rna6442, rna6442 (mRNA) Nannochloropsis gaditana

Overview
Namerna6442
Unique Namerna6442
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length954
Alignment locationCM002468.1:519377..520590 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100020g37.5407.mrna
Orig protein idgnl|cribi|Naga_100020g37.5407
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:519377..520590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100020g37gene6224Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6442rna6442-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24274.1cds6426Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6442 ID=rna6442|Name=rna6442|organism=Nannochloropsis gaditana|type=mRNA|length=954bp
ATGTCACTCGTATTTCAGTCTTCTTTATTATCTAAACAAAAAGGCATCTT
ACTGAAGTTCCCCCGCTACAAGGGTGCACATTCTCGCTTAGACCGTCAGT
TACATACCCTGTACCGTGATGCCCATATCATTGTCATTAGTAAGGCCGCA
GGGATCCTTTCGCAGCCCGACGAGAGAAGCATTGGTGGGGCGACTGACCT
ACTAGGTCTTGTGCGAGCATACATCAAAAAATCTGCAGGGAAACAGAATG
GTGCTTACGTGGGCCTGGTGCATCGTCTCGATAGGAATGTAACAGGTTGC
ATGGTCTTCGCGTTGCGATCAAAAGCGGCCGCACGCTTATCTTATGACTT
CAAAAATAGGTTGGTTCGGAAGATGTACGTGGCAATGGTAGTGGGGACAC
TGTCTGGCGAGGGTTTGCTCACAAACTCCCTCGTGCACGGCCGAAACAAC
GTGGCTCGCGTGATGAATCGCGTGAATGAGTCATTGCAACCGCCAAGCGT
GCCATCGAACAAGAAATTGGAGCAAGCACAATTATATTTCAAATCTCTGG
GCACTTTCTACCATCCACGGGGGGGGGCACAAACATTGCTTCAAATACAA
CTTATCTCAGGAAAAAAACATCAGATCCGAGCACAACTATCCCATCTCGG
CCATCCAATCGTAGGCGATGTCAAATACAAGGCTCCTACTCACTTTCGGG
ACAAATTTATGGCCTTGCATTGCTACAGTCTTACCCTCCGCCATCCATCG
CAGGGAAGTAGGATTGTGAAAGAGCTAACAAGCGGCGAAGGTGTTTGTGG
GGACCCCAAGGGGCGAAAACTGGACCACGAGAAACGTCAGATAATGGATT
TTTATGCCCCTCTGCCCGAATCGTGGCAAGCGAGGTTCGGAGCGGACGTA
GTTAGATGTGTGCACGAGTTGCCAAGGGACATTGGTGATATCGCGCTTGC
ATAA
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protein sequence of rna6442

>rna6442-protein ID=rna6442-protein|Name=rna6442|organism=Nannochloropsis gaditana|type=polypeptide|length=129bp
MVSYNRHHRGPEESCIMCLHVWVSLAIHVPSSPSGYKVVPNLRRGTYWPH
MGLSFHSHSSHSSAMPPSVIANCASASGIDGESTTLATRQFSRPFLRWMR
VHEACANTLPPTGLTTGAKRLIAPGSAVH
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mRNA from alignment at CM002468.1:519377..520590+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6442 ID=rna6442|Name=rna6442|organism=Nannochloropsis gaditana|type=mRNA|length=1214bp|location=Sequence derived from alignment at CM002468.1:519377..520590+ (Nannochloropsis gaditana)
AGGACTGTCCCTTCCGATGGTCAGTTACAATAGACACCATAGGTAAATCG
ATAATTTTTTCCTCAACGTTTAAGTTTGCGGCGATGCCCGTTTTAACCTC
CCCTTATCTGGTGAGGTGGCAGTTGGTGTGAGCGTGGCAAATAGAAACAT
CCCACATGAGGATTCAAGCGGAAACGGAAACATTGCAACTAGGGAAACTG
TGTCGTGAATCTTCAGACTTTTCACAGACTGATAGATCCTCTTTAACGCT
TGACTCTTTCCCCATGACAGAGGCCCTGAAGAGTCGTGCATTATGTGTCT
TCACGTATGGGTTTCCTTGGCCATTCATGTTCCCTCCAGTCCGAGTGGCT
ACAAAGTCGTTCCAAATCTGCGTAGAGGTACATACTGGCCTCACATGGGT
TTATCTTTTCATTCACATAGTTCTCACTCGTCAGCGATGCCACCGTCCGT
AATAGCAAATTGTGCTTCAGCCTCGGGCATTGACGGCGAATCCACGACTT
TGGCGACGCGGCAGTTTTCACGACCCTTTTTAAGATGGATGCGGGTACAT
GAAGCGTGTGCTAACACGTTACCGCCTACTGGCTTGACGACTGGGGCAAA
GAGACTCATAGCGCCTGGATCGGCGGTGCATTGATTGACAAGAAAGACGG
CAATGTTCATGTCTTCGGCCAAACGCGTCAGTGCGGAAAGGTGTTGTCCA
AGCTTCTGCTGACGTTCAGATAGTTCTGATAGGATGAGCGGTGTATGAAA
GGGGGATGAGTAGGAGTGGATGGGTGGCAAAAAAGCCTGATGAAAAAACT
TTTTTGACTGTTCCATGACCTCGATCAAGCGCGACCGAGTTGTGACGAGA
AATTTAACCGCAGATGAGAGCACTTATGTTGTTCAAGCCAAAGTATATAT
AAAGGCAAAGTCAGAggtaaaaagaaaaaaagggggacgggggaaacAGG
TGATCAAAGAATTATTTACGTACCGCCGCGTCCAGAGTAATCGACCCGGA
ACAAGGCGATGATTGAGTCGATTATCAGCATCCGGAAAGGACCATGCTCT
GCGATTAAAGCCGCTAGAGGTTTTAATAGCTCGCACTGTTGATCTGTCGA
AAATTATTTTTGCCGTGGGTGGTAAAATTAAAATCAGAGGGTTTAGCTAT
ATCTGAGGACAGGGTAAAGCGAAGGGGCTGCAAAGACAAAGAAGCATGCA
TATATTCACTGACG
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Coding sequence (CDS) from alignment at CM002468.1:519377..520590+

>rna6442 ID=rna6442|Name=rna6442|organism=Nannochloropsis gaditana|type=CDS|length=780bp|location=Sequence derived from alignment at CM002468.1:519377..520590+ (Nannochloropsis gaditana)
ATGGTCAGTTACAATAGACACCATAGAGGCCCTGAAGAGTCGTGCATTAT
GTGTCTTCACGTATGGGTTTCCTTGGCCATTCATGTTCCCTCCAGTCCGA
GTGGCTACAAAGTCGTTCCAAATCTGCGTAGAGGTACATACTGGCCTCAC
ATGGGTTTATCTTTTCATTCACATAGTTCTCACTCGTCAGCGATGCCACC
GTCCGTAATAGCAAATTGTGCTTCAGCCTCGGGCATTGACGGCGAATCCA
CGACTTTGGCGACGCGGCAGTTTTCACGACCCTTTTTAAGATGGATGCGG
GTACATGAAGCGTGTGCTAACACGTTACCGCCTACTGGCTTGACGACTGG
GGCAAAGAGACTCATAGCGCCTGGATCGGCGGTGCATTGAATGGTCAGTT
ACAATAGACACCATAGAGGCCCTGAAGAGTCGTGCATTATGTGTCTTCAC
GTATGGGTTTCCTTGGCCATTCATGTTCCCTCCAGTCCGAGTGGCTACAA
AGTCGTTCCAAATCTGCGTAGAGGTACATACTGGCCTCACATGGGTTTAT
CTTTTCATTCACATAGTTCTCACTCGTCAGCGATGCCACCGTCCGTAATA
GCAAATTGTGCTTCAGCCTCGGGCATTGACGGCGAATCCACGACTTTGGC
GACGCGGCAGTTTTCACGACCCTTTTTAAGATGGATGCGGGTACATGAAG
CGTGTGCTAACACGTTACCGCCTACTGGCTTGACGACTGGGGCAAAGAGA
CTCATAGCGCCTGGATCGGCGGTGCATTGA
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Synonyms
Publications