EWM24261.1, cds6408 (CDS) Nannochloropsis gaditana

Overview
NameEWM24261.1
Unique Namecds6408
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:481882..481941 +
Alignment locationCM002468.1:482419..483300 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24261.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100020g57.5394.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:481882..481941 +
CM002468.1supercontigCM002468.1:482419..483300 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR028031DUF4460
Homology
[Close]
BLAST of EWM24261.1 vs. NCBI_GenBank
Match: gi|585105652|gb|EWM24261.1| (hypothetical protein Naga_100020g57 [Nannochloropsis gaditana])

HSP 1 Score: 644.425 bits (1661), Expect = 0.000e+0
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0 
Query:    1 MLRRLLRPFVKQIHPDFHQNAPTAVKRTNEQSLQQLNRILDALEAVGRGQLSTQSRHVVSNAFQSHYLEECYELTFHVVRPNSTIGKLKDNTFTSSPLQSFTARLLFPSSTISHFAKTALPNASSSTKTHDKVTYFLPEEIRQQLRKLLYGAGLTIPNELKSITAKAQGYDELRPHGLISAAAAKMMVLADLMTQDLHHEGSTTFDSSAAVAHMLRSGRILTKGLVPAEEVLAIQVLEKVLHSILEEVQLEEILTSIQIVLDRESDKLWWEILSSKVSGKCEYIFVCPADSRRVRHSLAFILRLISHRNATEA 313
            MLRRLLRPFVKQIHPDFHQNAPTAVKRTNEQSLQQLNRILDALEAVGRGQLSTQSRHVVSNAFQSHYLEECYELTFHVVRPNSTIGKLKDNTFTSSPLQSFTARLLFPSSTISHFAKTALPNASSSTKTHDKVTYFLPEEIRQQLRKLLYGAGLTIPNELKSITAKAQGYDELRPHGLISAAAAKMMVLADLMTQDLHHEGSTTFDSSAAVAHMLRSGRILTKGLVPAEEVLAIQVLEKVLHSILEEVQLEEILTSIQIVLDRESDKLWWEILSSKVSGKCEYIFVCPADSRRVRHSLAFILRLISHRNATEA
Sbjct:    1 MLRRLLRPFVKQIHPDFHQNAPTAVKRTNEQSLQQLNRILDALEAVGRGQLSTQSRHVVSNAFQSHYLEECYELTFHVVRPNSTIGKLKDNTFTSSPLQSFTARLLFPSSTISHFAKTALPNASSSTKTHDKVTYFLPEEIRQQLRKLLYGAGLTIPNELKSITAKAQGYDELRPHGLISAAAAKMMVLADLMTQDLHHEGSTTFDSSAAVAHMLRSGRILTKGLVPAEEVLAIQVLEKVLHSILEEVQLEEILTSIQIVLDRESDKLWWEILSSKVSGKCEYIFVCPADSRRVRHSLAFILRLISHRNATEA 313
The following BLAST results are available for this feature:
BLAST of EWM24261.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105652|gb|EWM24261.1|0.000e+0100.00hypothetical protein Naga_100020g57 [Nannochlorops... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6424rna6424Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications