rna6421, rna6421 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6421
Unique Name	rna6421
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	336
Alignment location	CM002468.1:477701..479417 -

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Properties


Property Name	Value
Product	uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_100020g60.5401.mrna
Orig protein id	gnl\|cribi\|Naga_100020g60.5401
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:477701..479417 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g60	gene6204	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6421	rna6421-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24268.1	cds6405	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:477701..479417-
coding sequence from alignment at CM002468.1:477701..479417-

mRNA sequence

>rna6421 ID=rna6421|Name=rna6421|organism=Nannochloropsis gaditana|type=mRNA|length=336bp
ATGGAAGCGCGCGCAACGGCATTGTATCTCCTTTCCATGAGAGGAAGAGC
CTCTTTTCAGAGCGTTGTGAGAAACAAAAAAATATCTATCTTTTCTAGAA
AAAAATCCGTTTCCTTTTTTTTGGATGTAATCGATTTCCGCCAGAGAAAT
AAAAATTTGCGTACAAAAATGATCAATAATTATAAAGATTACATCTTCCA
TTTTCTTCTTCACATTGCTTTGTCAGCCGAGACCCCGTTGTCGCTTATTT
TCCACTTTTTCTTCTCCCTCTCATTTTCTTTCTTTGACCTGGGTCCCGCA
CATTCGCTTGCGGGCCGTCATGACTTTCCACTGTAA

protein sequence of rna6421

>rna6421-protein ID=rna6421-protein|Name=rna6421|organism=Nannochloropsis gaditana|type=polypeptide|length=200bp
MAKRTENTAAVHLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQ
GLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKL
NETYKRQEVPLKRKKKRARGEKLPVVPIKVARPRCCCGIPSFCKAKILKS
MVQKTCKLFSASGARMVSPNLLRKLAHLDPLFGQPWPDQQLDAPQRERWV

mRNA from alignment at CM002468.1:477701..479417-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6421 ID=rna6421|Name=rna6421|organism=Nannochloropsis gaditana|type=mRNA|length=1717bp|location=Sequence derived from alignment at CM002468.1:477701..479417- (Nannochloropsis gaditana)
AGGCCTGCCCTGCCACCTGATAACAGCGCGTAGATAAAAGATAGGATCGT
ACTCACTCGAGCGACGCCATGTGTGCAGATGAGCCAACACTCCCTTGTAA
TAGCGCCAGGCCCCTATAAAAGGTCCTGTATATGATTGCTGATGGTTAAT
ATGGCCGCATACCCAGGATTTTCGGAGTTCTCTTGCCTGATGGTCGTAAG
AGCAGCCATCCATCTATCAGTGGCATCTCATAACGTGCAATATGTCCATT
GTACATATTTTGGTGACTGGTGTGCATTTTTCGTGGATATGTGCGGAGAA
ATCAGCGCATAGGGCACGCTTTAGGCTCCAGTGCTTGACTATAATCTCAA
ACTAATCGTCATGTAACACATGTGACTCGGAATTCTGAACACGGGACGAT
GGCTGACCTGTAGCAGGAAATATTTAGGTGTGTAGGTGCCACACTTCATG
CTTCTTGCATCACATCATGGCCATCACGCACTCGTTCTCCGTGGGTCACG
CATGGCTTCTCAATTTTCCGATCACTCGCCATCGTAACGTTGCACCTCAC
GATAAAAAATTGACATACGCACATGCGTATCAAAAGCGTTCGTGGCAGGA
CATTTCATTTTATCTCATGTAGATGCCCCCTCCTTTCCCCCGGTCATCAA
AGAAGAGAGCGTCTCGGTCGCCCTCGCCACATCTAACCTGAGTTTGCTTT
CGTTGGCTTCCGTCTCGTCGAGAGCTCGTGAAACTGTGCGGCGCTGAAAA
TGGCAAAAAGAACCGAGAACACCGCGGCAGTACATTTGAAGTCTCTGGTC
GGGCCAATGCAAGATACTCTAAATCAGCATTGGGTTGATGGTAAGCAGTC
TTGGATGGAGGTCGAAGAGTTTCAGCGCTTTAGACTGGTGACGGCGTATC
TAGATTGTGCTTTATGACGCTTCGCTTTTGCACATCGCTCAACTTATGCA
GGTAAAAAAAAGAACTTCGGGTTCAAAATGATGATGAAGATGGGATGGAG
TGACGGTCAAGGCCTGGGCAAGGAGCTGCAAGGCTGCGCAACGCATGTGA
CCGTGGCTAAGAAGGTAGATAGTGCTGGCCTAGGCAGCGTTCGAGATGAG
ACGGGAAATGCGGGTTGGACAGAGGCATCGGCAACATTTGACAGCGTTCT
CTCCAAGCTTAACGAAACCTACAAGCGTCAAGAAGTACCGCTCAAAAGAA
AAAAAAAAAGAGCCCGAGGAGAGAAGCTTCCGGTTGTCCCAATCAAGGTG
GCACGGCCTCGATGCTGTTGCGGCATCCCAAGCTTTTGCAAAGCAAAAAT
ATTAAAAAGTATGGTACAAAAGACATGCAAGCTATTCTCGGCGTCAGGCG
CAAGGATGGTGTCTCCAAATTTACTGAGGAAATTAGCTCATCTCGATCCT
CTGTTTGGTCAGCCTTGGCCGGATCAGCAGTTGGATGCACCACAGAGGGA
GCGTTGGGTATAGGAAGCGATTCAACGAATATAGACAAGAATCGGAGAAA
AAAGAGGAAGAGGCAGGAGGGAGTAGAAGTGAAAGAGGGCAAAGAATATG
CACCGTCAAGACTTACAGTGGAAAGTCATGACGGCCCGCAAGCGAATGTG
CGGGACCCAGGTCAAAGAAAGAAAATGAGAGGGAGAAGAAAAAGTGGAAA
ATAAGCGACAACGGGGTCTCGGCTGACAAAGCAATGTGAAGAAGAAAATG
GAAGATGTAATCTTTAT

Coding sequence (CDS) from alignment at CM002468.1:477701..479417-

>rna6421 ID=rna6421|Name=rna6421|organism=Nannochloropsis gaditana|type=CDS|length=1206bp|location=Sequence derived from alignment at CM002468.1:477701..479417- (Nannochloropsis gaditana)
GTAAAAAAAAGAACTTCGGGTTCAAAATGATGATGAAGATGGGATGGAGT
GACGGTCAAGGCCTGGGCAAGGAGCTGCAAGGCTGCGCAACGCATGTGAC
CGTGGCTAAGAAGGTAGATAGTGCTGGCCTAGGCAGCGTTCGAGATGAGA
CGGGAAATGCGGGTTGGACAGAGGCATCGGCAACATTTGACAGCGTTCTC
TCCAAGCTTAACGAAACCTACAAGCGTCAAGAAGTACCGCTCAAAAGAAA
AAAAAAAAGAGCCCGAGGAGAGAAGCTTCCGGTTGTCCCAATCAAGGTGG
CACGGCCTCGATGCTGTTGCGGCATCCCAAGCTTTTGCAAAGCAAAAATA
TTAAAAAGTATGGTACAAAAGACATGCAAGCTATTCTCGGCGTCAGGCGC
AAGGATGGTGTCTCCAAATTTACTGAGGAAATTAGCTCATCTCGATCCTC
TGTTTGGTCAGCCTTGGCCGGATCAGCAGTTGGATGCACCACAGAGGGAG
CGTTGGGTATAGATGGCAAAAAGAACCGAGAACACCGCGGCAGTACATTT
GAAGTCTCTGGTCGGGCCAATGCAAGATACTCTAAATCAGCATTGGGTTG
ATGGTAAAAAAAAGAACTTCGGGTTCAAAATGATGATGAAGATGGGATGG
AGTGACGGTCAAGGCCTGGGCAAGGAGCTGCAAGGCTGCGCAACGCATGT
GACCGTGGCTAAGAAGGTAGATAGTGCTGGCCTAGGCAGCGTTCGAGATG
AGACGGGAAATGCGGGTTGGACAGAGGCATCGGCAACATTTGACAGCGTT
CTCTCCAAGCTTAACGAAACCTACAAGCGTCAAGAAGTACCGCTCAAAAG
AAAAAAAAAAAGAGCCCGAGGAGAGAAGCTTCCGGTTGTCCCAATCAAGG
TGGCACGGCCTCGATGCTGTTGCGGCATCCCAAGCTTTTGCAAAGCAAAA
ATATTAAAAAGTATGGTACAAAAGACATGCAAGCTATTCTCGGCGTCAGG
CGCAAGGATGGTGTCTCCAAATTTACTGAGGAAATTAGCTCATCTCGATC
CTCTGTTTGGTCAGCCTTGGCCGGATCAGCAGTTGGATGCACCACAGAGG
GAGCGTTGGGTATAGATGGCAAAAAGAACCGAGAACACCGCGGCAGTACA
TTTGAAGTCTCTGGTCGGGCCAATGCAAGATACTCTAAATCAGCATTGGG
TTGATG

Synonyms

Publications