rna6429, rna6429 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6429
Unique Name	rna6429
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1366
Alignment location	CM002468.1:492758..495680 +

Link to JBrowse

Properties


Property Name	Value
Product	chloride channel 7
Orig transcript id	gnl\|cribi\|Naga_100020g49.5413.mrna
Orig protein id	gnl\|cribi\|Naga_100020g49.5413
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:492758..495680 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g49	gene6212	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6429	rna6429-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24280.1	cds6413	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:492758..495680+
coding sequence from alignment at CM002468.1:492758..495680+

mRNA sequence

>rna6429 ID=rna6429|Name=rna6429|organism=Nannochloropsis gaditana|type=mRNA|length=1366bp
GTCAGCGCTTTCTGCGGACCCGGGGGATCACGAGGGCTGAAGACGAACCA
TTACAGAGCGCTAATTGATCAGTGTGGGCGATCACACGCGAGAGATTGTC
GTGCGCGCGCTTCAAGCTTTAGAGGTGTGGCATTTTAACGCTTTGCAGTA
TGGCTTTGAGTAAGCCGGTAATGCCTCTCATCCTGGACTTCTCAATTCCA
AGCACAGGAATGTCCTGTTTACAGGGAAATTCATTTCTTAAATTAGCATT
GATTACGCTGGTATTATCTCTTGAGGGGTCGCCAGAGATGGTTCAGTCTT
TCCTCGTCTCAAAAGGGTGTGTTCAATCGTTGACTGTCCAAACTATGTCC
TTATCGTCGCACGAGGAAAACGGCCATAACTCTCGCAAAGTAGACAAACG
GTGGCAAAAAAAGCGACGCCGAGTAGAGCTGGGGCCTGATGGCTTGCCAG
TGCAACCTATTCACGCCCCACGCCAAATAAGAGGAGCCGGCGACGCCCGC
AAAATACATAAGTTGGGGGGCTCTCAACCTTCTCGCAGCAGAAAAGAACA
AGGGAAAGCATGGGATTTGGACACAGTTGGAACGGCGGGTGGTCCATCAC
GTCTCCGTATCATAGGAGGGTCGGCGCGAGGCAAAAGACTTGACTCCCCC
GAGGTCCATCTGCGCCCTATGATGAGCAAAGTCAGGGAGGCCCTATTCTC
GACATTATTTTCCTTCGATCTCTTCGGTAGCAGGCCTCCTCGAGTGATGG
ATTTATTTTGCGGAGCAGGTTCGGTCGGTTTAGAAGCCTTGTCTCGAGGA
GCGGGAGAAGCGGTGTTCGTCGACATGGCATCCGAGTGCTGCGAATGCGT
TGAGCGAAACTTGAAACTGTGCAACTTTGATGCGGTTAAGGGAAAAATCG
TGCGGGCCAGGGCTGAAGAAGTCTTACGGCAGCCAAAACGACTGGGTGTC
ATTGGTACATTTGACTTGATTTCGATTACACCACCATATGAGGAGGTAGT
ATATGCAGATTTGATCCGAGACGTGATGGAGAGCCCTGCTGTGGCCGAGG
ACTCTCTGATTGTGATCGAGTATCCTGTGGAATTGGGCAGTTTGCCGTTC
AATATAGGTAAAGGACGCCTTCTAGGCCTGCGGAATCGCCGCTATGGGCG
TACCGTCTTGGCGATATACGCGGTGCGACCCACGGGTAGGCGGTCTGGAG
ATCTGCGACCTGAAGAATTCGATTTCGCCCCTTCCCCCTTAATGGACGAG
GGACTCAGGAAATGCAACTTGAGCGATGGTGAAAATGACTATTGATCGAA
CGGCATTTTTCACGGATAAAGCATACGTCATCACGACGAAGGAATAAATG
TACATTTGGAAACTGA

protein sequence of rna6429

>rna6429-protein ID=rna6429-protein|Name=rna6429|organism=Nannochloropsis gaditana|type=polypeptide|length=862bp
MKHFVLNYLAFVLKTEIMRSPATPDHQDESHNFRTGKKEGLVRNVTSPTV
RLRCPSPRRKKISNKLLFKWSNRARCSEAATAFETMATPIKSPTQKNMSP
DSEVESHNFEPHHSEVWRIHERKRRQVEFIDPQSGRQRAFIRWMLTALLA
ILSEILCVVIIACTVELQALKFDTTLKIASHRKWYTSVAAFFLFLTFSLL
FAVVAGVVTLLQPAVGGSGMAEVKSYLNGVNLPHVMHFNTLYGKAVGVIF
AQASGLPLGFEGPIVSCCAILGSLFSQGKIWGLERRLSFEDFRNDKERRD
FVACATAGGVAAAFGAPIGGVFFALEEGASFMTLKLTWRCFFCAIGTALT
GYLLLSVLPPEFVNQLSFLDPFPNSGPLYEQKDLSIFAVMGVLGGLLGAA
FNQMNRRLTVFRLAHVTTPRKKMLELMSLTTLMAVLSFGLPFAGRCRSRP
QLDTTTGIYSYASTLRPFLCAGDDSYNELASLYLQSWDDSLRILFHLPMH
LQSGEPVFSTAALLCFFCPYFFMAFMTFGASVPFGLFIPSLLSGAALGRV
VGQALHPLGGFAEPGVYALVMASAVLGGMCRMTISLALILLEATGNMNLL
LPLSISLFLSRWVGNAFNESIYHMHIHLRKIPFLEPQCPQEARVSDLRVC
EIMATEPLCLHPVDQVGRIYELLAATAHHCFPLREDDCTVFGTISRDILC
SLLFLKAFSGEKSESVLRDTSAAVVTPVLPYEKVEQFFPHFPSIATICLT
ESEKFSWIDLRPYCDTAPYLVTESTAVPRAYRLFRNLGLRHLLVISRNGH
LSGILTRHDLEEEHLMASLAHSPMLLSRKVWKITKDALMRQEDGELDSYH
SHESPSVSPSMP

mRNA from alignment at CM002468.1:492758..495680+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6429 ID=rna6429|Name=rna6429|organism=Nannochloropsis gaditana|type=mRNA|length=2923bp|location=Sequence derived from alignment at CM002468.1:492758..495680+ (Nannochloropsis gaditana)
GCCATGCCGTCATCTATACCGAATACATGTGTCTCCAACATTCGTTGAAT
GGGAAGGTGGTAAAACGCTTTCTTACTTTGGGCTTGTACCTAGGACTTGA
AACTTTTCCCAAGAAGGATGGTACGTTGCGTTCGTCCGGCCCATCTTCTC
AGATAGGGCAAGGAAATGCGTGATATCCCAGAACGTGGACGCTAACGGAC
TGATTTCAGCAGCGTTATGAAGCACTTTGTTTTGAACTATTTGGCCTTTG
TCTTAAAAACAGAAATCATGAGAAGCCCTGCAACCCCTGATCACCAAGAC
GAGTCGCACAATTTTCGGAccggaaaaaaggagggattgGTGAGAAACGT
GACAAGCCCTACTGTACGTCTTCGCTGCCCGTCTCctcgaaggaaaaaaa
tatcgAACAAGCTACTATTTAAGTGGAGTAATCGAGCACGGTGCAGCGAG
GCCGCCACAGCGTTTGAGACTATGGCCACTCCCATTAAAAGTCCAACACA
AAAAAATATGAGCCCCGATTCTGAAGTGGAGAGTCACAACTTTGAACCAC
ATCACAGTGAGGTATGGAGAATACATGAGCGGAAACGGAGGCAGGTTGAA
TTTATCGACCCGCAGAGCGGCCGACAACGTGCCTTCATTCGATGGATGCT
TACCGCCCTTTTGGCAATTTTAAGCGAGATTTTGTGCGTCGTAATCATTG
CATGCACCGTCGAGTTGCAGGCTCTAAAATTTGACACAACGCTCAAAATC
GCATCTCATCGCAAGTGGTATACCAGCGTGGcagctttctttctttttct
tacATTTTCTCTGCTATTTGCGGTGGTTGCTGGGGTCGTGACGCTTTTGC
AGCCAGCTGTAGGAGGTTCAGGGATGGCAGAGGTAAAGAGTTACTTAAAT
GGCGTGAATCTTCCTCACGTAATGCACTTCAACACTTTATATGGCAAGGC
TGTTGGGGTAATATTTGCGCAAGCTTCAGGATTGCCTTTGGGATTCGAAG
GTCCCATTGTCTCTTGTTGCGCGATTTTAGGTTCTTTGTTTTCGCAAGGC
AAAATTTGGGGCCTTGAGCGTCGACTTTCTTTTGAAGATTTCCGTAACGA
TAAGGAACGAAGAGATTTTGTCGCGTGCGCAACAGCGGGGGGTGTTGCTG
CGGCGTTTGGAGCACCGATTGGAGGTGTATTTTTCGCATTGGAAGAAGGC
GCATCCTTCATGACACTGAAATTGACATGGCGATGCTTCTTCTGTGCAAT
AGGAACTGCGCTAACTGGATATCTTCTACTTAGCGTCTTGCCTCCAGAAT
TTGTGAATCAGCTATCGTTTCTGGATCCGTTTCCTAATTCAGGCCCATTA
TACGAGCAAAAAGATTTGTCGATTTTTGCGGTCATGGGAGTACTAGGAGG
ACTCCTAGGGGCTGCTTTCAATCAAATGAATCGGCGCCTGACTGTCTTTC
GCTTGGCTCATGTTACCACACCTCGTAAGAAAATGCTGGAGCTCATGAGC
CTGACGACTTTGATGGCTGTTCTGTCTTTCGGCCTCCCGTTTGCCGGCCG
GTGCCGCTCGCGTCCCCAGCTCGACACAACTACTGGAATTTATAGTTACG
CCAGTACCTTGCGACCATTTTTGTGTGCGGGAGATGACAGCTACAACGAA
CTCGCTTCCTTATATTTACAGTCGTGGGACGACTCGCTTCGAATACTTTT
TCACCTACCGATGCATCTTCAAAGTGGGGAGCCGGTTTTCTCGACTGCGG
CATTATTGTGTTTCTTCTGTCCATACTTTTTCATGGCATTCATGACTTTT
GGAGCTTCCGTGCCCTTTGGCCTTTTCATTCCCTCTTTATTGTCAGGAGC
TGCATTGGGACGCGTCGTTGGTCAAGCCCTTCATCCTTTGGGAGGTTTTG
CTGAACCAGGTGTTTACGCATTGGTGATGGCTTCTGCTGTGTTAGGTGGT
ATGTGTCGCATGACTATTTCGCTGGCTTTGATTCTGTTAGAGGCGACAGG
AAATATGAATTTGCTTCTTCCGCTCAGCATAAGCCTATTTTTGTCAAGAT
GGGTCGGAAATGCATTCAACGAAAGTATCTACCATATGCATATCCACCTC
CGTAAAATTCCATTTTTGGAGCCCCAATGTCCACAAGAAGCCCGTGTTAG
TGATCTGCGGGTGTGTGAGATCATGGCAACAGAGCCTTTGTGCTTGCATC
CTGTTGACCAAGTTGGGAGGATTTACGAGCTGCTCGCCGCAACTGCGCAT
CACTGCTTTCCACTTCGTGAAGATGATTGTACAGTATTTGGAACTATTTC
TCGTGACATACTTTGTTCACTTCTATTTTTGAAAGCCTTCAGCGGTGAAA
AATCAGAATCTGTATTGCGCGATACGAGTGCTGCCGTGGTTACACCTGTC
TTGCCCTACGAAAAGGTAGAACAGTTCTTCCCCCATTTTCCAAGCATTGC
TACCATATGTTTGACGGAAAGCGAAAAATTTTCATGGATCGATCTGCGAC
CATACTGCGACACAGCACCATACCTCGTGACTGAGTCCACCGCCGTCCCC
CGCGCCTATCGTCTTTTTCGCAATTTAGGATTACGACATTTATTGGTAAT
AAGTCGGAATGGGCATCTATCCGGCATCCTGACGCGACACGatttggaag
aagaacaTCTCATGGCGAGTTTGGCTCACAGTCCGATGCTTCTGAGTCGC
AAGGTGTGGAAAATCACCAAGGATGCACTGATGCGGCAAGAAGACGGTGA
ATTAGATTCATATCATTCGCATGAAAGCCCTTCTGTATCGCCTTCAATGC
CATAAGAATCGGAAATCTAATTAAAGAAATTAGACAAGTATGTGACGATT
GTATTGACTGTGATCTATCGTGAACGGCTGGTGGAAAACATGCGTCGAGT
ATACTATATGGCCATTCCTGTCC

Coding sequence (CDS) from alignment at CM002468.1:492758..495680+

>rna6429 ID=rna6429|Name=rna6429|organism=Nannochloropsis gaditana|type=CDS|length=2589bp|location=Sequence derived from alignment at CM002468.1:492758..495680+ (Nannochloropsis gaditana)
ATGAAGCACTTTGTTTTGAACTATTTGGCCTTTGTCTTAAAAACAGAAAT
CATGAGAAGCCCTGCAACCCCTGATCACCAAGACGAGTCGCACAATTTTC
GGAccggaaaaaaggagggattgGTGAGAAACGTGACAAGCCCTACTGTA
CGTCTTCGCTGCCCGTCTCctcgaaggaaaaaaatatcgAACAAGCTACT
ATTTAAGTGGAGTAATCGAGCACGGTGCAGCGAGGCCGCCACAGCGTTTG
AGACTATGGCCACTCCCATTAAAAGTCCAACACAAAAAAATATGAGCCCC
GATTCTGAAGTGGAGAGTCACAACTTTGAACCACATCACAGTGAGGTATG
GAGAATACATGAGCGGAAACGGAGGCAGGTTGAATTTATCGACCCGCAGA
GCGGCCGACAACGTGCCTTCATTCGATGGATGCTTACCGCCCTTTTGGCA
ATTTTAAGCGAGATTTTGTGCGTCGTAATCATTGCATGCACCGTCGAGTT
GCAGGCTCTAAAATTTGACACAACGCTCAAAATCGCATCTCATCGCAAGT
GGTATACCAGCGTGGcagctttctttctttttcttacATTTTCTCTGCTA
TTTGCGGTGGTTGCTGGGGTCGTGACGCTTTTGCAGCCAGCTGTAGGAGG
TTCAGGGATGGCAGAGGTAAAGAGTTACTTAAATGGCGTGAATCTTCCTC
ACGTAATGCACTTCAACACTTTATATGGCAAGGCTGTTGGGGTAATATTT
GCGCAAGCTTCAGGATTGCCTTTGGGATTCGAAGGTCCCATTGTCTCTTG
TTGCGCGATTTTAGGTTCTTTGTTTTCGCAAGGCAAAATTTGGGGCCTTG
AGCGTCGACTTTCTTTTGAAGATTTCCGTAACGATAAGGAACGAAGAGAT
TTTGTCGCGTGCGCAACAGCGGGGGGTGTTGCTGCGGCGTTTGGAGCACC
GATTGGAGGTGTATTTTTCGCATTGGAAGAAGGCGCATCCTTCATGACAC
TGAAATTGACATGGCGATGCTTCTTCTGTGCAATAGGAACTGCGCTAACT
GGATATCTTCTACTTAGCGTCTTGCCTCCAGAATTTGTGAATCAGCTATC
GTTTCTGGATCCGTTTCCTAATTCAGGCCCATTATACGAGCAAAAAGATT
TGTCGATTTTTGCGGTCATGGGAGTACTAGGAGGACTCCTAGGGGCTGCT
TTCAATCAAATGAATCGGCGCCTGACTGTCTTTCGCTTGGCTCATGTTAC
CACACCTCGTAAGAAAATGCTGGAGCTCATGAGCCTGACGACTTTGATGG
CTGTTCTGTCTTTCGGCCTCCCGTTTGCCGGCCGGTGCCGCTCGCGTCCC
CAGCTCGACACAACTACTGGAATTTATAGTTACGCCAGTACCTTGCGACC
ATTTTTGTGTGCGGGAGATGACAGCTACAACGAACTCGCTTCCTTATATT
TACAGTCGTGGGACGACTCGCTTCGAATACTTTTTCACCTACCGATGCAT
CTTCAAAGTGGGGAGCCGGTTTTCTCGACTGCGGCATTATTGTGTTTCTT
CTGTCCATACTTTTTCATGGCATTCATGACTTTTGGAGCTTCCGTGCCCT
TTGGCCTTTTCATTCCCTCTTTATTGTCAGGAGCTGCATTGGGACGCGTC
GTTGGTCAAGCCCTTCATCCTTTGGGAGGTTTTGCTGAACCAGGTGTTTA
CGCATTGGTGATGGCTTCTGCTGTGTTAGGTGGTATGTGTCGCATGACTA
TTTCGCTGGCTTTGATTCTGTTAGAGGCGACAGGAAATATGAATTTGCTT
CTTCCGCTCAGCATAAGCCTATTTTTGTCAAGATGGGTCGGAAATGCATT
CAACGAAAGTATCTACCATATGCATATCCACCTCCGTAAAATTCCATTTT
TGGAGCCCCAATGTCCACAAGAAGCCCGTGTTAGTGATCTGCGGGTGTGT
GAGATCATGGCAACAGAGCCTTTGTGCTTGCATCCTGTTGACCAAGTTGG
GAGGATTTACGAGCTGCTCGCCGCAACTGCGCATCACTGCTTTCCACTTC
GTGAAGATGATTGTACAGTATTTGGAACTATTTCTCGTGACATACTTTGT
TCACTTCTATTTTTGAAAGCCTTCAGCGGTGAAAAATCAGAATCTGTATT
GCGCGATACGAGTGCTGCCGTGGTTACACCTGTCTTGCCCTACGAAAAGG
TAGAACAGTTCTTCCCCCATTTTCCAAGCATTGCTACCATATGTTTGACG
GAAAGCGAAAAATTTTCATGGATCGATCTGCGACCATACTGCGACACAGC
ACCATACCTCGTGACTGAGTCCACCGCCGTCCCCCGCGCCTATCGTCTTT
TTCGCAATTTAGGATTACGACATTTATTGGTAATAAGTCGGAATGGGCAT
CTATCCGGCATCCTGACGCGACACGatttggaagaagaacaTCTCATGGC
GAGTTTGGCTCACAGTCCGATGCTTCTGAGTCGCAAGGTGTGGAAAATCA
CCAAGGATGCACTGATGCGGCAAGAAGACGGTGAATTAGATTCATATCAT
TCGCATGAAAGCCCTTCTGTATCGCCTTCAATGCCATAA

Synonyms

Publications