rna6428, rna6428 (mRNA) Nannochloropsis gaditana

Overview
Namerna6428
Unique Namerna6428
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1770
Alignment locationCM002468.1:491266..492631 -

Link to JBrowse

Properties
Property NameValue
Productn6-adenine-specific
Orig transcript idgnl|cribi|Naga_100020g50.5378.mrna
Orig protein idgnl|cribi|Naga_100020g50.5378
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:491266..492631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100020g50gene6211Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24245.1cds6412Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6428rna6428-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6428 ID=rna6428|Name=rna6428|organism=Nannochloropsis gaditana|type=mRNA|length=1770bp
ATGGACAAGGATCTCAGGTTAGAGCCTTATGCGGGCGAGGGACGATGGTC
GGGCATCAAGCGCACGCGGGTTGGGTGCGAGGCCAAATTCCATCAAGACT
CGAAGTACAGAGGTTACAGGCCGGACTTTGCAGCACTAGCTCGCCTGTAT
CCCGACACCTTTGGACACCTAGTCATTTACCTGAATGACGACAAAAGTGA
AGCGCTTATTGACTGGAAAGATCCAATTTCAACGAGAGCTTTAACAAAAA
CACTTCTTCGCCATGATTTTGGTCTCGAGTGGGATATTCCGCTTGAGCGA
CTATGTCCACCGGTTCCAAACCGTCTGAATTACGTCTGCTGGGTGAAGGA
TCTCCTCTCCTTGGGTGGCTCCGATACATCTCAATCAAGAACTGGTATTC
GAGGTTTAGATGTGGGTACTGGTGCCTCCGCAATATACCCGCTGCTTGGG
TGCAAGCTTCATGATTGGTCGTTTCTGGGAACGGATATTGACCCGGAGGC
TTTAGAAGCAGCCTCGGCAAATGTTCGCGAAAACCATATGGAAGATCGCA
TCTCCCTACAGCTTGTATCGCGCGTGGATTACAGCGAGCTATCTTCATTC
TCTTTCACAGCTCTCCAAACAGGAGCTGGGAGTGTCCGCGGACCCATCCA
AACTGCCCTAGACGCCGCTGGAATGGGATCCGAATACGAGCTGGACTTCG
TCATGTGTAATCCGCCTTTTTTTGCATCTTTGGATGAAATTCATTCGGGT
TTTTCGCTTAAAAGTGGGAGGAAAACAAGCAAGAGAATTTCCACAGATCC
GCATGGCTGCGCGGACGAGATGATCACCCCTGGTGGGGAACTTGCCTTTG
TGACGGCAATGATACTTGATAGTCTGGCACTTCGGGATAGAGTACGCTGG
TATAGTAGTATGGTAGGTAAAAAGCTATCTTTGAAAAAGCTATTGGGTTT
GCTCAGAGAAGCAGGAGTGCAAAATGTCCGCACCACGCAGTTTGCTCAGG
GTCGCACCACTCGTTGGGGCATCGCTTGGAGCTTCTCTCAGGCAGGACTG
GCGGAAGTGAAAGGGGCTGGGGCTAGCGCTCACAAAGTGTTCGGGAAAAG
AAAGATGGTCAAGAAGCGGGAGACGTCTTTCTCATTCTCTGTGCGCTTTA
ATCCTCCGTTACAAACCGCGGACGTGGAAGAAGGGTCGTCAGAGGAGGCA
GTAGTGCTGGACCGGGTGCTCGAATACTTCAGTATTACCCGCAACTTATG
CGTGCTGCGCGTTGGCATCACTTGTGGCGCGGCCGAAGACTTATTCCGTA
AAATGATTGTGGTTGAATTGAGTTCACATGGCACGCCGACGAAAGCCCCC
CCTGTTGTTGTCTCGGCCTTCGCTGCGCCTCCTGTCCCTCCTTCGGATCC
AGGCTGGAAGATGCGCTGCGTGGTTCTGATCACCGTCTTAGCTGGGGCTA
GTCATGAAGACTCAAATGATGAAGCATTGACGACCGCGGACCTAGGGCGT
GAGCCGCAGCCGCTCGTGTCTGAGGAAATGAACGTTGACGACATAGAGAA
TGGCGAGAGGGGGAGAGAAGGGGAGTGCAGTGTGGAAGTGAACATTGAGA
TGACCTCGGGTGGTGACCGCCCAGCGTTTTGGAAGCTCTGTAATTTGCTT
CCGGGGGAAGTTTCACGGACTAATCGGAAATGGCGGCGCAAGACTATCTT
TCAAGAAAAAAAGAATGAAGCCGCGTCGAATCCACAAATTGGTGATGCCA
AAAAACTGGGTAGGAATTAA
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protein sequence of rna6428

>rna6428-protein ID=rna6428-protein|Name=rna6428|organism=Nannochloropsis gaditana|type=polypeptide|length=381bp
MALSKPVMPLILDFSIPSTGMSCLQGNSFLKLALITLVLSLEGSPEMVQS
FLVSKGCVQSLTVQTMSLSSHEENGHNSRKVDKRWQKKRRRVELGPDGLP
VQPIHAPRQIRGAGDARKIHKLGGSQPSRSRKEQGKAWDLDTVGTAGGPS
RLRIIGGSARGKRLDSPEVHLRPMMSKVREALFSTLFSFDLFGSRPPRVM
DLFCGAGSVGLEALSRGAGEAVFVDMASECCECVERNLKLCNFDAVKGKI
VRARAEEVLRQPKRLGVIGTFDLISITPPYEEVVYADLIRDVMESPAVAE
DSLIVIEYPVELGSLPFNIGKGRLLGLRNRRYGRTVLAIYAVRPTGRRSG
DLRPEEFDFAPSPLMDEGLRKCNLSDGENDY
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mRNA from alignment at CM002468.1:491266..492631-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6428 ID=rna6428|Name=rna6428|organism=Nannochloropsis gaditana|type=mRNA|length=1366bp|location=Sequence derived from alignment at CM002468.1:491266..492631- (Nannochloropsis gaditana)
GTCAGCGCTTTCTGCGGACCCGGGGGATCACGAGGGCTGAAGACGAACCA
TTACAGAGCGCTAATTGATCAGTGTGGGCGATCACACGCGAGAGATTGTC
GTGCGCGCGCTTCAAGCTTTAGAGGTGTGGCATTTTAACGCTTTGCAGTA
TGGCTTTGAGTAAGCCGGTAATGCCTCTCATCCTGGACTTCTCAATTCCA
AGCACAGGAATGTCCTGTTTACAGGGAAATTCATTTCTTAAATTAGCATT
GATTACGCTGGTATTATCTCTTGAGGGGTCGCCAGAGATGGTTCAGTCTT
TCCTCGTCTCAAAAGGGTGTGTTCAATCGTTGACTGTCCAAACTATGTCC
TTATCGTCGCACGAGGAAAACGGCCATAACTCTCGCAAAGTAGACAAACG
GTGGCAAAAAAAGCGACGCCGAGTAGAGCTGGGGCCTGATGGCTTGCCAG
TGCAACCTATTCACGCCCCACGCCAAATAAGAGGAGCCGGCGACGCCCGC
AAAATACATAAGTTGGGGGGCTCTCAACCTTCTCGCAGCAGAAAAGAACA
AGGGAAAGCATGGGATTTGGACACAGTTGGAACGGCGGGTGGTCCATCAC
GTCTCCGTATCATAGGAGGGTCGGCGCGAGGCAAAAGACTTGACTCCCCC
GAGGTCCATCTGCGCCCTATGATGAGCAAAGTCAGGGAGGCCCTATTCTC
GACATTATTTTCCTTCGATCTCTTCGGTAGCAGGCCTCCTCGAGTGATGG
ATTTATTTTGCGGAGCAGGTTCGGTCGGTTTAGAAGCCTTGTCTCGAGGA
GCGGGAGAAGCGGTGTTCGTCGACATGGCATCCGAGTGCTGCGAATGCGT
TGAGCGAAACTTGAAACTGTGCAACTTTGATGCGGTTAAGGGAAAAATCG
TGCGGGCCAGGGCTGAAGAAGTCTTACGGCAGCCAAAACGACTGGGTGTC
ATTGGTACATTTGACTTGATTTCGATTACACCACCATATGAGGAGGTAGT
ATATGCAGATTTGATCCGAGACGTGATGGAGAGCCCTGCTGTGGCCGAGG
ACTCTCTGATTGTGATCGAGTATCCTGTGGAATTGGGCAGTTTGCCGTTC
AATATAGGTAAAGGACGCCTTCTAGGCCTGCGGAATCGCCGCTATGGGCG
TACCGTCTTGGCGATATACGCGGTGCGACCCACGGGTAGGCGGTCTGGAG
ATCTGCGACCTGAAGAATTCGATTTCGCCCCTTCCCCCTTAATGGACGAG
GGACTCAGGAAATGCAACTTGAGCGATGGTGAAAATGACTATTGATCGAA
CGGCATTTTTCACGGATAAAGCATACGTCATCACGACGAAGGAATAAATG
TACATTTGGAAACTGA
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Coding sequence (CDS) from alignment at CM002468.1:491266..492631-

>rna6428 ID=rna6428|Name=rna6428|organism=Nannochloropsis gaditana|type=CDS|length=1146bp|location=Sequence derived from alignment at CM002468.1:491266..492631- (Nannochloropsis gaditana)
ATGGCTTTGAGTAAGCCGGTAATGCCTCTCATCCTGGACTTCTCAATTCC
AAGCACAGGAATGTCCTGTTTACAGGGAAATTCATTTCTTAAATTAGCAT
TGATTACGCTGGTATTATCTCTTGAGGGGTCGCCAGAGATGGTTCAGTCT
TTCCTCGTCTCAAAAGGGTGTGTTCAATCGTTGACTGTCCAAACTATGTC
CTTATCGTCGCACGAGGAAAACGGCCATAACTCTCGCAAAGTAGACAAAC
GGTGGCAAAAAAAGCGACGCCGAGTAGAGCTGGGGCCTGATGGCTTGCCA
GTGCAACCTATTCACGCCCCACGCCAAATAAGAGGAGCCGGCGACGCCCG
CAAAATACATAAGTTGGGGGGCTCTCAACCTTCTCGCAGCAGAAAAGAAC
AAGGGAAAGCATGGGATTTGGACACAGTTGGAACGGCGGGTGGTCCATCA
CGTCTCCGTATCATAGGAGGGTCGGCGCGAGGCAAAAGACTTGACTCCCC
CGAGGTCCATCTGCGCCCTATGATGAGCAAAGTCAGGGAGGCCCTATTCT
CGACATTATTTTCCTTCGATCTCTTCGGTAGCAGGCCTCCTCGAGTGATG
GATTTATTTTGCGGAGCAGGTTCGGTCGGTTTAGAAGCCTTGTCTCGAGG
AGCGGGAGAAGCGGTGTTCGTCGACATGGCATCCGAGTGCTGCGAATGCG
TTGAGCGAAACTTGAAACTGTGCAACTTTGATGCGGTTAAGGGAAAAATC
GTGCGGGCCAGGGCTGAAGAAGTCTTACGGCAGCCAAAACGACTGGGTGT
CATTGGTACATTTGACTTGATTTCGATTACACCACCATATGAGGAGGTAG
TATATGCAGATTTGATCCGAGACGTGATGGAGAGCCCTGCTGTGGCCGAG
GACTCTCTGATTGTGATCGAGTATCCTGTGGAATTGGGCAGTTTGCCGTT
CAATATAGGTAAAGGACGCCTTCTAGGCCTGCGGAATCGCCGCTATGGGC
GTACCGTCTTGGCGATATACGCGGTGCGACCCACGGGTAGGCGGTCTGGA
GATCTGCGACCTGAAGAATTCGATTTCGCCCCTTCCCCCTTAATGGACGA
GGGACTCAGGAAATGCAACTTGAGCGATGGTGAAAATGACTATTGA
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Synonyms
Publications