGGGCAGCGCTGGATGTCCGCTTACAAGAGTATC
ATGAGAGCCTGGTAAAGCATTGTCGACATATTTTCGCCAGGTCTTCTTTA
TCTTCTTATGGACCAGACCAAGTACTGCAGTTACAAGGACGTGGATTGCT
GCTGAAAAAGGAAACAGTAGATTTGATTGCCAGTCATAGTTATCGCATTG
CCAAGACAATTGCCTTAAAAGCAGACTATGACATCATACGCCACAATGTT
GAAAGTAAAGACACACTGACAGATAACCAATGCGACGCCAAGATTTTGCA
GTCGCGTGAGACTTATCTTATGCGATTTTTGGGAGGCGTAAAGAGAGCAG
TAGAAGTTGGACTCGATGGAGAAGGGCGTGCTAGCGGGATAACAGAAATC
ATTACGCAGTTTCATTCGAAGCTCGAGCAAGCAATTCGGTTGGCATTGTC
CAAGTTTTCTCGCATTCATACTGGACGATCTTTGTTTGGTAAAATCAGTC
TCGAGGCCGAAGCAGCATGTTTAGCATGTAACCGTCAATTTCCAGAAGAA
CCGGGTTAGTATAAGGGTTATTTACAAAGACGAAAATGGGATAAATAAGC
TATTAAAATGTTGTTTGGGTCTTGACACTTTGTGTACGGACGCCAAGCAC
TTCTTCTAATGTACACCTGCTTGCCGACGTAGAGATGCCATTAAATTTTA
CTGATTTCGTGCTATTTTACTTACATCTTACTGTAACAGGGCAAGGTGAT
CGCCGGGCATCTTTCAGGAAATCGGTCACGGGCAGCAATTCCATCAATGC
AATATCTGGCAGCAACGGCATAAGTCAACGTGGCTCGATCTACCGTCAAA
ACCGCAACAGCTTCAAAACTTTTTCATCTAGTAAAGAGGCTAGCTTCTTG
GAAAATGTGAGTAGATTTTTTAATCAGATACAAATCGAATTACATAATTT
ATGTGTCAAATAAGGCACAATGTGTTATTGCATTTGAGATAATGATATTC
GCATTTCATTGACTACATGCGTCGTGAGACGGCAAACTTACTAAGGGGTT
GTAATCACAATATGGATGCACAGGCCATTAAGGAGCAGCGAGGACGTCGT
TCTGACGCCCGAGAGAATGTAGTCTCCACGGCCAGAGCTTCTACACCTGC
CAATCGTCAAGGAAGGCGTGCCACAAGCTACTCTTTAGGTACAGCGACCA
TAATCAGCTGA

Coding sequence (CDS) from alignment at CM002468.1:530761..532321+

>rna6449 ID=rna6449|Name=rna6449|organism=Nannochloropsis gaditana|type=CDS|length=3627bp|location=Sequence derived from alignment at CM002468.1:530761..532321+ (Nannochloropsis gaditana)
ATGCAGGACGATTTAGAATCAAAGACAGCGGCCACACAACGTGAGTTTCG
AGACCAGCACATGCAACTTTCTCAACGCCTCAGTGTTGCAATACAGCGAC
TAGCCTTGTACGAGGTTAAATCAGGGGAACGATATGACCTCCTCAAAAAC
ACGTTATTGGAGTTAGCTCTCAAGCTTGTGAGGAAAAAAGTTGTGGCGGG
TCTCGGGCCCGATCCCTCGATTCCTGACCTGCTTACTCAGCTGGATGTGC
AGCGGACAGAGTCAACTGATCAACTATTGCGGCTTGAGCAGGATATTGAA
GGCTTATCAGGGTCCTATGAGCAGTTGCACGGCAGCGTCCAAGCTCTAGT
CACTCGTAGCAATCATTGGGCAGCGCTGGATGTCCGCTTACAAGAGTATC
ATGAGAGCCTGGTAAAGCATTGTCGACATATTTTCGCCAGGTCTTCTTTA
TCTTCTTATGGACCAGACCAAGTACTGCAGTTACAAGGACGTGGATTGCT
GCTGAAAAAGGAAACAGTAGATTTGATTGCCAGTCATAGTTATCGCATTG
CCAAGACAATTGCCTTAAAAGCAGACTATGACATCATACGCCACAATGTT
GAAAGTAAAGACACACTGACAGATAACCAATGCGACGCCAAGATTTTGCA
GTCGCGTGAGACTTATCTTATGCGATTTTTGGGAGGCGTAAAGAGAGCAG
TAGAAGTTGGACTCGATGGAGAAGGGCGTGCTAGCGGGATAACAGAAATC
ATTACGCAGTTTCATTCGAAGCTCGAGCAAGCAATTCGGTTGGCATTGTC
CAAGTTTTCTCGCATTCATACTGGACGATCTTTGTTTGGTAAAATCAGTC
TCGAGGCCGAAGCAGCATGTTTAGCATGTAACCGTCAATTTCCAGAAGAA
CCGGGGCAAGGTGATCGCCGGGCATCTTTCAGGAAATCGGTCACGGGCAG
CAATTCCATCAATGCAATATCTGGCAGCAACGGCATAAGTCAACGTGGCT
CGATCTACCGTCAAAACCGCAACAGCTTCAAAACTTTTTCATCTAGTAAA
GAGGCTAGCTTCTTGGAAAATGCCATTAAGGAGCAGCGAGGACGTCGTTC
TGACGCCCGAGAGAATGTAGTCTCCACGGCCAGAGCTTCTACACCTGCCA
ATCGTCAAGGAAGGCGTGCCACAAGCTACTCTTTAGGTACAGCGACCATA
ATCAGCTGAATGCAGGACGATTTAGAATCAAAGACAGCGGCCACACAACG
TGAGTTTCGAGACCAGCACATGCAACTTTCTCAACGCCTCAGTGTTGCAA
TACAGCGACTAGCCTTGTACGAGGTTAAATCAGGGGAACGATATGACCTC
CTCAAAAACACGTTATTGGAGTTAGCTCTCAAGCTTGTGAGGAAAAAAGT
TGTGGCGGGTCTCGGGCCCGATCCCTCGATTCCTGACCTGCTTACTCAGC
TGGATGTGCAGCGGACAGAGTCAACTGATCAACTATTGCGGCTTGAGCAG
GATATTGAAGGCTTATCAGGGTCCTATGAGCAGTTGCACGGCAGCGTCCA
AGCTCTAGTCACTCGTAGCAATCATTGGGCAGCGCTGGATGTCCGCTTAC
AAGAGTATCATGAGAGCCTGGTAAAGCATTGTCGACATATTTTCGCCAGG
TCTTCTTTATCTTCTTATGGACCAGACCAAGTACTGCAGTTACAAGGACG
TGGATTGCTGCTGAAAAAGGAAACAGTAGATTTGATTGCCAGTCATAGTT
ATCGCATTGCCAAGACAATTGCCTTAAAAGCAGACTATGACATCATACGC
CACAATGTTGAAAGTAAAGACACACTGACAGATAACCAATGCGACGCCAA
GATTTTGCAGTCGCGTGAGACTTATCTTATGCGATTTTTGGGAGGCGTAA
AGAGAGCAGTAGAAGTTGGACTCGATGGAGAAGGGCGTGCTAGCGGGATA
ACAGAAATCATTACGCAGTTTCATTCGAAGCTCGAGCAAGCAATTCGGTT
GGCATTGTCCAAGTTTTCTCGCATTCATACTGGACGATCTTTGTTTGGTA
AAATCAGTCTCGAGGCCGAAGCAGCATGTTTAGCATGTAACCGTCAATTT
CCAGAAGAACCGGGGCAAGGTGATCGCCGGGCATCTTTCAGGAAATCGGT
CACGGGCAGCAATTCCATCAATGCAATATCTGGCAGCAACGGCATAAGTC
AACGTGGCTCGATCTACCGTCAAAACCGCAACAGCTTCAAAACTTTTTCA
TCTAGTAAAGAGGCTAGCTTCTTGGAAAATGCCATTAAGGAGCAGCGAGG
ACGTCGTTCTGACGCCCGAGAGAATGTAGTCTCCACGGCCAGAGCTTCTA
CACCTGCCAATCGTCAAGGAAGGCGTGCCACAAGCTACTCTTTAGGTACA
GCGACCATAATCAGCTGAATGCAGGACGATTTAGAATCAAAGACAGCGGC
CACACAACGTGAGTTTCGAGACCAGCACATGCAACTTTCTCAACGCCTCA
GTGTTGCAATACAGCGACTAGCCTTGTACGAGGTTAAATCAGGGGAACGA
TATGACCTCCTCAAAAACACGTTATTGGAGTTAGCTCTCAAGCTTGTGAG
GAAAAAAGTTGTGGCGGGTCTCGGGCCCGATCCCTCGATTCCTGACCTGC
TTACTCAGCTGGATGTGCAGCGGACAGAGTCAACTGATCAACTATTGCGG
CTTGAGCAGGATATTGAAGGCTTATCAGGGTCCTATGAGCAGTTGCACGG
CAGCGTCCAAGCTCTAGTCACTCGTAGCAATCATTGGGCAGCGCTGGATG
TCCGCTTACAAGAGTATCATGAGAGCCTGGTAAAGCATTGTCGACATATT
TTCGCCAGGTCTTCTTTATCTTCTTATGGACCAGACCAAGTACTGCAGTT
ACAAGGACGTGGATTGCTGCTGAAAAAGGAAACAGTAGATTTGATTGCCA
GTCATAGTTATCGCATTGCCAAGACAATTGCCTTAAAAGCAGACTATGAC
ATCATACGCCACAATGTTGAAAGTAAAGACACACTGACAGATAACCAATG
CGACGCCAAGATTTTGCAGTCGCGTGAGACTTATCTTATGCGATTTTTGG
GAGGCGTAAAGAGAGCAGTAGAAGTTGGACTCGATGGAGAAGGGCGTGCT
AGCGGGATAACAGAAATCATTACGCAGTTTCATTCGAAGCTCGAGCAAGC
AATTCGGTTGGCATTGTCCAAGTTTTCTCGCATTCATACTGGACGATCTT
TGTTTGGTAAAATCAGTCTCGAGGCCGAAGCAGCATGTTTAGCATGTAAC
CGTCAATTTCCAGAAGAACCGGGGCAAGGTGATCGCCGGGCATCTTTCAG
GAAATCGGTCACGGGCAGCAATTCCATCAATGCAATATCTGGCAGCAACG
GCATAAGTCAACGTGGCTCGATCTACCGTCAAAACCGCAACAGCTTCAAA
ACTTTTTCATCTAGTAAAGAGGCTAGCTTCTTGGAAAATGCCATTAAGGA
GCAGCGAGGACGTCGTTCTGACGCCCGAGAGAATGTAGTCTCCACGGCCA
GAGCTTCTACACCTGCCAATCGTCAAGGAAGGCGTGCCACAAGCTACTCT
TTAGGTACAGCGACCATAATCAGCTGA

Synonyms

Publications