EWM24257.1, cds6427 (CDS) Nannochloropsis gaditana

Overview
NameEWM24257.1
Unique Namecds6427
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:521353..521416 -
Alignment locationCM002468.1:520736..521227 -
Alignment locationCM002468.1:520350..520461 -
Alignment locationCM002468.1:520092..520101 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24257.1
Productdna repair protein DMC1
Orig transcript idgnl|cribi|Naga_100020g36.5390.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:521353..521416 -
CM002468.1supercontigCM002468.1:520736..521227 -
CM002468.1supercontigCM002468.1:520350..520461 -
CM002468.1supercontigCM002468.1:520092..520101 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003677DNA binding
GO:0005524ATP binding
GO:0008094DNA-dependent ATPase activity
Vocabulary: Biological Process
TermDefinition
GO:0000003reproduction
GO:0007049cell cycle
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0016043cellular component organization
GO:0006281DNA repair
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR010995DNA_repair_Rad51/TF_NusA_a-hlx
IPR020588RecA_ATP-bd
IPR013632DNA_recomb/repair_Rad51_C
IPR027417P-loop_NTPase
Homology
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|585105648|gb|EWM24257.1| (dna repair protein DMC1 [Nannochloropsis gaditana])

HSP 1 Score: 460.685 bits (1184), Expect = 3.969e-164
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query:    1 MDVDDTMVNVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAYASVRAIKTSSGFNRRAWSFPDADNRLNHRLVPGRLLWTRRTI 225
            MDVDDTMVNVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAYASVRAIKTSSGFNRRAWSFPDADNRLNHRLVPGRLLWTRRTI
Sbjct:    1 MDVDDTMVNVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAYASVRAIKTSSGFNRRAWSFPDADNRLNHRLVPGRLLWTRRTI 225          
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|298711280|emb|CBJ26525.1| (Meiotic recombination protein DMC1/LIM15 homolog, putative [Ectocarpus siliculosus])

HSP 1 Score: 199.904 bits (507), Expect = 9.518e-61
Identity = 99/184 (53.80%), Postives = 132/184 (71.74%), Query Frame = 0
Query:    1 MDVDDTMVNVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKL-TGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
            +D  D+   V EL   G+  A+I KL EA ++T G V   P K LL I+GFS+A V KI+ +A K+ T G+S  F+TG + R+ R++ IK+ TG+K  DA+LGGG+E+GSITE +GEFR+GKTQL HTL VT QL  + GG +G+ +Y+DTEGNFRPER+E IAERFGLD   TL+N+IV R +
Sbjct:   23 VDDVDSFQCVEELTNAGIKMAEINKLKEANLATVGAVLATPTKRLLTIRGFSDATVAKIQLAAAKVDTSGSSGMFKTGLQCRQAREKVIKVHTGSKQLDALLGGGIETGSITEFFGEFRSGKTQLCHTLCVTSQLSKESGGAEGRVVYMDTEGNFRPERVEAIAERFGLDPTETLENVIVTRVF 206          
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|528218270|gb|EPY20884.1| (meiotic recombination protein DMC1 [Strigomonas culicis] >gi|528238636|gb|EPY29596.1| meiotic recombination protein DMC1 [Strigomonas culicis] >gi|528249014|gb|EPY33872.1| meiotic recombination protein DMC1 [Strigomonas culicis])

HSP 1 Score: 198.364 bits (503), Expect = 7.562e-59
Identity = 106/181 (58.56%), Postives = 130/181 (71.82%), Query Frame = 0
Query:    6 TMVNVSELQKLGVNAADIAKLVEAGISTA---GMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
            T++ + +L + G+ AADI KL +AGI T     M CK   K L  IKG SEAKVEKI  +ARKL+   +  F TGT+  EQR   I ITTG+   D +LGGG+ES +ITEA+GEFRTGKTQ++HTL VTCQL    GGG GK +Y+DTEG FRPERI+ IA+RFGLD +A LDNI+VARAY
Sbjct:   31 TLLEIDQLAEQGIAAADITKLKQAGIFTVPGIHMQCK---KDLALIKGLSEAKVEKIIEAARKLS---NTGFVTGTKYLEQRASVIHITTGSTALDQMLGGGIESRAITEAFGEFRTGKTQIAHTLCVTCQLPSSMGGGNGKAVYVDTEGTFRPERIKPIADRFGLDVNAILDNILVARAY 205          
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|76157801|gb|AAX28612.2| (SJCHGC08668 protein, partial [Schistosoma japonicum])

HSP 1 Score: 194.126 bits (492), Expect = 8.616e-59
Identity = 100/184 (54.35%), Postives = 125/184 (67.93%), Query Frame = 0
Query:    3 VDDTMVNVSELQKL---GVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
            VDD       +QKL   G+ AAD+ KL EAG  T   +  VP K LLA+KG SEAK +KI  +A+KL       F T TE  ++R   I++TTG+K  D +L GG+E+GSITE +GEFRTGKTQ+ HTLAVTCQL  D GGG+GKC+Y+DTEG FRPER+  +AER+GL     LDN+  ARAY
Sbjct:    7 VDDESCGPLLIQKLESAGIAAADVKKLREAGFHTVESIQFVPKKTLLAVKGISEAKADKIIEAAQKLV---PFGFTTATEFHQKRSEIIQLTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPIDMGGGEGKCLYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAY 187          
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|1026977364|ref|XP_016608808.1| (DNA repair protein RAD51 [Spizellomyces punctatus DAOM BR117] >gi|907095104|gb|KND00769.1| DNA repair protein RAD51 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 197.593 bits (501), Expect = 1.150e-58
Identity = 95/176 (53.98%), Postives = 123/176 (69.89%), Query Frame = 0
Query:    8 VNVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
            + +S+L++ G+++ D+AKL  AG  T   +   P K LLAIKG SEAK +KI + A KL       F T TE  ++R   I + TG+K  D +LGGG+E+G+ITE +GEFRTGKTQL HTLAV CQL  D GGG+GKC+Y+DTEG FRPER+  +AERFGL+ D  LDN+  ARAY
Sbjct:   23 LKISKLEEFGISSGDVAKLASAGYHTVEAIAYTPKKQLLAIKGISEAKADKILTEAAKLV---PMGFTTATEFYQRRNEIITLQTGSKELDKLLGGGIETGAITEIFGEFRTGKTQLCHTLAVICQLPIDMGGGEGKCLYIDTEGTFRPERLLAVAERFGLNGDEVLDNVAYARAY 195          
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|1183329578|gb|ORX59322.1| (hypothetical protein BCR36DRAFT_579906 [Piromyces finnis])

HSP 1 Score: 197.208 bits (500), Expect = 1.175e-58
Identity = 99/178 (55.62%), Postives = 123/178 (69.10%), Query Frame = 0
Query:    8 VNVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAYAS 185
            + VS+L++ G++A DI KLV  G  T   +   P K LL IKG SEAK +KI   A KL       F T TE  ++R   I ITTG+K  D +LGGG+E+GSITE +GEFRTGKTQL HTLAVTCQL  D GGG+GKC+Y+DTEG FRPER+  +AER+GL+ +  LDN+  ARAY S
Sbjct:   23 IPVSKLEECGISANDIKKLVAEGYHTVESIAYTPKKQLLVIKGISEAKADKILMEATKLV---PMGFTTATEFHQRRADMISITTGSKELDTLLGGGLETGSITEIFGEFRTGKTQLCHTLAVTCQLPLDMGGGEGKCLYIDTEGTFRPERLLAVAERYGLNGEEVLDNVAYARAYNS 197          
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|358332289|dbj|GAA50958.1| (DNA repair protein RAD51 [Clonorchis sinensis])

HSP 1 Score: 196.438 bits (498), Expect = 3.142e-58
Identity = 98/176 (55.68%), Postives = 123/176 (69.89%), Query Frame = 0
Query:    8 VNVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
            V + +L+  GV AADI KL EAG  +   +  VP K LLAIKG SEAK +KI  +A+KL       F T TE  ++R   I++TTG+K  D +L GG+E+GSITE +GEFRTGKTQ+ HTLAVTCQL  D GGG+GKC+Y+DTEG FRPER+  +AER+GL     LDN+  ARAY
Sbjct:   25 VPIQKLESAGVAAADIKKLREAGFHSVESIQFVPKKALLAIKGISEAKADKITEAAQKLV---PFGFTTATEFHQKRSEIIQLTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPIDMGGGEGKCLYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAY 197          
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|1023187284|ref|XP_016289956.1| (DNA repair protein RAD51 [Kalmanozyma brasiliensis GHG001] >gi|557995421|gb|EST04967.1| DNA repair protein RAD51 [Kalmanozyma brasiliensis GHG001])

HSP 1 Score: 196.438 bits (498), Expect = 3.279e-58
Identity = 97/174 (55.75%), Postives = 121/174 (69.54%), Query Frame = 0
Query:   10 VSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
            VS+L+  G++ +D  KL EAG +T   +   P K LL +KG SEAK +K+ + A KL       F T TE   +R   I ITTG+K  DAILGGG+E+GSITE YGEFRTGK+QL HTLAVTCQL  D GGG+GKC+Y+DTEG FRP R+  +AER+GLD +  LDN+  ARAY
Sbjct:   25 VSKLEDFGISGSDCKKLAEAGYNTVESIAFTPKKNLLLVKGISEAKADKVLAEAAKLV---PMGFTTATEFHARRNELISITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPVRLLAVAERYGLDGNEVLDNVAYARAY 195          
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|955492555|ref|XP_014657035.1| (DNA repair protein RAD51 [Moesziomyces antarcticus] >gi|674219774|dbj|GAK64692.1| DNA repair protein RAD51 [Moesziomyces antarcticus])

HSP 1 Score: 195.667 bits (496), Expect = 4.997e-58
Identity = 97/174 (55.75%), Postives = 122/174 (70.11%), Query Frame = 0
Query:   10 VSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
            VS+L+  G++++D  KL EAG +T   +   P K LL +KG SEAK +KI + A KL       F T TE   +R   I ITTG+K  DAILGGG+E+GSITE YGEFRTGK+QL HTLAVTCQL  D GGG+GKC+Y+DTEG FRP R+  +AER+GL+ +  LDN+  ARAY
Sbjct:   25 VSKLEDFGISSSDCKKLAEAGYNTVESIAFTPKKNLLLVKGISEAKADKILAEAAKLV---PMGFTTATEFHARRNELISITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPTRLLAVAERYGLNGEEVLDNVAYARAY 195          
BLAST of EWM24257.1 vs. NCBI_GenBank
Match: gi|573026714|gb|ETS59968.1| (dna repair protein rad51 [Moesziomyces aphidis DSM 70725])

HSP 1 Score: 195.667 bits (496), Expect = 5.161e-58
Identity = 97/174 (55.75%), Postives = 122/174 (70.11%), Query Frame = 0
Query:   10 VSELQKLGVNAADIAKLVEAGISTAGMVCKVPLKVLLAIKGFSEAKVEKIRSSARKLTGGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
            VS+L+  G++++D  KL EAG +T   +   P K LL +KG SEAK +KI + A KL       F T TE   +R   I ITTG+K  DAILGGG+E+GSITE YGEFRTGK+QL HTLAVTCQL  D GGG+GKC+Y+DTEG FRP R+  +AER+GL+ +  LDN+  ARAY
Sbjct:   25 VSKLEDFGISSSDCKKLAEAGYNTVESIAFTPKKNLLLVKGISEAKADKILAEAAKLV---PMGFTTATEFHARRNELISITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPTRLLAVAERYGLNGEEVLDNVAYARAY 195          
The following BLAST results are available for this feature:
BLAST of EWM24257.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105648|gb|EWM24257.1|3.969e-164100.00dna repair protein DMC1 [Nannochloropsis gaditana][more]
gi|298711280|emb|CBJ26525.1|9.518e-6153.80Meiotic recombination protein DMC1/LIM15 homolog, ... [more]
gi|528218270|gb|EPY20884.1|7.562e-5958.56meiotic recombination protein DMC1 [Strigomonas cu... [more]
gi|76157801|gb|AAX28612.2|8.616e-5954.35SJCHGC08668 protein, partial [Schistosoma japonicu... [more]
gi|1026977364|ref|XP_016608808.1|1.150e-5853.98DNA repair protein RAD51 [Spizellomyces punctatus ... [more]
gi|1183329578|gb|ORX59322.1|1.175e-5855.62hypothetical protein BCR36DRAFT_579906 [Piromyces ... [more]
gi|358332289|dbj|GAA50958.1|3.142e-5855.68DNA repair protein RAD51 [Clonorchis sinensis][more]
gi|1023187284|ref|XP_016289956.1|3.279e-5855.75DNA repair protein RAD51 [Kalmanozyma brasiliensis... [more]
gi|955492555|ref|XP_014657035.1|4.997e-5855.75DNA repair protein RAD51 [Moesziomyces antarcticus... [more]
gi|573026714|gb|ETS59968.1|5.161e-5855.75dna repair protein rad51 [Moesziomyces aphidis DSM... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6443rna6443Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications