EWM24257.1, cds6427 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|585105648|gb|EWM24257.1| (dna repair protein DMC1 [Nannochloropsis gaditana]) HSP 1 Score: 460.685 bits (1184), Expect = 3.969e-164 Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query: 1 MDVDDTMVNVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAYASVRAIKTSSGFNRRAWSFPDADNRLNHRLVPGRLLWTRRTI 225
MDVDDTMVNVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAYASVRAIKTSSGFNRRAWSFPDADNRLNHRLVPGRLLWTRRTI
Sbjct: 1 MDVDDTMVNVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAYASVRAIKTSSGFNRRAWSFPDADNRLNHRLVPGRLLWTRRTI 225
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|298711280|emb|CBJ26525.1| (Meiotic recombination protein DMC1/LIM15 homolog, putative [Ectocarpus siliculosus]) HSP 1 Score: 199.904 bits (507), Expect = 9.518e-61 Identity = 99/184 (53.80%), Postives = 132/184 (71.74%), Query Frame = 0
Query: 1 MDVDDTMVNVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKL-TGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
+D D+ V EL G+ A+I KL EA ++T G V P K LL I+GFS+A V KI+ +A K+ T G+S F+TG + R+ R++ IK+ TG+K DA+LGGG+E+GSITE +GEFR+GKTQL HTL VT QL + GG +G+ +Y+DTEGNFRPER+E IAERFGLD TL+N+IV R +
Sbjct: 23 VDDVDSFQCVEELTNAGIKMAEINKLKEANLATVGAVLATPTKRLLTIRGFSDATVAKIQLAAAKVDTSGSSGMFKTGLQCRQAREKVIKVHTGSKQLDALLGGGIETGSITEFFGEFRSGKTQLCHTLCVTSQLSKESGGAEGRVVYMDTEGNFRPERVEAIAERFGLDPTETLENVIVTRVF 206
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|528218270|gb|EPY20884.1| (meiotic recombination protein DMC1 [Strigomonas culicis] >gi|528238636|gb|EPY29596.1| meiotic recombination protein DMC1 [Strigomonas culicis] >gi|528249014|gb|EPY33872.1| meiotic recombination protein DMC1 [Strigomonas culicis]) HSP 1 Score: 198.364 bits (503), Expect = 7.562e-59 Identity = 106/181 (58.56%), Postives = 130/181 (71.82%), Query Frame = 0
Query: 6 TMVNVSELQKLGVNAADIAKLVEAGISTA---GMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
T++ + +L + G+ AADI KL +AGI T M CK K L IKG SEAKVEKI +ARKL+ + F TGT+ EQR I ITTG+ D +LGGG+ES +ITEA+GEFRTGKTQ++HTL VTCQL GGG GK +Y+DTEG FRPERI+ IA+RFGLD +A LDNI+VARAY
Sbjct: 31 TLLEIDQLAEQGIAAADITKLKQAGIFTVPGIHMQCK---KDLALIKGLSEAKVEKIIEAARKLS---NTGFVTGTKYLEQRASVIHITTGSTALDQMLGGGIESRAITEAFGEFRTGKTQIAHTLCVTCQLPSSMGGGNGKAVYVDTEGTFRPERIKPIADRFGLDVNAILDNILVARAY 205
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|76157801|gb|AAX28612.2| (SJCHGC08668 protein, partial [Schistosoma japonicum]) HSP 1 Score: 194.126 bits (492), Expect = 8.616e-59 Identity = 100/184 (54.35%), Postives = 125/184 (67.93%), Query Frame = 0
Query: 3 VDDTMVNVSELQKL---GVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
VDD +QKL G+ AAD+ KL EAG T + VP K LLA+KG SEAK +KI +A+KL F T TE ++R I++TTG+K D +L GG+E+GSITE +GEFRTGKTQ+ HTLAVTCQL D GGG+GKC+Y+DTEG FRPER+ +AER+GL LDN+ ARAY
Sbjct: 7 VDDESCGPLLIQKLESAGIAAADVKKLREAGFHTVESIQFVPKKTLLAVKGISEAKADKIIEAAQKLV---PFGFTTATEFHQKRSEIIQLTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPIDMGGGEGKCLYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAY 187
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|1026977364|ref|XP_016608808.1| (DNA repair protein RAD51 [Spizellomyces punctatus DAOM BR117] >gi|907095104|gb|KND00769.1| DNA repair protein RAD51 [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 197.593 bits (501), Expect = 1.150e-58 Identity = 95/176 (53.98%), Postives = 123/176 (69.89%), Query Frame = 0
Query: 8 VNVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
+ +S+L++ G+++ D+AKL AG T + P K LLAIKG SEAK +KI + A KL F T TE ++R I + TG+K D +LGGG+E+G+ITE +GEFRTGKTQL HTLAV CQL D GGG+GKC+Y+DTEG FRPER+ +AERFGL+ D LDN+ ARAY
Sbjct: 23 LKISKLEEFGISSGDVAKLASAGYHTVEAIAYTPKKQLLAIKGISEAKADKILTEAAKLV---PMGFTTATEFYQRRNEIITLQTGSKELDKLLGGGIETGAITEIFGEFRTGKTQLCHTLAVICQLPIDMGGGEGKCLYIDTEGTFRPERLLAVAERFGLNGDEVLDNVAYARAY 195
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|1183329578|gb|ORX59322.1| (hypothetical protein BCR36DRAFT_579906 [Piromyces finnis]) HSP 1 Score: 197.208 bits (500), Expect = 1.175e-58 Identity = 99/178 (55.62%), Postives = 123/178 (69.10%), Query Frame = 0
Query: 8 VNVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAYAS 185
+ VS+L++ G++A DI KLV G T + P K LL IKG SEAK +KI A KL F T TE ++R I ITTG+K D +LGGG+E+GSITE +GEFRTGKTQL HTLAVTCQL D GGG+GKC+Y+DTEG FRPER+ +AER+GL+ + LDN+ ARAY S
Sbjct: 23 IPVSKLEECGISANDIKKLVAEGYHTVESIAYTPKKQLLVIKGISEAKADKILMEATKLV---PMGFTTATEFHQRRADMISITTGSKELDTLLGGGLETGSITEIFGEFRTGKTQLCHTLAVTCQLPLDMGGGEGKCLYIDTEGTFRPERLLAVAERYGLNGEEVLDNVAYARAYNS 197
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|358332289|dbj|GAA50958.1| (DNA repair protein RAD51 [Clonorchis sinensis]) HSP 1 Score: 196.438 bits (498), Expect = 3.142e-58 Identity = 98/176 (55.68%), Postives = 123/176 (69.89%), Query Frame = 0
Query: 8 VNVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
V + +L+ GV AADI KL EAG + + VP K LLAIKG SEAK +KI +A+KL F T TE ++R I++TTG+K D +L GG+E+GSITE +GEFRTGKTQ+ HTLAVTCQL D GGG+GKC+Y+DTEG FRPER+ +AER+GL LDN+ ARAY
Sbjct: 25 VPIQKLESAGVAAADIKKLREAGFHSVESIQFVPKKALLAIKGISEAKADKITEAAQKLV---PFGFTTATEFHQKRSEIIQLTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPIDMGGGEGKCLYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAY 197
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|1023187284|ref|XP_016289956.1| (DNA repair protein RAD51 [Kalmanozyma brasiliensis GHG001] >gi|557995421|gb|EST04967.1| DNA repair protein RAD51 [Kalmanozyma brasiliensis GHG001]) HSP 1 Score: 196.438 bits (498), Expect = 3.279e-58 Identity = 97/174 (55.75%), Postives = 121/174 (69.54%), Query Frame = 0
Query: 10 VSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
VS+L+ G++ +D KL EAG +T + P K LL +KG SEAK +K+ + A KL F T TE +R I ITTG+K DAILGGG+E+GSITE YGEFRTGK+QL HTLAVTCQL D GGG+GKC+Y+DTEG FRP R+ +AER+GLD + LDN+ ARAY
Sbjct: 25 VSKLEDFGISGSDCKKLAEAGYNTVESIAFTPKKNLLLVKGISEAKADKVLAEAAKLV---PMGFTTATEFHARRNELISITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPVRLLAVAERYGLDGNEVLDNVAYARAY 195
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|955492555|ref|XP_014657035.1| (DNA repair protein RAD51 [Moesziomyces antarcticus] >gi|674219774|dbj|GAK64692.1| DNA repair protein RAD51 [Moesziomyces antarcticus]) HSP 1 Score: 195.667 bits (496), Expect = 4.997e-58 Identity = 97/174 (55.75%), Postives = 122/174 (70.11%), Query Frame = 0
Query: 10 VSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
VS+L+ G++++D KL EAG +T + P K LL +KG SEAK +KI + A KL F T TE +R I ITTG+K DAILGGG+E+GSITE YGEFRTGK+QL HTLAVTCQL D GGG+GKC+Y+DTEG FRP R+ +AER+GL+ + LDN+ ARAY
Sbjct: 25 VSKLEDFGISSSDCKKLAEAGYNTVESIAFTPKKNLLLVKGISEAKADKILAEAAKLV---PMGFTTATEFHARRNELISITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPTRLLAVAERYGLNGEEVLDNVAYARAY 195
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|573026714|gb|ETS59968.1| (dna repair protein rad51 [Moesziomyces aphidis DSM 70725]) HSP 1 Score: 195.667 bits (496), Expect = 5.161e-58 Identity = 97/174 (55.75%), Postives = 122/174 (70.11%), Query Frame = 0
Query: 10 VSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
VS+L+ G++++D KL EAG +T + P K LL +KG SEAK +KI + A KL F T TE +R I ITTG+K DAILGGG+E+GSITE YGEFRTGK+QL HTLAVTCQL D GGG+GKC+Y+DTEG FRP R+ +AER+GL+ + LDN+ ARAY
Sbjct: 25 VSKLEDFGISSSDCKKLAEAGYNTVESIAFTPKKNLLLVKGISEAKADKILAEAAKLV---PMGFTTATEFHARRNELISITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPTRLLAVAERYGLNGEEVLDNVAYARAY 195 The following BLAST results are available for this feature:
BLAST of EWM24257.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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