EWM24273.1, cds6417 (CDS) Nannochloropsis gaditana

Overview
NameEWM24273.1
Unique Namecds6417
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:504564..506138 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24273.1
Productprotein of unknown function DUF1214
Orig transcript idgnl|cribi|Naga_100020g45.5406.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:504564..506138 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR010621DUF1214
Homology
BLAST of EWM24273.1 vs. NCBI_GenBank
Match: gi|585105664|gb|EWM24273.1| (protein of unknown function DUF1214 [Nannochloropsis gaditana])

HSP 1 Score: 1091.26 bits (2821), Expect = 0.000e+0
Identity = 524/524 (100.00%), Postives = 524/524 (100.00%), Query Frame = 0
Query:    1 MSGSSPSSSEGFRWCEVRCNKWQRAGAERTRGWLTFSMHVLVFILMSFIFLKYTGLVLRNPAPLCSWRLSQSLNVAWTDTQASHHSMVMFLNEGEEYTVESESLPYSRFFSFQTYSLDGKTSYGILRDAEIVSQNGPNLYANMSAAAGGEKQGGYTLYLTPDGSKGYPNELQTLKYGQKSGFFVLIFRIYDVGDFPHPMAPWAHLSRGDARQPQRWGWTPPPRVSVRRTMRQGSWREIPSCVTRQGPGGKLWSKTYILGLTNRLEDIFPPSHSYTGFIKPLRQNNFHLPHDHLFSSVDTRTLVSAAAIPAVDVGDVWARVEAKLPRTPSSLYSPPFIANQSDYDVRYISFTSASRAFPLWTFETLTDKSIRQHYESRLRGPHEQWDGRFSLWIGPVNAPPPEQARLENALIMRWGEVARPALLYNQLLSSSRAASGAAPPTLANVVVNECPRAAEHDNHDEEDEDGSFINEGNVCCLSEPRGMPTFCRMPEFLHLNLREYFPAVTFFSYETQDEHGPTLRKISM 524
            MSGSSPSSSEGFRWCEVRCNKWQRAGAERTRGWLTFSMHVLVFILMSFIFLKYTGLVLRNPAPLCSWRLSQSLNVAWTDTQASHHSMVMFLNEGEEYTVESESLPYSRFFSFQTYSLDGKTSYGILRDAEIVSQNGPNLYANMSAAAGGEKQGGYTLYLTPDGSKGYPNELQTLKYGQKSGFFVLIFRIYDVGDFPHPMAPWAHLSRGDARQPQRWGWTPPPRVSVRRTMRQGSWREIPSCVTRQGPGGKLWSKTYILGLTNRLEDIFPPSHSYTGFIKPLRQNNFHLPHDHLFSSVDTRTLVSAAAIPAVDVGDVWARVEAKLPRTPSSLYSPPFIANQSDYDVRYISFTSASRAFPLWTFETLTDKSIRQHYESRLRGPHEQWDGRFSLWIGPVNAPPPEQARLENALIMRWGEVARPALLYNQLLSSSRAASGAAPPTLANVVVNECPRAAEHDNHDEEDEDGSFINEGNVCCLSEPRGMPTFCRMPEFLHLNLREYFPAVTFFSYETQDEHGPTLRKISM
Sbjct:    1 MSGSSPSSSEGFRWCEVRCNKWQRAGAERTRGWLTFSMHVLVFILMSFIFLKYTGLVLRNPAPLCSWRLSQSLNVAWTDTQASHHSMVMFLNEGEEYTVESESLPYSRFFSFQTYSLDGKTSYGILRDAEIVSQNGPNLYANMSAAAGGEKQGGYTLYLTPDGSKGYPNELQTLKYGQKSGFFVLIFRIYDVGDFPHPMAPWAHLSRGDARQPQRWGWTPPPRVSVRRTMRQGSWREIPSCVTRQGPGGKLWSKTYILGLTNRLEDIFPPSHSYTGFIKPLRQNNFHLPHDHLFSSVDTRTLVSAAAIPAVDVGDVWARVEAKLPRTPSSLYSPPFIANQSDYDVRYISFTSASRAFPLWTFETLTDKSIRQHYESRLRGPHEQWDGRFSLWIGPVNAPPPEQARLENALIMRWGEVARPALLYNQLLSSSRAASGAAPPTLANVVVNECPRAAEHDNHDEEDEDGSFINEGNVCCLSEPRGMPTFCRMPEFLHLNLREYFPAVTFFSYETQDEHGPTLRKISM 524          
BLAST of EWM24273.1 vs. NCBI_GenBank
Match: gi|585109295|gb|EWM27118.1| (hypothetical protein Naga_100046g25 [Nannochloropsis gaditana])

HSP 1 Score: 285.034 bits (728), Expect = 2.479e-85
Identity = 186/536 (34.70%), Postives = 275/536 (51.31%), Query Frame = 0
Query:   15 CEVRCNKWQRAGAERTRGWLTFSMHVLVFILMSFIFLKYTGLVLRNPA----PLCSWRL---SQSLNVAWTDTQASHHSMVMFLNEGEEYTVESESLPYSRFFSFQTYSLDGKTSYGILRDAEIV-SQNGPNLYANMSAAAGGEKQGGYTLYLTPDGSKGYPNELQTLKYGQKSGFFVLIFRIY--DVGDFPHPMAPWAHLSRGDARQPQRWGWTPPPRVSVRRT-MRQGSWREIPSCVTRQGPGGKLWSKTYILGLTNRLEDIFP-PSHSYTGF--IKPLRQNNFHLP----HDHLFSSVDTRTLVSAAAIPAVDVGD---VWARVEAKLPRTPSSLYSPPFIANQSDYDVRYISFTSASRAFPLWTFETLTDKSIRQHYESRLRGPHEQWDGRFSLWIGP--VNAPPPEQARLENALIMRWGE-------VARPALLYNQLLSSSRAASGAAPPTLANVVVNECPRAAEH-------DNHDEEDEDGSFINEGNVCCLSEPRGMPTFCRMPEFLHLNLREYFPAVTFFSYETQD 513
            C+ +C+     G+ R+  +L     VL  ++ + + L    L   +PA    P C+WR      + NVA+ D ++ +H M + +++G+E+ + +ES PY+R+ S+QTY L    S+  LRD +IV   NGPN YAN++AA  G +QGGYTLY+T  G + Y NEL+ L    +SG F L FRIY  +    P P APW HL          WGW PPPR+  +R  ++ G WRE+P C  R+  G KL +          L +I+P PS  + G   + P + NN  LP        F+S D   + S A    V  G    +WARV   LPR P SLY+PP++AN +DYDVRY+S ++  R  P     T+ D  I +HY+ RL  P  +WD +F++W+ P  V +  P Q   EN +IM+WG        V    LLY Q+++ S+          A+ VVN  P A +        +  D   + G  +     CC +E    P  C +PE++   +  Y+P V +F+   +D
Sbjct:   85 CQSKCSN-GTTGSPRSSQYLARRSQVLWTVVFASVALFIKRLQQDSPALINPPYCAWRFVGNHDAWNVAFPDMRSLYHVMQIQMSKGDEFKLVAESFPYARYCSYQTYDLRTLMSHQSLRDVDIVPDANGPNCYANLTAAQEGLRQGGYTLYMTARGDQNYTNELRALPDSIESGQFDLFFRIYVEEALQGP-PQAPWGHLPPYGKDLAFEWGWAPPPRLYAKRAHLKDGEWREVPFCQYRRRKGFKLLAY---------LSEIWPAPSPPFAGHPAVAPNKANNVFLPKYTDRQGKFASKDANYVASVAEPRHVRNGSEAMLWARVTGTLPRVPGSLYTPPYVANATDYDVRYVSLSAVHRTIPFRNHATVADTQITEHYQKRL-PPGVEWDRKFTIWVVPPQVESAYPRQVMDENPVIMKWGASLFGGGIVEYTGLLYRQVMARSQVVGLEQGALSASGVVNIVPEACQSGQVGPHGEGADAAMKAGDPLEMEQFCCSTE---APMECFLPEYVRYRMGPYYPQVEYFTGGPED 605          
BLAST of EWM24273.1 vs. NCBI_GenBank
Match: gi|585107756|gb|EWM25888.1| (hypothetical protein Naga_100054g2 [Nannochloropsis gaditana])

HSP 1 Score: 157.147 bits (396), Expect = 2.072e-37
Identity = 108/304 (35.53%), Postives = 155/304 (50.99%), Query Frame = 0
Query:   29 RTRGWLTFSMHVLVFILMSFIFLKYTGLVLRNPAPLCSWRLSQ---SLNVAWTDTQASHHSMVMFLNEGEEYTVESESLPYSRFFSFQTYSLDGKTSYGILRDAEIV-SQNGPNLYANMSAAAGGEKQGGYTLYLTPDGSKGYPNELQTLKYGQKSGFFVLIFRIYD--VGDFPHPMAPWAH--------LSRGDARQPQRWGWTPPPRVSVRRTMRQ---GSWREIPSCVTRQGPGGKLWSKTYILGLTNRLEDIFPPSHSYTGFIKPLRQNNFHLPH-DHL---FSSVDTRTLVSAAAIPAV 311
            R  G + F+M +L  +  +  +  +    + NP P C+WR      S NVA+ D+ + +H  +M++  GEE  + S SLPY+R+FSFQ+YS+    S   LRD +I+ S NGPN Y N++AA  G KQGGY + +T  G  G+ NEL+ L   + SG+F+L FRIY   VG  P PM+  A           R     PQ WGW  PP V+V+R  R+   G +  +P C  R+        K  I+       D+ PP  +      P    NF LP  D++   F++ D + L S A  P V
Sbjct:   13 RQWGSMEFTMVILAGLGATIFWGHWQKGAILNP-PYCAWRFVSNFASWNVAFPDSTSIYHVSLMYIRRGEEIKISSSSLPYARYFSFQSYSIPDFVSSASLRDVDIIPSGNGPNCYTNLTAAMAGAKQGGYEVVVTSHGDHGHANELRALADDRASGYFILFFRIYQDRVGSLP-PMSELADDMGECFGPRGRYPTETPQEWGWACPPSVAVKRLSRRVGGGKFETLPLCGYRR--------KHGIV-----YNDVTPPVIACPSVRAPNLPFNFFLPSPDYIKQKFANKDAKYLFSCAEAPWV 301          

HSP 2 Score: 100.138 bits (248), Expect = 1.538e-18
Identity = 73/250 (29.20%), Postives = 104/250 (41.60%), Query Frame = 0
Query:  315 DVWARVEAKLPRTPSSLYSPPFIANQSDYDVRYISFTSASRAFPLWTFETLTDKSIRQHYESRLRGPHEQWDGRFSLWIGP------VNAPPPEQARLENALIMRWGEVAR------PALLYNQLLS---------------------------------------------SSRAASGAAPPTLANVVVNECPRAAEHDNHDEEDEDGSFINEGNVCCLSEPRGMPTFCRMPEFLHLNLREYFPAVTFF 507
            ++WARV  +LPRT +SLY PPFIAN SDYDVRY+S +S  R+ P   ++TL D  I +HY  R  GP    D  F LW+GP        +  P   R E  L + WG   R      P +LY Q+LS                                             +S   SGA    LA ++   C      +  + E  +   +    +CC       P +C  P F+   +R+++P V ++
Sbjct:  375 ELWARVTGRLPRTANSLYEPPFIANFSDYDVRYVSLSSVGRSLPYRGYQTLHDADITEHY-LREFGPAWLEDRSFKLWLGPPQYSLAARSHLPGIVREEKGLFLPWGRDFRGEHIPFPGILYRQILSQGQVVGPSTAAGNAGPGNGSGCAWTGERKEGHRGPPAKSLTGVGAASATGSGAPIAGLAEIIPPTC------EKQEGEGTEPLHVLSNYLCCGP---AAPEWCHDPRFVASKMRDFYPLVEYY 614          
BLAST of EWM24273.1 vs. NCBI_GenBank
Match: gi|585107757|gb|EWM25889.1| (hypothetical protein Naga_100054g2 [Nannochloropsis gaditana])

HSP 1 Score: 132.88 bits (333), Expect = 2.496e-29
Identity = 91/241 (37.76%), Postives = 124/241 (51.45%), Query Frame = 0
Query:   89 MFLNEGEEYTVESESLPYSRFFSFQTYSLDGKTSYGILRDAEIV-SQNGPNLYANMSAAAGGEKQGGYTLYLTPDGSKGYPNELQTLKYGQKSGFFVLIFRIYD--VGDFPHPMAPWAH--------LSRGDARQPQRWGWTPPPRVSVRRTMRQ---GSWREIPSCVTRQGPGGKLWSKTYILGLTNRLEDIFPPSHSYTGFIKPLRQNNFHLPH-DHL---FSSVDTRTLVSAAAIPAV 311
            M++  GEE  + S SLPY+R+FSFQ+YS+    S   LRD +I+ S NGPN Y N++AA  G KQGGY + +T  G  G+ NEL+ L   + SG+F+L FRIY   VG  P PM+  A           R     PQ WGW  PP V+V+R  R+   G +  +P C  R+        K  I+       D+ PP  +      P    NF LP  D++   F++ D + L S A  P V
Sbjct:    1 MYIRRGEEIKISSSSLPYARYFSFQSYSIPDFVSSASLRDVDIIPSGNGPNCYTNLTAAMAGAKQGGYEVVVTSHGDHGHANELRALADDRASGYFILFFRIYQDRVGSLP-PMSELADDMGECFGPRGRYPTETPQEWGWACPPSVAVKRLSRRVGGGKFETLPLCGYRR--------KHGIV-----YNDVTPPVIACPSVRAPNLPFNFFLPSPDYIKQKFANKDAKYLFSCAEAPWV 227          

HSP 2 Score: 99.7525 bits (247), Expect = 1.636e-18
Identity = 73/250 (29.20%), Postives = 104/250 (41.60%), Query Frame = 0
Query:  315 DVWARVEAKLPRTPSSLYSPPFIANQSDYDVRYISFTSASRAFPLWTFETLTDKSIRQHYESRLRGPHEQWDGRFSLWIGP------VNAPPPEQARLENALIMRWGEVAR------PALLYNQLLS---------------------------------------------SSRAASGAAPPTLANVVVNECPRAAEHDNHDEEDEDGSFINEGNVCCLSEPRGMPTFCRMPEFLHLNLREYFPAVTFF 507
            ++WARV  +LPRT +SLY PPFIAN SDYDVRY+S +S  R+ P   ++TL D  I +HY  R  GP    D  F LW+GP        +  P   R E  L + WG   R      P +LY Q+LS                                             +S   SGA    LA ++   C      +  + E  +   +    +CC       P +C  P F+   +R+++P V ++
Sbjct:  301 ELWARVTGRLPRTANSLYEPPFIANFSDYDVRYVSLSSVGRSLPYRGYQTLHDADITEHY-LREFGPAWLEDRSFKLWLGPPQYSLAARSHLPGIVREEKGLFLPWGRDFRGEHIPFPGILYRQILSQGQVVGPSTAAGNAGPGNGSGCAWTGERKEGHRGPPAKSLTGVGAASATGSGAPIAGLAEIIPPTC------EKQEGEGTEPLHVLSNYLCCGP---AAPEWCHDPRFVASKMRDFYPLVEYY 540          
BLAST of EWM24273.1 vs. NCBI_GenBank
Match: gi|585102674|gb|EWM22223.1| (hypothetical protein Naga_100312g6 [Nannochloropsis gaditana])

HSP 1 Score: 93.5893 bits (231), Expect = 9.529e-17
Identity = 118/484 (24.38%), Postives = 194/484 (40.08%), Query Frame = 0
Query:   49 IFLKYTGLVLRN-PAPL---CSWRLSQSLN--VAWTDTQASHHSMVMFLNEGEEYTVESE-SLPYSRFFSFQTYSLDGKTSYGILRDAEIVSQNGPNLYANMSAAAGGEKQGGYTLYLTPDGSKGYPNELQTLKYGQK-SGFFVLIFRIYDVGDFPHPMAPWAHLSRGDARQPQR---WGWTPPPRVSVR----RTMRQGSWREIPSCVTRQGPGGKLWSKTYILGLTNRLEDIFPPSHSYTGFIKPLRQNNFHLPHDH-LFSSVDTRTLVSAAAIPAVDVGDVWARVEAKLPRTPSSLYSPPFIANQSDYDVRYISFTSASRAFPLWTFETLTDKSIRQHYESRLRGPHEQWDGRFSLWIGPVNAPPPEQAR-----LENALIMR-WGEVAR---PALLYNQLLSSSRAASGAAPPTLANVVVNECPRAAEHDNHDEEDEDGSFINEGNVCCLSEPRGMPTFCRMPEFLHLNLREYFPAVTFF 507
            +FL YT   L    A +   C+W+ S  LN  +A+ D  A +H + +   +G    +  E   P+ R+FS+Q+Y          +RD EI S  G N +A      G   +G Y +++T +G +GYPNEL T+  G   +G FVL+ R+Y                  D + P +   WG   PP V  +     + + G W  +  C     P     +  +I             S   TG+ + L   N    +    ++S D    +    +     G++ A +   LP +P  L++PPF+A+ +  + RY+S ++     P    +TL D  I   Y S+  G    W+ R S     V A     A+       +A+ +  WG+ AR   PAL+  ++LS S                    R  +  N+ +     S  N    C      G+   C    F    ++ ++P VT++
Sbjct:   24 VFLSYTSYALAGLNASIEFNCAWQASVGLNFNIAFPDGYAVYHVLFVPKLQGPMDVIRIEGDYPFVRYFSYQSYDPKSLDPVASVRDYEIKSVRGVNPFATPGTTLG--DKGKYQVHVTLNGDQGYPNELPTIASGSNATGAFVLL-RVYAY----------------DKQSPDKTDIWGAVAPPVVKYKLFNPSSGQGGLWYTLDQCT----PNNTKIASQFI-------------STIATGYSRVLATENKAGANPCPTWNSRD--QFLDGGGVQ----GNLVAVITGTLPPSPGGLWTPPFVADFTKSNARYLSLSTYDLNIPGPVLQTLFDSDIVDFY-SQYYGSEYLWNLRNSRQYKIVAAADLASAKRCGHLTRDAMFLSTWGQTARVSYPALVLREILSQSS-------------------RIGDTANNTQ-----SIHNIKQAC--ESIAGVGAKCETSSFASSVMKNFYPKVTYY 438          
BLAST of EWM24273.1 vs. NCBI_GenBank
Match: gi|585101524|gb|EWM21339.1| (hypothetical protein Naga_100075g21 [Nannochloropsis gaditana])

HSP 1 Score: 90.5077 bits (223), Expect = 1.423e-15
Identity = 86/314 (27.39%), Postives = 136/314 (43.31%), Query Frame = 0
Query:   93 EGEEYTVESESLPYSRFFSFQTYSLDGKTSYGILRDAEIVSQNGPNLYANMSAAAGGEKQGGYTLYLTPDGSKGYPNELQTLKYGQKSGFFVLIFRIYDVGDFPHPMAPWAHLSRGDARQPQRWGWTPPPRVSVRRTMRQGSWREIPSCVTR-QGPGGKL-----------WSKTYILGL-TNRLE-DIFPPSHSYTGFIKPLRQNNFHLPHDHLFSSVDTRTLVSAAAIPAVDVGDVWARVEAKLPRTPSSLYSPPFIANQSDYDVRYISFTSASRAFPLW-TFETLTDKSIRQHYESRLRGPHEQWDGRFSL 391
            E E Y +  +  PY R+FSF  Y    + S   L D +I   +G N + ++      +  G Y +Y++ DGSKGYPNE+  L+    S + +L FR+         + P A   R  + + + WG+   P V +    R G W  I  C    Q    ++           W K   +G   N  E  +F P  +      P+ +    + + +          +       +   D   R+  KLPRTP  L+    +A+ + YD RY+SFTSA  A PL+ ++ET+ D+ I  HY +   G    WD  ++L
Sbjct:  155 EEEVYRIRGK-FPYVRYFSFTVYDASLQ-SISTLHDTDIRPSSGKNPFNDIEVTE--DNMGTYEIYVSKDGSKGYPNEMAALRPDSTSPYALLAFRL-------QLLDPRAGEDR--SGKNREWGYVDMPLVEI-LNHRNGEWDIIRRCSDEFQARTEEVIENLDLTFNTWWPKNLQIGTECNATEFSLFDPEQN------PIIRRGVAVRNAN-------ENYIFWCMPKEIGKKDYIIRITGKLPRTPYGLFDDIRVADTARYDSRYVSFTSAD-AIPLYPSYETIHDRDIFNHYSTDPFG--SDWDRMYNL 438          
BLAST of EWM24273.1 vs. NCBI_GenBank
Match: gi|553192721|ref|XP_005855631.1| (hypothetical protein NGA_0673800 [Nannochloropsis gaditana CCMP526] >gi|422293420|gb|EKU20720.1| hypothetical protein NGA_0673800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 83.9593 bits (206), Expect = 2.141e-13
Identity = 104/372 (27.96%), Postives = 162/372 (43.55%), Query Frame = 0
Query:   65 CSWR---LSQSLNVAWTDTQASHHSMVMFLNEGEEYTVESESLPYS--RFFSFQTYSLDGKTSYGILRDAEIVSQNGPNLYANMSAAAGGEKQGGYTLYLTPDGSKGYPNEL----QTLKYGQ-KSGFFVLIFRIYDVGDFPHPMAPWAHLSRGDARQPQR--WGWTPPPRVSVRR------TMRQGSWREIPSC-VTRQGPGGKLWSKTYILGLTNRLEDIFPPSHSYTGFIKPLRQN---NF--HLPHDH----LFSSVDTRTLVSAAAIPAVDVGD-----VWARVEAKLPRTPSSLYSPPFIANQSDYDVRYISFTSASRAFPLWTFETLTDKSIRQHYESRLRGPHEQWDGRFSLWIGPVNAPPPEQ 403
            C+W+     +  NVA+ D QA +  +VM     +       S P    R+FS Q+ ++D       ++D EI   + P    N  A       G YT+ +TP G +G  NEL    +++   Q +S   V++ R Y   D   P  P +  +   A QP    +G+  PP V  R+         +  WR  P+C  TR      L SK +          + PP      F  P+R N   NF  +L  D     ++ ++D   L++ A   + ++ D     + ARV   LP T  +L++ P IAN  D DVRY+SF+S +      T +TL D +  + YE + +   E W+  +S     V A  PE+
Sbjct:  134 CAWQAYITGKQYNVAYPDLQAIYQVLVMLKTTEKNIFRVRGSFPQEGVRYFSLQSNNVDVGFPISTIKDYEI-EVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFY-TSDPDRP--PVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFY--------GMIPP------FAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQ-QPEGEAWNRSYSF----VAAEDPER 482          
BLAST of EWM24273.1 vs. NCBI_GenBank
Match: gi|585112738|gb|EWM30096.1| (hypothetical protein Naga_100193g4 [Nannochloropsis gaditana])

HSP 1 Score: 72.4034 bits (176), Expect = 5.693e-10
Identity = 92/325 (28.31%), Postives = 143/325 (44.00%), Query Frame = 0
Query:  108 RFFSFQTYSLDGKTSYGILRDAEIVSQNGPNLYANMSAAAGGEKQGGYTLYLTPDGSKGYPNEL----QTLKYGQ-KSGFFVLIFRIYDVGDFPHPMAPWAHLSRGDARQPQR--WGWTPPPRVSVRR------TMRQGSWREIPSC-VTRQGPGGKLWSKTYILGLTNRLEDIFPPSHSYTGFIKPLR---QNNF--HLPHDH----LFSSVDTRTLVSAAAIPAVDVGD-----VWARVEAKLPRTPSSLYSPPFIANQSDYDVRYISFTSASRAFPLWTFETLTDKSIRQHYESRLRGPHEQWDGRFSLWIGPVNAPPPEQA 404
            R+FS Q+ ++D       ++D EI   + P    N  A       G YT+ +TP G +G  NEL    +++   Q +S   V++ R Y   D   P  P +  +   A QP    +G+  PP V  R+         +  WR  P+C  TR      L SK +          + PP      F  P+R    NNF  +L  D     ++ ++D   L++ A   + ++ D     + ARV   LP T  +L++ P IAN  D DVRY+SF+S +      T +TL D +  + YE + +   E W+  +S     V A  PE+ 
Sbjct:   22 RYFSLQSNNVDVGFPISTIKDYEI-EVDDPENTRNPFAEDSDRPIGTYTINVTPRGDQGLKNELSLCPESMTDRQCRSVNAVMLMRFY-TSDPDRP--PVSSKTDPPASQPNDRLFGYATPPMVEERQFKSWTDDRSRDRWRVFPTCDQTRSTQVTSLISKHFY--------GMIPP------FAPPVRHNKNNNFVLYLGEDTATAGVYPNLDAAYLLAVAWQLSPELKDKPKKRLMARVTGTLPVTSRNLFTDPKIANYKDADVRYMSFSSIALVSGGPTMDTLDDAAFLRFYEPQ-QPEGEAWNRSYSF----VAAEDPERT 323          
BLAST of EWM24273.1 vs. NCBI_GenBank
Match: gi|553186469|ref|XP_005854425.1| (hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526] >gi|422294638|gb|EKU21938.1| hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 66.6254 bits (161), Expect = 4.929e-8
Identity = 57/190 (30.00%), Postives = 87/190 (45.79%), Query Frame = 0
Query:   49 IFLKYTGLVLRN-PAPL---CSWRLSQSLN--VAWTDTQASHHSMVMFLNEGEEYTVESE-SLPYSRFFSFQTYSLDGKTSYGILRDAEIVSQNGPNLYANMSAAAGGEKQGGYTLYLTPDGSKGYPNELQTLKYGQK-SGFFVLIFRIYDVGDFPHPMAPWAHLSRGDARQPQR---WGWTPPPRVSVR 227
            +FL YT   L    A +   C+W+ S  LN  +A+ D  A +H + +   +G    +  E   P+ R+FS+Q+Y          +RD EI S  G N +A      G   +G Y +++T +G +GYPNEL T+  G   +G FVL+ R+Y                  D + P +   WG   PP V  +
Sbjct:  170 VFLSYTSYALAGLNASIEFNCAWQASVGLNFNIAFPDGYAVYHVLFVPKLQGPMDVIRIEGDYPFVRYFSYQSYDPKSLDPVASVRDYEIKSVRGVNPFATPGTTLG--DKGKYQVHVTLNGDQGYPNELPTIASGSNATGAFVLL-RVYAY----------------DKQSPDKTDIWGAVAPPVVKYK 340          
BLAST of EWM24273.1 vs. NCBI_GenBank
Match: gi|553195208|ref|XP_005856101.1| (hypothetical protein NGA_0332100 [Nannochloropsis gaditana CCMP526] >gi|422292936|gb|EKU20237.1| hypothetical protein NGA_0332100 [Nannochloropsis gaditana CCMP526] >gi|585107747|gb|EWM25879.1| hypothetical protein Naga_100054g15 [Nannochloropsis gaditana])

HSP 1 Score: 66.6254 bits (161), Expect = 7.198e-8
Identity = 70/323 (21.67%), Postives = 126/323 (39.01%), Query Frame = 0
Query:   65 CSWRLS---QSLNVAWTDTQASHHSMVMFLNEGEEYTVESESLPYSRFFSFQTYSLDGK--TSYGILRDAEIVSQNGPNLYANMSAAAGGEKQGGYTLYLTPDGSKGYPNELQTLKYGQKSGFFVLIFRIYDVGDFPHPMAPWAHLSRGDARQPQRWGWTPPP--RVSVRRTMRQGSWREIPSCVTRQGPGGKLWSKTYI---LGLTNRLEDIFPPSHSY---TGFIKPLRQNNFHLPHDHLFSSVDTRTLVSAAAIPAVDVGDVWARVEAKLPRTPSSLYSPPFIANQSDYDVRYISFTSASRAFPLWTFETLTDKSIRQHY 374
            C+++++     +++ + D + + H   +   +   +  + E  P SR FS+ TY++  +  +   ++ D ++V+  G N +       G    G Y LY+TPDG +G+PNE++T   G  +     I  +Y V                D  +   WG  PPP  RV     +  G W  +  C     P   +  + +I   L L   + D+      +     F+       F  P ++   S   R L+   A       D+   +   LP  P+S             D RY S +  +   P     +++D+S+R  Y
Sbjct:  184 CAFQMTSGGDGVDMKFRDGKEALHIQFVPTTKATVFNFKGE-FPKSRAFSYATYAVANQQVSFVDMISDVDMVASTGSNPFTAGPGNTGAS--GSYDLYVTPDGKQGFPNEIKTFADGDVTNELSGIIIVYRV-------------IMADGIKSDGWGGVPPPALRVKAFSVLATGLWFNLAPC----NPKNDITIENFIENRLALKEGMSDVKVECDVFNMDNNFVYYDDAQYFKTPDENHIISCGNRALLPPGA-------DMITIISGTLP--PAS-------------DSRYASISLVNLYPPGRNVYSVSDQSLRNFY 464          
The following BLAST results are available for this feature:
BLAST of EWM24273.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105664|gb|EWM24273.1|0.000e+0100.00protein of unknown function DUF1214 [Nannochlorops... [more]
gi|585109295|gb|EWM27118.1|2.479e-8534.70hypothetical protein Naga_100046g25 [Nannochlorops... [more]
gi|585107756|gb|EWM25888.1|2.072e-3735.53hypothetical protein Naga_100054g2 [Nannochloropsi... [more]
gi|585107757|gb|EWM25889.1|2.496e-2937.76hypothetical protein Naga_100054g2 [Nannochloropsi... [more]
gi|585102674|gb|EWM22223.1|9.529e-1724.38hypothetical protein Naga_100312g6 [Nannochloropsi... [more]
gi|585101524|gb|EWM21339.1|1.423e-1527.39hypothetical protein Naga_100075g21 [Nannochlorops... [more]
gi|553192721|ref|XP_005855631.1|2.141e-1327.96hypothetical protein NGA_0673800 [Nannochloropsis ... [more]
gi|585112738|gb|EWM30096.1|5.693e-1028.31hypothetical protein Naga_100193g4 [Nannochloropsi... [more]
gi|553186469|ref|XP_005854425.1|4.929e-830.00hypothetical protein NGA_0235800 [Nannochloropsis ... [more]
gi|553195208|ref|XP_005856101.1|7.198e-821.67hypothetical protein NGA_0332100 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6433rna6433Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications