rna6443, rna6443 (mRNA) Nannochloropsis gaditana

Overview
Namerna6443
Unique Namerna6443
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length986
Alignment locationCM002468.1:520092..521416 -

Link to JBrowse

Properties
Property NameValue
Productdna repair protein DMC1
Orig transcript idgnl|cribi|Naga_100020g36.5390.mrna
Orig protein idgnl|cribi|Naga_100020g36.5390
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:520092..521416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100020g36gene6225Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6443rna6443-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24257.1cds6427Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6443 ID=rna6443|Name=rna6443|organism=Nannochloropsis gaditana|type=mRNA|length=986bp
AGGACTGTCCCTTCCGATGGTCAGTTACAATAGACACCATAGAGGCCCTG
AAGAGTCGTGCATTATGTGTCTTCACGTATGGGTTTCCTTGGCCATTCAT
GTTCCCTCCAGTCCGAGTGGCTACAAAGTCGTTCCAAATCTGCGTAGAGG
TACATACTGGCCTCACATGGGTTTATCTTTTCATTCACATAGTTCTCACT
CGTCAGCGATGCCACCGTCCGTAATAGCAAATTGTGCTTCAGCCTCGGGC
ATTGACGGCGAATCCACGACTTTGGCGACGCGGCAGTTTTCACGACCCTT
TTTAAGATGGATGCGGGTACATGAAGCGTGTGCTAACACGTTACCGCCTA
CTGGCTTGACGACTGGGGCAAAGAGACTCATAGCGCCTGGATCGGCGGTG
CATTGATTGACAAGAAAGACGGCAATGTTCATGTCTTCGGCCAAACGCGT
CAGTGCGGAAAGGTGTTGTCCAAGCTTCTGCTGACGTTCAGATAGTTCTG
ATAGGATGAGCGGTGTATGAAAGGGGGATGAGTAGGAGTGGATGGGTGGC
AAAAAAGCCTGATGAAAAAACTTTTTTGACTGTTCCATGACCTCGATCAA
GCGCGACCGAGTTGTGACGAGAAATTTAACCGCAGATGAGAGCACTTATG
TTGTTCAAGCCAAAGTATATATAAAGGCAAAGTCAGAGGTAAAAAGAAAA
AAAGGGGGACGGGGGAAACAGGTGATCAAAGAATTATTTACGTACCGCCG
CGTCCAGAGTAATCGACCCGGAACAAGGCGATGATTGAGTCGATTATCAG
CATCCGGAAAGGACCATGCTCTGCGATTAAAGCCGCTAGAGGTTTTAATA
GCTCGCACTGTTGATCTGTCGAAAATTATTTTTGCCGTGGGTGGTAAAAT
TAAAATCAGAGGGTTTAGCTATATCTGAGGACAGGGTAAAGCGAAGGGGC
TGCAAAGACAAAGAAGCATGCATATATTCACTGACG
back to top

protein sequence of rna6443

>rna6443-protein ID=rna6443-protein|Name=rna6443|organism=Nannochloropsis gaditana|type=polypeptide|length=225bp
MDVDDTMVNVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKG
FSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAI
LGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDT
EGNFRPERIEKIAERFGLDADATLDNIIVARAYASVRAIKTSSGFNRRAW
SFPDADNRLNHRLVPGRLLWTRRTI
back to top

mRNA from alignment at CM002468.1:520092..521416-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6443 ID=rna6443|Name=rna6443|organism=Nannochloropsis gaditana|type=mRNA|length=1325bp|location=Sequence derived from alignment at CM002468.1:520092..521416- (Nannochloropsis gaditana)
ATGGACGTGGACGATACGATGGTCAATGTCTCCGAGCTGCAAAAGCTTGG
CGTGAACGCTGCCGGTAGGTGTGACTGGGTCATGTTGCACGACAAATCCG
AGAGAAGGGCCTGTTTAATTTGACTCGTTAGCACACTATTTATGTTTTAA
ATCATTACCATCTCTTCATTTCATCAAATGTTGCTTTAGATATCGCTAAG
CTTGTTGAAGCCGGAATTTCGACTGCGGGCATGGTGTGTAAGGTCCCATT
GAAAGTATTGCTGGCAATTAAGGGCTTTAGCGAGGCCAAGGTAGAGAAAA
TTCGATCAAGTGCACGAAAGCTGACCGGCGGCACATCGCATCCATTTCGG
ACGGGTACTGAGGTCCGTGAACAACGCAAACGTTGCATAAAAATTACAAC
TGGCGCTAAAACTTTTGACGCAATTCTGGGCGGTGGTGTTGAAAGTGGAA
GTATCACGGAGGCATACGGAGAGTTTCGTACAGGTAAAACCCAGCTTTCC
CACACCCTGGCTGTGACTTGTCAGCTAGGGTTTGATCAAGGCGGCGGGCA
AGGAAAATGCATCTATCTGGACACAGAGGGCAATTTTCGTCCTGAACGCA
TCGAGAAAATTGCTGAGCGCTTTGGTTTGGATGCAGATGCTACTTTAGAC
AACATAATTGTCGCCCGTGCCTATGCATCCGGTACGTATCCTGAAACATG
AAGGAAACAGTATTTTACCTAATATTAGCAGGAAGGAACACATAAAAAGT
CTTACTTGCGTGCAAACCAAAAGAAGCGATTCTGTTGAAAGTACACGGAC
AATAACAATTTGATAGATAATTCGTGCGTCAGTGAATATATGCATGCTTC
TTTGTCTTTGCAGCCCCTTCGCTTTACCCTGTCCTCAGATATAGCTAAAC
CCTCTGATTTTAATTTTACCACCCACGGCAAAAATAATTTTCGACAGATC
AACAGTGCGAGCTATTAAAACCTCTAGCGGCTTTAATCGCAGAGCATGGT
CCTTTCCGGATGCTGATAATCGACTCAATCATCGCCTTGTTCCGGGTCGA
TTACTCTGGACGCGGCGGTACGTAAATAATTCTTTGATCACCTGTTTCCC
CCGTCCCCCTTTTTTTCTTTTTACCTCTGACTTTGCCTTTATATATACTT
TGGCTTGAACAACATAAGTGCTCTCATCTGCGGTTAAATTTCTCGTCACA
ACTCGGTCGCGCTTGATCGAGGTCATGGAACAGTCAAAAAAGTTTTTTCA
TCAGGCTTTTTTGCCACCCATCCACTCCTACTCATCCCCCTTTCATACAC
CGCTCATCCTATCAGAACTATCTGA
back to top

Coding sequence (CDS) from alignment at CM002468.1:520092..521416-

>rna6443 ID=rna6443|Name=rna6443|organism=Nannochloropsis gaditana|type=CDS|length=2712bp|location=Sequence derived from alignment at CM002468.1:520092..521416- (Nannochloropsis gaditana)
AACTATCTGATGCGAGCTATTAAAACCTCTAGCGGCTTTAATCGCAGAGC
ATGGTCCTTTCCGGATGCTGATAATCGACTCAATCATCGCCTTGTTCCGG
GTCGATTACTCTGGACGCGGCGATATCGCTAAGCTTGTTGAAGCCGGAAT
TTCGACTGCGGGCATGGTGTGTAAGGTCCCATTGAAAGTATTGCTGGCAA
TTAAGGGCTTTAGCGAGGCCAAGGTAGAGAAAATTCGATCAAGTGCACGA
AAGCTGACCGGCGGCACATCGCATCCATTTCGGACGGGTACTGAGGTCCG
TGAACAACGCAAACGTTGCATAAAAATTACAACTGGCGCTAAAACTTTTG
ACGCAATTCTGGGCGGTGGTGTTGAAAGTGGAAGTATCACGGAGGCATAC
GGAGAGTTTCGTACAGGTAAAACCCAGCTTTCCCACACCCTGGCTGTGAC
TTGTCAGCTAGGGTTTGATCAAGGCGGCGGGCAAGGAAAATGCATCTATC
TGGACACAGAGGGCAATTTTCGTCCTGAACGCATCGAGAAAATTGCTGAG
CGCTTTGGTTTGGATGCAGATGCTACTTTAGACAACATAATTGTCGCCCG
TGCCTATGCATCCGATGGACGTGGACGATACGATGGTCAATGTCTCCGAG
CTGCAAAAGCTTGGCGTGAACGCTGCCGAACTATCTGATGCGAGCTATTA
AAACCTCTAGCGGCTTTAATCGCAGAGCATGGTCCTTTCCGGATGCTGAT
AATCGACTCAATCATCGCCTTGTTCCGGGTCGATTACTCTGGACGCGGCG
ATATCGCTAAGCTTGTTGAAGCCGGAATTTCGACTGCGGGCATGGTGTGT
AAGGTCCCATTGAAAGTATTGCTGGCAATTAAGGGCTTTAGCGAGGCCAA
GGTAGAGAAAATTCGATCAAGTGCACGAAAGCTGACCGGCGGCACATCGC
ATCCATTTCGGACGGGTACTGAGGTCCGTGAACAACGCAAACGTTGCATA
AAAATTACAACTGGCGCTAAAACTTTTGACGCAATTCTGGGCGGTGGTGT
TGAAAGTGGAAGTATCACGGAGGCATACGGAGAGTTTCGTACAGGTAAAA
CCCAGCTTTCCCACACCCTGGCTGTGACTTGTCAGCTAGGGTTTGATCAA
GGCGGCGGGCAAGGAAAATGCATCTATCTGGACACAGAGGGCAATTTTCG
TCCTGAACGCATCGAGAAAATTGCTGAGCGCTTTGGTTTGGATGCAGATG
CTACTTTAGACAACATAATTGTCGCCCGTGCCTATGCATCCGATGGACGT
GGACGATACGATGGTCAATGTCTCCGAGCTGCAAAAGCTTGGCGTGAACG
CTGCCGAACTATCTGATGCGAGCTATTAAAACCTCTAGCGGCTTTAATCG
CAGAGCATGGTCCTTTCCGGATGCTGATAATCGACTCAATCATCGCCTTG
TTCCGGGTCGATTACTCTGGACGCGGCGATATCGCTAAGCTTGTTGAAGC
CGGAATTTCGACTGCGGGCATGGTGTGTAAGGTCCCATTGAAAGTATTGC
TGGCAATTAAGGGCTTTAGCGAGGCCAAGGTAGAGAAAATTCGATCAAGT
GCACGAAAGCTGACCGGCGGCACATCGCATCCATTTCGGACGGGTACTGA
GGTCCGTGAACAACGCAAACGTTGCATAAAAATTACAACTGGCGCTAAAA
CTTTTGACGCAATTCTGGGCGGTGGTGTTGAAAGTGGAAGTATCACGGAG
GCATACGGAGAGTTTCGTACAGGTAAAACCCAGCTTTCCCACACCCTGGC
TGTGACTTGTCAGCTAGGGTTTGATCAAGGCGGCGGGCAAGGAAAATGCA
TCTATCTGGACACAGAGGGCAATTTTCGTCCTGAACGCATCGAGAAAATT
GCTGAGCGCTTTGGTTTGGATGCAGATGCTACTTTAGACAACATAATTGT
CGCCCGTGCCTATGCATCCGATGGACGTGGACGATACGATGGTCAATGTC
TCCGAGCTGCAAAAGCTTGGCGTGAACGCTGCCGAACTATCTGATGCGAG
CTATTAAAACCTCTAGCGGCTTTAATCGCAGAGCATGGTCCTTTCCGGAT
GCTGATAATCGACTCAATCATCGCCTTGTTCCGGGTCGATTACTCTGGAC
GCGGCGATATCGCTAAGCTTGTTGAAGCCGGAATTTCGACTGCGGGCATG
GTGTGTAAGGTCCCATTGAAAGTATTGCTGGCAATTAAGGGCTTTAGCGA
GGCCAAGGTAGAGAAAATTCGATCAAGTGCACGAAAGCTGACCGGCGGCA
CATCGCATCCATTTCGGACGGGTACTGAGGTCCGTGAACAACGCAAACGT
TGCATAAAAATTACAACTGGCGCTAAAACTTTTGACGCAATTCTGGGCGG
TGGTGTTGAAAGTGGAAGTATCACGGAGGCATACGGAGAGTTTCGTACAG
GTAAAACCCAGCTTTCCCACACCCTGGCTGTGACTTGTCAGCTAGGGTTT
GATCAAGGCGGCGGGCAAGGAAAATGCATCTATCTGGACACAGAGGGCAA
TTTTCGTCCTGAACGCATCGAGAAAATTGCTGAGCGCTTTGGTTTGGATG
CAGATGCTACTTTAGACAACATAATTGTCGCCCGTGCCTATGCATCCGAT
GGACGTGGACGATACGATGGTCAATGTCTCCGAGCTGCAAAAGCTTGGCG
TGAACGCTGCCG
back to top
Synonyms
Publications