rna6433, rna6433 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6433
Unique Name	rna6433
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3006
Alignment location	CM002468.1:504339..507043 +

Link to JBrowse

Properties


Property Name	Value
Product	protein of unknown function DUF1214
Orig transcript id	gnl\|cribi\|Naga_100020g45.5406.mrna
Orig protein id	gnl\|cribi\|Naga_100020g45.5406
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:504339..507043 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g45	gene6216	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6433	rna6433-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24273.1	cds6417	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:504339..507043+
coding sequence from alignment at CM002468.1:504339..507043+

mRNA sequence

>rna6433 ID=rna6433|Name=rna6433|organism=Nannochloropsis gaditana|type=mRNA|length=3006bp
ATGTTCGCAGCATCTGTCTCGGCCGTCTTGAAGTCAGCGCGAAGAGGTGG
TCGTTTCGGTTTTCATTTACAACCTTGGCCTCCATCATTTGTCCCTACAC
TTGCTTTAAACCCGCGACCCGTGCCAGAAAGGGGTAGCAGATGGACCTTG
CAAGCCGCCCGAGGGCTCAGCAAATTTTCGAGAGATGGTGGAGGTGGAGC
CCGGAGTATGCGGAACAAGAAGACACGCTTGAGTGTCAAACTCTCGTCAA
GGCAAGGTGATGGTAGCGACGACGACGGGATTCCTCGTGAGCCCGAAATT
CTTCGGGACTTCGGCGGTGGGAATGGTGAGAAGATGGGCGGTGAATCACA
AAGCATATCAGCTGCCGGTGGGGATAGCGGGTACGGGGACAAGGTCCTGC
CCACTGAGCTGAACTTGGAGCTTTCCTCCTCCTTCATGCAGTATGCCATG
TCCACTATCCTAGGCCGAGCCCTTCCCGATGCTCGAGACGGCCTCAAACC
AGTTCACCGCCGCATTCTCTTCGCCATGCACGTCCTAAATTTGCAACCTG
AATCCTCATACCGCAAATGCGCGCGCGTGGTTGGCGAGGTCTTAGGAAAG
TACCATCCTCACGGGGATGCCTCAGTCTACGATGCTTTAGTGCGCATGGC
TCAAGATTTTGTTATGAGCGCGCCATTGGTGGCGGGGCATGGTAACTTTG
GGTCCGTGGACGACGACCCGGCCGCAGCCATGCGTTACACGGAGTGCAAG
CTGTCGCTCCTCGCGCGAGACGCCTTGCTAAAAGACATCAATTTGGACAC
GGTCGACTTCGCACCAAATTTCGACGGCAATGAGGTAGAGCCACTGGTTC
TACCGGCACGTGTCCCGATGCTTCTGTTAAACGGTGCCACGGGCATCGCC
GTTGGCATGGCAACCAACGTACCACCCCACAACCTGGGCGAGGTGCTAGA
CGGGACCTTGGCGTTGATCGAGGACCCATCATTATCCGACGACAAGCTTT
TGCGTCTCATACCAGCGCCCGACTTTCCCACCGGCGGGGACATCATGGGC
TTGGAGGGCCCTCGTAAGCTGTACACGAATGGTTCAGGTTCCATCGTGAT
GCGGGCCAAAACGCACATGGAGACCATACCCATGGGGGGGGGGCGGCAAG
TACGCAACGCAATTGTGGTGACAGAGCTTCCATATCAAGTCAACAAAGCT
TCTCTCCTGGAAAAAATCGCAGATATGGTGAATGAGAAGAAAATGGAGGG
CATTTCCGACCTGCGAGACGAGAGCGACCGGGAGGGCATCCGTGTTGTCA
TTGAATTGAAGCGCGATGCCATGCCTAGCGTGGTGGAAAATAATCTCTTC
AAAAAGACTGCTTTGCAAAGCTCTTTCCCGGGCAATTTTCTGGCCCTCGC
CAACGATGGGAGGCAGCCGCAGCGCCTGACGCTCAGAGAATCGCTTCAAT
CCTTCATCGACTTCCGCTTCAAGACAATTCGACGGCGCACGCAGCACGAA
TTGAGTAAGTTGGAGTCGCGTGATCACGTGGTCGAGGGTCTTATTCGGGC
GCTAGATCGGATTGACGACGTCGTTGAGCTTGTTCGCCGAGCGAAAGACA
CAGCGGCCGCCAAGGCGACCTTAATGGGATCGCAGTACGACATGTCCGAG
GCTCAGGCTCAAGCAATACTGGCCCTTACCTTGGGGCGGTTGACAGCTTT
AGAGGATGCCAAACTTCGGGCCGAGAGGGAACAGCTCCGGGGTCAAATCG
AGGACTTCCAGGCCATGATGCGACAAGACGAGAAGGTGTTCGATGTCATG
AAACAGGAGCTCCGGGAAATTCGCGCGAAGCACGCGGTGCCCCGTCGGTC
TTCTATCCGCGCCCATGCCGGCGCTTTAACAGAGCTTGACCTTTTGGCCA
ACGATCGCTCAGTCATGATGGTAACCGAGGCTGGCTACATAAAACGCATG
CCTCTTGATGATTTTGAGCAGCAGCGCCGCGGAACTCGAGGCAAGGCAGG
GGCGCGTATGTCCCAGGACGATCTGGTCAACCACTTTTTTGCTTGCAACG
ATCATGATCACGTCGTTTTTATTTCTGAAAAAGGGGTTGCCTTTGGCATC
AGGGCTTTCCAGGTCCCTGTCGCCTCTCGTGTCTCCAAGGGCGTGCCCCT
CCCCCAGGTGCTGCCCCTCTCTTCGGACGACCATGTCTCAAGCGTCATAC
CTCTAGGGGAGAGTTTTCAGGCGGACGAGTTCCTTGTTCTACTAACTAAG
CAGGGCTTTATCAAGAAGACTCCAGTGGATGCTTTCAAAAAATTAACTTC
ACGTGGCCTCATCGCAATCAGTCTAGGCGAAGGCGACACTCTCGGGTGGG
CTCGGCGTTGCACTGACCAGGATGACATCCTAATATCTACACGGAAGGGC
TACTCCATGCGTTTTGCTTCGGCGGATTTGAAACCTACGGGACGCACCTC
TCGGGGTTGCAGCGCCATCAAGCTTCGTAAAACGGACGAGATGGTTGATA
TTACCGTGCTGCGTCCCGATGCTGCTGTCGATGTCGATGGGCCCGGTGAT
TGTGGAAGTGGATCAAATGGACAGTATTTATTGGCCGTGACAACAGCCGG
GTACGGGAAGCGAGTCAGTGCTGACAGTTTCAAGGTACAGAGGCGTGGCG
GTATGGGTGTTATCGCCATCAAATTCAAGGCCGGGAGTGGAGACTCGTTG
GCATGCATGCGCGCTTGCTCCGACGACTACGAGGTTGTGCTGTCTACTCA
AAAAGGTACAATCGTGCGTCAACGCGTGGCTGCTATCGCTTTGCAGAGTC
GCACGGCTACAGGTGTCCGTGTGCAACGCCTAGACGAGGGAAACATTATC
AAGAGCGTGGCAATGCTACCCGCGGATAGCGACGACGATGACGAAGACGG
CTCCCTGGCAAATAAAGCTGATGCCGTTATGAAGGATCTAAGGTACGAAA
ACGAAGCAGCTGTTGTCATGTCCATAGGGAGCCAAACGGGGGTGGTGGAT
GCGTAA

protein sequence of rna6433

>rna6433-protein ID=rna6433-protein|Name=rna6433|organism=Nannochloropsis gaditana|type=polypeptide|length=524bp
MSGSSPSSSEGFRWCEVRCNKWQRAGAERTRGWLTFSMHVLVFILMSFIF
LKYTGLVLRNPAPLCSWRLSQSLNVAWTDTQASHHSMVMFLNEGEEYTVE
SESLPYSRFFSFQTYSLDGKTSYGILRDAEIVSQNGPNLYANMSAAAGGE
KQGGYTLYLTPDGSKGYPNELQTLKYGQKSGFFVLIFRIYDVGDFPHPMA
PWAHLSRGDARQPQRWGWTPPPRVSVRRTMRQGSWREIPSCVTRQGPGGK
LWSKTYILGLTNRLEDIFPPSHSYTGFIKPLRQNNFHLPHDHLFSSVDTR
TLVSAAAIPAVDVGDVWARVEAKLPRTPSSLYSPPFIANQSDYDVRYISF
TSASRAFPLWTFETLTDKSIRQHYESRLRGPHEQWDGRFSLWIGPVNAPP
PEQARLENALIMRWGEVARPALLYNQLLSSSRAASGAAPPTLANVVVNEC
PRAAEHDNHDEEDEDGSFINEGNVCCLSEPRGMPTFCRMPEFLHLNLREY
FPAVTFFSYETQDEHGPTLRKISM

mRNA from alignment at CM002468.1:504339..507043+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6433 ID=rna6433|Name=rna6433|organism=Nannochloropsis gaditana|type=mRNA|length=2705bp|location=Sequence derived from alignment at CM002468.1:504339..507043+ (Nannochloropsis gaditana)
AACGTAACAAGGTACATTTAGGTACAAGCAATAATTGACCACCAACAAGA
ACAACACAAACGCCGCATTCTGAAAGTGTAATCCCCCCAAAGCCGAGCAA
AGAACAACTTTCTATCAAACGGGTTCGACAGAGTCGGGCTTCGGACTAGC
AGGAATTTGTTGCACGAATAAGTTGCATGCATGCAGCCGCCATAGACACT
AAAGGCATCTGAAGATCGATTGTTGATGTCTGGAAGCTCACCCTCAAGTT
CCGAAGGCTTTCGCTGGTGCGAGGTGCGGTGCAATAAGTGGCAACGCGCT
GGAGCTGAGAGGACACGGGGATGGCTTACATTTTCCATGCATGTACTAGT
ATTTATTCTCATGTCGTTTATTTTTCTAAAATATACTGGACTCGTTTTGC
GAAACCCGGCACCTTTATGCAGCTGGCGGCTTTCCCAGAGTTTGAATGTT
GCATGGACTGATACTCAAGCTTCTCACCATTCCATGGTTATGTTCCTAAA
TGAAGGCGAGGAGTATACAGTTGAAAGCGAATCGCTACCTTACTCTCgat
ttttctcctttcaaACGTACTCCCTTGACGGTAAAACGTCCTACGGAATT
CTGCGAGATGCTGAGATTGTTTCCCAAAACGGCCCAAATCTATACGCAAA
TATGAGTGCAGctgcgggcggggagaagcaAGGTGGATACACGCTTTACT
TAACACCGGATGGATCCAAGGGATACCCAAACGAATTGCAAACCCTCAAA
TATGGGCAGAAAAGCGGCTTCTTCGTTCTCATTTTCCGCATTTACGATGT
CGGCGATTTTCCCCATCCGATGGCGCCGTGGGCCCATCTGTCTCGAGGCG
ATGCCCGACAACCACAGCGATGGGGCTGGACACCGCCGCCTCGAGTGTCT
GTCCGTCGTACGATGCGCCAAGGGTCGTGGCGTGAGATTCCGTCTTGCGT
AACgcgccaaggccctggcggaaAACTCTGGAGCAAAACATATATTCTCG
GCCTCACGAACCGCCTAGAGGATATCTTCCCTCCAAGCCACTCATATACA
GGATTTATCAAGCCTCTTCGTCAGAACAATTTCCATCTGCCGCACGATCA
CTTGTTTTCTTCTGTAGACACTCGGACTTTGGTATCTGCGGCGGCAATCC
CCGCTGTTGACGTGGGTGATGTATGGGCTCGTGTTGAGGCCAAACTCCCA
CGCACGCCTTCCTCACTCTATTCGCCACCATTCATAGCCAACCAGAGTGA
TTATGACGTACGCTATATTTCGTTTACCAGCGCCTCTCGTGCCTTTCCTT
TATGGACCTTCGAGACCCTGACGGACAAGAGCATACGGCAGCATTACGAG
TCGCGCCTGCGAGGCCCCCACGAGCAGTGGGACGGACGCTTTTCTCTTTG
GATCGGGCCTGTgaatgctcctcctccggagCAAGCTCGTCTCGAAAATG
CTTTAATCATGAGATGGGGTGAGGTCGCAAGACCCGCTCTTCTCTACAAT
CAGCTTTTGTCTAGCTCCCGAGCAGCGTCAGGCGCAGCTCCACCGACGCT
AGCCAACGTGGTGGTCAATGAATGCCCGCGTGCTGCGGAGCATGATAAcc
acgacgaggaagacgaggacggctCCTTCATCAATGAGGGAAATGTGTGC
TGTTTGAGTGAGCCAAGAGGTATGCCGACCTTTTGTCGAATGCCTGAATT
TTTACATTTAAACCTGCGCGAGTATTTTCCAGCTGTAACTTTCTTCTCAT
ATGAAACTCAGGATGAGCACGGGCCTACACTGCGGAAAATTTCTATGTAA
AAAATCAGTGATAGTATGCTTTGTGATGCGTGTATGTGCAGAAGCATGTC
CAGCGGAGGTCAACGGTCTTTCCGGTGTGAACCAGTTGCCCGTTCCAACA
CACTGGTGCCGCGACAGTCAAATGTAGATAAATGCGCGCTTTCGAAGGAT
TGATAATAACAAGTACCTTCATTTGGCCCCGGTACTGGACGATCGTACGT
TCTCCCATAAACGGCGAGTGCGAAAAGCCTAAACGCACATTTTACTGGTA
TCAGACAACAACATTTTGAAAGCCATCTGCATGCCATGTGGGTCCGCAAT
ACCCTGATTTGCCATCGTATATTCTTTGTGAATAGATGcaatattttctt
ttttccaggCCCTTACTGTCAATACCTGGATACACATGACGATAAATGAT
GCACAATATATGCGAGGCATCCCCGAAGGGTATTCCACACCCTTTCCAAT
GATGATGACTTTTCGACATTGCTTAAAAGCTATTGTAATGGATACTACAT
ATAATCTCATTAAACAGCAATGCATGATTTTTCTTGTGAGGCAATCCGCT
CACGTTGTTTCAGCCTCCTCATCATTCCTCATTCTCAGTTCATGTACACA
GTCCCCACGCAGGCTGCGTGGACTACTTCAGTAACTACCAATGGCCGACC
GGCGATGTATGAGAAGACAAAGTATATAACGAGCACTTTGACTGAACACA
AATTTAAATGGAAGACAGGCCTTGCAGGACATCTCTCCTAGCTTTGCACT
AAGCTTTGCACTATTCTTCTCGTATGAAGATGACCATGATGGACAGTCGG
CCTCAACTCGCATCCCACCctctgctttcttcttcttgtcgtAGACGCAT
TCGGtgcacctcttccaccataTCTTCCGTCACCAAGCTTCCTGACGATA
CCTCG

Coding sequence (CDS) from alignment at CM002468.1:504339..507043+

>rna6433 ID=rna6433|Name=rna6433|organism=Nannochloropsis gaditana|type=CDS|length=1575bp|location=Sequence derived from alignment at CM002468.1:504339..507043+ (Nannochloropsis gaditana)
ATGTCTGGAAGCTCACCCTCAAGTTCCGAAGGCTTTCGCTGGTGCGAGGT
GCGGTGCAATAAGTGGCAACGCGCTGGAGCTGAGAGGACACGGGGATGGC
TTACATTTTCCATGCATGTACTAGTATTTATTCTCATGTCGTTTATTTTT
CTAAAATATACTGGACTCGTTTTGCGAAACCCGGCACCTTTATGCAGCTG
GCGGCTTTCCCAGAGTTTGAATGTTGCATGGACTGATACTCAAGCTTCTC
ACCATTCCATGGTTATGTTCCTAAATGAAGGCGAGGAGTATACAGTTGAA
AGCGAATCGCTACCTTACTCTCgatttttctcctttcaaACGTACTCCCT
TGACGGTAAAACGTCCTACGGAATTCTGCGAGATGCTGAGATTGTTTCCC
AAAACGGCCCAAATCTATACGCAAATATGAGTGCAGctgcgggcggggag
aagcaAGGTGGATACACGCTTTACTTAACACCGGATGGATCCAAGGGATA
CCCAAACGAATTGCAAACCCTCAAATATGGGCAGAAAAGCGGCTTCTTCG
TTCTCATTTTCCGCATTTACGATGTCGGCGATTTTCCCCATCCGATGGCG
CCGTGGGCCCATCTGTCTCGAGGCGATGCCCGACAACCACAGCGATGGGG
CTGGACACCGCCGCCTCGAGTGTCTGTCCGTCGTACGATGCGCCAAGGGT
CGTGGCGTGAGATTCCGTCTTGCGTAACgcgccaaggccctggcggaaAA
CTCTGGAGCAAAACATATATTCTCGGCCTCACGAACCGCCTAGAGGATAT
CTTCCCTCCAAGCCACTCATATACAGGATTTATCAAGCCTCTTCGTCAGA
ACAATTTCCATCTGCCGCACGATCACTTGTTTTCTTCTGTAGACACTCGG
ACTTTGGTATCTGCGGCGGCAATCCCCGCTGTTGACGTGGGTGATGTATG
GGCTCGTGTTGAGGCCAAACTCCCACGCACGCCTTCCTCACTCTATTCGC
CACCATTCATAGCCAACCAGAGTGATTATGACGTACGCTATATTTCGTTT
ACCAGCGCCTCTCGTGCCTTTCCTTTATGGACCTTCGAGACCCTGACGGA
CAAGAGCATACGGCAGCATTACGAGTCGCGCCTGCGAGGCCCCCACGAGC
AGTGGGACGGACGCTTTTCTCTTTGGATCGGGCCTGTgaatgctcctcct
ccggagCAAGCTCGTCTCGAAAATGCTTTAATCATGAGATGGGGTGAGGT
CGCAAGACCCGCTCTTCTCTACAATCAGCTTTTGTCTAGCTCCCGAGCAG
CGTCAGGCGCAGCTCCACCGACGCTAGCCAACGTGGTGGTCAATGAATGC
CCGCGTGCTGCGGAGCATGATAAccacgacgaggaagacgaggacggctC
CTTCATCAATGAGGGAAATGTGTGCTGTTTGAGTGAGCCAAGAGGTATGC
CGACCTTTTGTCGAATGCCTGAATTTTTACATTTAAACCTGCGCGAGTAT
TTTCCAGCTGTAACTTTCTTCTCATATGAAACTCAGGATGAGCACGGGCC
TACACTGCGGAAAATTTCTATGTAA

Synonyms

Publications