EWM24285.1, cds6433 (CDS) Nannochloropsis gaditana

Overview
NameEWM24285.1
Unique Namecds6433
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:530761..531664 +
Alignment locationCM002468.1:531850..532016 +
Alignment locationCM002468.1:532184..532321 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24285.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100020g29.5418.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:530761..531664 +
CM002468.1supercontigCM002468.1:531850..532016 +
CM002468.1supercontigCM002468.1:532184..532321 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24285.1 vs. NCBI_GenBank
Match: gi|585105676|gb|EWM24285.1| (hypothetical protein Naga_100020g29 [Nannochloropsis gaditana])

HSP 1 Score: 819.305 bits (2115), Expect = 0.000e+0
Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 0
Query:    1 MQDDLESKTAATQREFRDQHMQLSQRLSVAIQRLALYEVKSGERYDLLKNTLLELALKLVRKKVVAGLGPDPSIPDLLTQLDVQRTESTDQLLRLEQDIEGLSGSYEQLHGSVQALVTRSNHWAALDVRLQEYHESLVKHCRHIFARSSLSSYGPDQVLQLQGRGLLLKKETVDLIASHSYRIAKTIALKADYDIIRHNVESKDTLTDNQCDAKILQSRETYLMRFLGGVKRAVEVGLDGEGRASGITEIITQFHSKLEQAIRLALSKFSRIHTGRSLFGKISLEAEAACLACNRQFPEEPGQGDRRASFRKSVTGSNSINAISGSNGISQRGSIYRQNRNSFKTFSSSKEASFLENAIKEQRGRRSDARENVVSTARASTPANRQGRRATSYSLGTATIIS 402
            MQDDLESKTAATQREFRDQHMQLSQRLSVAIQRLALYEVKSGERYDLLKNTLLELALKLVRKKVVAGLGPDPSIPDLLTQLDVQRTESTDQLLRLEQDIEGLSGSYEQLHGSVQALVTRSNHWAALDVRLQEYHESLVKHCRHIFARSSLSSYGPDQVLQLQGRGLLLKKETVDLIASHSYRIAKTIALKADYDIIRHNVESKDTLTDNQCDAKILQSRETYLMRFLGGVKRAVEVGLDGEGRASGITEIITQFHSKLEQAIRLALSKFSRIHTGRSLFGKISLEAEAACLACNRQFPEEPGQGDRRASFRKSVTGSNSINAISGSNGISQRGSIYRQNRNSFKTFSSSKEASFLENAIKEQRGRRSDARENVVSTARASTPANRQGRRATSYSLGTATIIS
Sbjct:    1 MQDDLESKTAATQREFRDQHMQLSQRLSVAIQRLALYEVKSGERYDLLKNTLLELALKLVRKKVVAGLGPDPSIPDLLTQLDVQRTESTDQLLRLEQDIEGLSGSYEQLHGSVQALVTRSNHWAALDVRLQEYHESLVKHCRHIFARSSLSSYGPDQVLQLQGRGLLLKKETVDLIASHSYRIAKTIALKADYDIIRHNVESKDTLTDNQCDAKILQSRETYLMRFLGGVKRAVEVGLDGEGRASGITEIITQFHSKLEQAIRLALSKFSRIHTGRSLFGKISLEAEAACLACNRQFPEEPGQGDRRASFRKSVTGSNSINAISGSNGISQRGSIYRQNRNSFKTFSSSKEASFLENAIKEQRGRRSDARENVVSTARASTPANRQGRRATSYSLGTATIIS 402          
BLAST of EWM24285.1 vs. NCBI_GenBank
Match: gi|298713764|emb|CBJ33731.1| (myosin-like antigen [Ectocarpus siliculosus])

HSP 1 Score: 87.0409 bits (214), Expect = 7.046e-15
Identity = 61/235 (25.96%), Postives = 117/235 (49.79%), Query Frame = 0
Query:   77 LLTQLDVQRTESTDQLLRLEQDIEGLSGSYEQLHGSVQALVTRSNHWAALDVRLQEYHESLVKHCRHIFARSSLS---SYGPDQVLQLQGRGLLLKKETVDLIASHSYRIAKTIALKADYDIIRHNVESKDTLTDNQCDAKILQSRETYLMRFLGGVKRAVEVGLDGEGRASGITEIITQFHSKLEQAIRLALSKFSRIHTGRSLFGKISLEAEAACLACNRQFPEEPGQGDRRA 308
            L+  +D  + E+ D++  LE+    +  +  +L  S+ AL T+   W  L+V+ + + + L  H   +   ++ +   S GP            ++K     +++ S  +AK +A +ADY++ R  V  K+   D+  D K+ + R  ++ +F+  V +          R   + E+   F +KLE +++LA+SK+  I  G ++ GK+ L    +C+AC+R F + PG GD R+
Sbjct:  136 LVKDIDHFKAENGDRMTSLERSNVSVVTTMRRLQRSLDALATKEGRWDRLEVQTKRHVQVLGGHLADLEGAATCAEPFSLGP-----------AMQKH----VSAVSQMVAKIVATRADYEVTRQAVNRKNPGEDSDWDRKVEELRIRFMNKFVSDVVQVASKLRPLPDRP--VEEVRETFATKLELSMKLAISKYKPIQAGATILGKVHL--LPSCMACDRPFIDNPGPGDPRS 351          
BLAST of EWM24285.1 vs. NCBI_GenBank
Match: gi|299472188|emb|CBN79691.1| (hypothetical protein Esi_0368_0016 [Ectocarpus siliculosus])

HSP 1 Score: 73.9442 bits (180), Expect = 1.686e-10
Identity = 64/222 (28.83%), Postives = 104/222 (46.85%), Query Frame = 0
Query:   73 SIPDLLTQLDVQRTESTDQLLRLEQDIEGLSGSYEQLHGSVQALVTRSNHWAALDVRLQEYHESLVKHCRHIFARSSLSSYGPDQVLQLQGRGLLLKKETVDLIASHSYRIAKTIALKADYDIIRHNVESKDTL--TDNQCDAKILQSRETYLMRFLGGVKRA-------VEVGLDGEGRASGITEIITQFHSKLEQAIRLALSKFSRIHTGRSLFGKISLE 285
            S+  L T L  Q  ++   +  L++   G+     ++   V AL T+   W A+DV+L  +  ++ + C  +           D  +  + R + L KE    +A    R+AK +A+KADY++IR  +   DT   T    D ++   R+T + RFL   + A       V    +GE       EI  +F  KL  A+++ALSK+S    G +LFGKI L+
Sbjct:  662 SLAHLGTALRRQGEDAAQMVSTLQRSSVGIVTVLRKMEAGVHALSTKDLFWKAVDVKLAAHQRAVGEVCLDV----------EDATVSRRSR-ITLSKEAQACLAGDMQRVAKLMAVKADYEVIR-ELAKLDTPEQTGQDWDERVEFLRQTQMRRFLKDCRDALDKTAPEVRTNFNGE-------EIRGKFMGKLSDALKVALSKYSPTTPGATLFGKIKLK 864          
The following BLAST results are available for this feature:
BLAST of EWM24285.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585105676|gb|EWM24285.1|0.000e+0100.00hypothetical protein Naga_100020g29 [Nannochlorops... [more]
gi|298713764|emb|CBJ33731.1|7.046e-1525.96myosin-like antigen [Ectocarpus siliculosus][more]
gi|299472188|emb|CBN79691.1|1.686e-1028.83hypothetical protein Esi_0368_0016 [Ectocarpus sil... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6449rna6449Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications