rna6424, rna6424 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6424
Unique Name	rna6424
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2443
Alignment location	CM002468.1:481395..483823 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100020g57.5394.mrna
Orig protein id	gnl\|cribi\|Naga_100020g57.5394
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:481395..483823 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g57	gene6207	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6424	rna6424-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24261.1	cds6408	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:481395..483823+
coding sequence from alignment at CM002468.1:481395..483823+

mRNA sequence

>rna6424 ID=rna6424|Name=rna6424|organism=Nannochloropsis gaditana|type=mRNA|length=2443bp
TAAACAACATTGAAAGCAGGTGCACGTAAGTCTCCTTATCTTGTATATAA
GGGTAGACGTGAGTCTTCCCATACCGTAAAGGAGACAAGATGTTACCACG
AAAAAAATACTCAGTTGTTTTCATAGCACTGCTCTTCTTCCACTCGCCAC
CTGCGAACTTTTAGCCGAAGCGATCTTTGTTTAACAAAACCCAGGAGCCC
AAGGGGAGTACTGGTGATCCAATAATTGGCACCGATGAGCGCCCATATCC
TCCTTCCAAACAAGCGAGAGACATTCTTGCAAACCCCCACCTTTCATTTG
ACAAGTCACCCTAACGATTCTGTTGATAGCAAGCCATCGAAGCTCGCCAC
CACAACCATCATCATCATCATCATCATCTTTTTCTTCTTCATCATCATCT
TCATCATCATCATGTACACCCGCACCATCAAACGACATAGATGACATTCC
AAACACCCCTCCGGGCTTACATTCTGATGGAAGTCTGGATGGATCTGCTT
TACAAAGGGACGTAGAAGCCGACGAAGCATTTAAACCTGCGTGTTGCAGG
ATTTGTCATTCAGTCATTCATGTACAAAGTGGCCAGCAGTATCGCAGCTC
GCCGCTTTTCCCTCCTGATTCTATAAATTAGCTTACCGCGATGACAGTCC
CACGACATGAGGCACTTACCACGGCTCCAATTAGGATTGATAGAGGCAGA
CAGCAAAAGAAGGAGATAATTACGTACGTGGAGCCTCAAAAAATGAAAAG
TAGCCTGTAAATGTAGGTGTTGACCTGATGGCAACCAATTGATAGTGAGA
GCATAAGATTTCTTAAAAGGCTATGGCAGCCTCGAGCATATAACCTCCTT
CCATTTCCCCGGGGGCGTCAAGATCACCGTCTCTACATGCTCAGGCCGGT
CACTTGCACTGTCAGACACACCGGGCACATGCTTGTTCGCATGTTGTCCG
TCCTCCATCTCTGTACGCCAAAGCATTTCTATCTACATTTAAAACTCAGA
CACGGAGAGATTAATCCGAAGAGCAGTCCCGGATGCGTGATATGGCGAGG
CGAGCCATAAAGTTTATGATCTTATCCCTCACGTTCTCGTTTTTCTTTTA
ATTCATCCGTGCTCAATACTTGAAAGAAAGCGTCTCATCCTCGACCATGA
CTCGAGACGACTGTACTGTGTTCAGTAGCGATCCACAATCCTGGGTTGGG
CAGCACTTCTTGTCAGCTACACAGATTACTTTACCGGCATTGGAGCTACT
TCTACGTGAGGCGGAGGCTATGAAAGAGCTTGTGAAAGTTCATGGCGGCG
ATCTACGGTTGCAAGGACGCGTTTTAGGAAGTATATTCTTCGAACCCTCA
ACACGGACGACGTCATCTTTCCAAGCGGCATTTCAACGGCTTGGGGGAAG
TTGCATACACGTGAATGAGTCCAGCTCCAGCGCGCAAAAAGGAGAGACTC
TAAGTGATACCGTGAGATCCATGGCATGCTATTGCGACGTTGTGGTCTTG
CGGCATCCTGTCCAGGGAAGCGTGCGCGAGGCTGCAATGACCTGCCCAAA
ACCTCTTCTGAACGCGGGCGATGGAACAGGAGAACATCCCACGCAATCAC
TGCTGGACCTCCTCACAGTGAAGCTGGAGGTCGGAGAGATAAGAAATAAG
ACAGTTGCCTTTGTAGGAGATTTAAAACATGGACGCACTGCGCATTCTTT
TGCGCGCTTGTTGTGTTTGTTTAGTGGCATCCGGCTGATCTATGTGAGCC
CCCAATCCTTGGCGATGCCGGAAGAAGTGAAGAAATATGTAGATAGCCGT
GGGATTCAACAGCATGAGTACTTTACGCTGGATGAAGACGTGCTCGCAAC
CATGGATGTGCTCTACATGACCAGGGTACAGAAAGAACGATTCCCGAGGG
CTGCGGACTACGAGAAAGTGAAGGACATCTTTCGTGTAACGCCTCAAACC
ATGCAACTATGTAAGAGCTCGCTAGTCTTGATGCACCCTCTCCCACGCGT
TGGAGAGATTGACGACCGAGTCGACCAAGATCCACGAGCCGCTTATTTCA
GGCAAATGGAAAATGGCATGTATGCACGCATGGCTCTGATCGCTTTGATA
ATGGGTGTATCGGGTGTTTCAAACCATTGACCGACGCATCCGCGAGAAAC
AAAGGAAAGTATTGAAATTCAAAATTTTAATTAGAGAGAAAAGGCTGCAC
CATGACATGATTTCTTTCCTCTTATGGATGGAAAGTCGGGGCCGCATGTC
GGCTTGCGGTGAGAATCGAGGAAGTCATTCTCCTCCATTCCCCCCCTTGG
CCATCAGCACTTTCCAATTAGCGCATGATCACAGATGTGATCATGTGAAC
CTGCCTCGTAAACAACCATAGCGTCAAATTAATGTTGTTCGAACGATGTA
GATTTCCTTCACTCATACATTTATGTCCCTCACGAGCGGTAGG

protein sequence of rna6424

>rna6424-protein ID=rna6424-protein|Name=rna6424|organism=Nannochloropsis gaditana|type=polypeptide|length=313bp
MLRRLLRPFVKQIHPDFHQNAPTAVKRTNEQSLQQLNRILDALEAVGRGQ
LSTQSRHVVSNAFQSHYLEECYELTFHVVRPNSTIGKLKDNTFTSSPLQS
FTARLLFPSSTISHFAKTALPNASSSTKTHDKVTYFLPEEIRQQLRKLLY
GAGLTIPNELKSITAKAQGYDELRPHGLISAAAAKMMVLADLMTQDLHHE
GSTTFDSSAAVAHMLRSGRILTKGLVPAEEVLAIQVLEKVLHSILEEVQL
EEILTSIQIVLDRESDKLWWEILSSKVSGKCEYIFVCPADSRRVRHSLAF
ILRLISHRNATEA

mRNA from alignment at CM002468.1:481395..483823+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6424 ID=rna6424|Name=rna6424|organism=Nannochloropsis gaditana|type=mRNA|length=2429bp|location=Sequence derived from alignment at CM002468.1:481395..483823+ (Nannochloropsis gaditana)
GGATTAATCTCTCCGTGTCTGAGTTTTAAATGTAGATAGAAATGCTTTGG
CGTacagagatggaggacggacAACATGCGAACAAGCATGTGCCCGGTGT
GTCTGACAGTGCAAGTGACCGGCCTGAGCATGTAGAGACGGTGATCTTGA
CGCCCccggggaaatggaaggaggtTATATGCTCGAGGCTGCCATAGCCT
TTTAAGAAATCTTATGCTCTCACTATCAATTGGTTGCCATCAGGTCAACA
CCTACATTTACAGGCTACTTTTCATTTTTTGAGGCTCCACGTACGTAATT
ATCTCCTTCTTTTGCTGTCTGCCTCTATCAATCCTAATTGGAGCCGTGGT
AAGTGCCTCATGTCGTGGGACTGTCATCGCGGTAAGCTAATTTATAGAAt
caggagggaaaagcggcgAGCTGCGATACTGCTGGCCACTTTGTACATGA
ATGACTGAATGACAAATCCTGCAACACGCAGGTTTAAATGCTTCGTCGGC
TTCTACGTCCCTTTGTAAAGCAGATCCATCCAGACTTCCATCAGAATGTA
AGCCCGGAGGGGTGTTTGGAATGTCATCTATGTCGTTTGATGGTGCGGGT
GTacatgatgatgatgaagatgatgatgaagaagaaaaagatgatgatga
tgatgatgatggttGTGGTGGCGAGCTTCGATGGCTTGCTATCAACAGAA
TCGTTAGGGTGACTTGTCAAATGAAAGGTGGGGGTTTGCAAGAATGTCTC
TCGCTTGTTTGGAAGGAGGATATGGGCGCTCATCGGTGCCAATTATTGGA
TCACCAGTACTCCCCTTGGGCTCCTGGGTTTTGTTAAACAAAGATCGCTT
CGGCTAAAAGTTCGCAGGTGGCgagtggaagaagagcagtGCTATGAAAA
CAACTGAGTATTTTTTTCGTGGTAACATCTTGTCTCCTTTACGGTATGGG
AAGACTCACGTCTACCCTTATATACAAGATAAGGAGACTTACGTGCACCT
GCTTTCAATGTTGTTTACGTATAGGCCCCGACAGCTGTGAAACGTACGAA
TGAGCAGTCACTGCAGCAGCTAAATCGAATCTTAGACGCCTTGGAAGCTG
TGGGGAGAGGACAGCTCAGTACGCAGAGTAGGCATGTTGTAAGCAACGCT
TTTCAGTCACACTATCTTGAAGAATGTTACGAGCTGACATTTCACGTTGT
AAGGCCAAACAGTACAATCGGAAAACTGAAAGACAACACTTTTACTTCTT
CGCCACTGCAAAGCTTCACCGCgcgccttctttttccatcaAGTACTATT
TCGCATTTCGCTAAAACAGCTCTGCCGAACGCATCCTCATCTACGAAAAC
ACACGACAAAGTGACATACTTCTTACCGGAAGAGATACGTCAGCAGTTAC
GGAAGCTTCTCTACGGCGCTGGATTGACCATCCCGAATGAATTAAAATCG
ATTACTGCTAAAGCGCAAGGCTATGATGAATTAAGGCCTCATGGGTTGAT
AAGTGCAGCAGCCGCCAAAATGATGGTGCTTGCCGATCTGATGACACAAG
ATCTTCATCATGAAGGCTCAACCACATTTGATTCTAGCGCTGCTGTCGCT
CACATGCTACGGAGTGGAAGGATTTTGACGAAGGGTTTGGTCCCGGCAGA
AGAAGTGCTTGCCATCCAGGTTCTTGAGAAAGTTCTGCACAGTATTTTGG
AAGAGGTCCAGCTCGAAGAGATTCTGACAAGCATTCAAATTGTGCTCGAC
AGGGAATCTGATAAGCTCTGGTGGGAGATACTTTCAAGCAAAGTTTCGGG
TAAATGTGAATATATTTTTGTTTGTCCCGCAGATTCGAGAAGGGTACGAC
ACAGTCTAGCATTTATTCTTCGTTTAATCAGCCACCGAAATGCTACGGAG
GCCTGAAAACTTCTCAGAATAGGTATTGGTACCCGTATTTGAGAGTTTTT
TCAAAATTCTATGGTTTTCGTGAATCTTGCAAGTGTAGAGTATATGCTCT
GTACACACCATGAACATAAAGGATAAATAGGACGTTTGTTGTTTAGAAAG
GATGTAAAGTATAATTACGTGTATAACAAATATTCCAAGACATGCAATCT
AAGTACTCTTCGGCATGGATTCATCGAACTTATTTTTATTACACTTCAAC
GACTCGTGCGCTTCGTATATCGTTGACATGCCCTTGCCATGTGGTGTAAA
GGTCATTCGAAGGCCAAACTTTATGTCGGTGATAGTACGCAAGCTAGTGA
CGAAAGCTCGAGCCATTTTGCAAGATGTATGACAATGATTTGAATAGCTC
CAGGGTCTGTCCTGATTATCAACATCTGCAATAATAAATATTCTTAATCA
GCTAGAAAAGTGATGCTTTTTACTTTCCAGTGATCTTTTTAAGTTTCTGT
CCATCAAATCATACAATTAAAATATCATC

Coding sequence (CDS) from alignment at CM002468.1:481395..483823+

>rna6424 ID=rna6424|Name=rna6424|organism=Nannochloropsis gaditana|type=CDS|length=1884bp|location=Sequence derived from alignment at CM002468.1:481395..483823+ (Nannochloropsis gaditana)
ATGCTTCGTCGGCTTCTACGTCCCTTTGTAAAGCAGATCCATCCAGACTT
CCATCAGAATGCCCCGACAGCTGTGAAACGTACGAATGAGCAGTCACTGC
AGCAGCTAAATCGAATCTTAGACGCCTTGGAAGCTGTGGGGAGAGGACAG
CTCAGTACGCAGAGTAGGCATGTTGTAAGCAACGCTTTTCAGTCACACTA
TCTTGAAGAATGTTACGAGCTGACATTTCACGTTGTAAGGCCAAACAGTA
CAATCGGAAAACTGAAAGACAACACTTTTACTTCTTCGCCACTGCAAAGC
TTCACCGCgcgccttctttttccatcaAGTACTATTTCGCATTTCGCTAA
AACAGCTCTGCCGAACGCATCCTCATCTACGAAAACACACGACAAAGTGA
CATACTTCTTACCGGAAGAGATACGTCAGCAGTTACGGAAGCTTCTCTAC
GGCGCTGGATTGACCATCCCGAATGAATTAAAATCGATTACTGCTAAAGC
GCAAGGCTATGATGAATTAAGGCCTCATGGGTTGATAAGTGCAGCAGCCG
CCAAAATGATGGTGCTTGCCGATCTGATGACACAAGATCTTCATCATGAA
GGCTCAACCACATTTGATTCTAGCGCTGCTGTCGCTCACATGCTACGGAG
TGGAAGGATTTTGACGAAGGGTTTGGTCCCGGCAGAAGAAGTGCTTGCCA
TCCAGGTTCTTGAGAAAGTTCTGCACAGTATTTTGGAAGAGGTCCAGCTC
GAAGAGATTCTGACAAGCATTCAAATTGTGCTCGACAGGGAATCTGATAA
GCTCTGGTGGGAGATACTTTCAAGCAAAGTTTCGGGTAAATGTGAATATA
TTTTTGTTTGTCCCGCAGATTCGAGAAGGGTACGACACAGTCTAGCATTT
ATTCTTCGTTTAATCAGCCACCGAAATGCTACGGAGGCCTGAATGCTTCG
TCGGCTTCTACGTCCCTTTGTAAAGCAGATCCATCCAGACTTCCATCAGA
ATGCCCCGACAGCTGTGAAACGTACGAATGAGCAGTCACTGCAGCAGCTA
AATCGAATCTTAGACGCCTTGGAAGCTGTGGGGAGAGGACAGCTCAGTAC
GCAGAGTAGGCATGTTGTAAGCAACGCTTTTCAGTCACACTATCTTGAAG
AATGTTACGAGCTGACATTTCACGTTGTAAGGCCAAACAGTACAATCGGA
AAACTGAAAGACAACACTTTTACTTCTTCGCCACTGCAAAGCTTCACCGC
gcgccttctttttccatcaAGTACTATTTCGCATTTCGCTAAAACAGCTC
TGCCGAACGCATCCTCATCTACGAAAACACACGACAAAGTGACATACTTC
TTACCGGAAGAGATACGTCAGCAGTTACGGAAGCTTCTCTACGGCGCTGG
ATTGACCATCCCGAATGAATTAAAATCGATTACTGCTAAAGCGCAAGGCT
ATGATGAATTAAGGCCTCATGGGTTGATAAGTGCAGCAGCCGCCAAAATG
ATGGTGCTTGCCGATCTGATGACACAAGATCTTCATCATGAAGGCTCAAC
CACATTTGATTCTAGCGCTGCTGTCGCTCACATGCTACGGAGTGGAAGGA
TTTTGACGAAGGGTTTGGTCCCGGCAGAAGAAGTGCTTGCCATCCAGGTT
CTTGAGAAAGTTCTGCACAGTATTTTGGAAGAGGTCCAGCTCGAAGAGAT
TCTGACAAGCATTCAAATTGTGCTCGACAGGGAATCTGATAAGCTCTGGT
GGGAGATACTTTCAAGCAAAGTTTCGGGTAAATGTGAATATATTTTTGTT
TGTCCCGCAGATTCGAGAAGGGTACGACACAGTCTAGCATTTATTCTTCG
TTTAATCAGCCACCGAAATGCTACGGAGGCCTGA

Synonyms

Publications