EWM24268.1, cds6405 (CDS) Nannochloropsis gaditana

Overview
NameEWM24268.1
Unique Namecds6405
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:478578..478668 -
Alignment locationCM002468.1:477955..478466 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24268.1
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100020g60.5401.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:478578..478668 -
CM002468.1supercontigCM002468.1:477955..478466 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR000467G_patch_dom
Homology
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|585105659|gb|EWM24268.1| (uncharacterized protein Naga_100020g60 [Nannochloropsis gaditana])

HSP 1 Score: 414.461 bits (1064), Expect = 1.246e-146
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query:    1 MAKRTENTAAVHLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETYKRQEVPLKRKKKRARGEKLPVVPIKVARPRCCCGIPSFCKAKILKSMVQKTCKLFSASGARMVSPNLLRKLAHLDPLFGQPWPDQQLDAPQRERWV 200
            MAKRTENTAAVHLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETYKRQEVPLKRKKKRARGEKLPVVPIKVARPRCCCGIPSFCKAKILKSMVQKTCKLFSASGARMVSPNLLRKLAHLDPLFGQPWPDQQLDAPQRERWV
Sbjct:    1 MAKRTENTAAVHLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETYKRQEVPLKRKKKRARGEKLPVVPIKVARPRCCCGIPSFCKAKILKSMVQKTCKLFSASGARMVSPNLLRKLAHLDPLFGQPWPDQQLDAPQRERWV 200          
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|698775784|ref|XP_009820936.1| (hypothetical protein H257_00105 [Aphanomyces astaci] >gi|574123061|gb|ETV88536.1| hypothetical protein H257_00105 [Aphanomyces astaci])

HSP 1 Score: 80.4925 bits (197), Expect = 3.112e-15
Identity = 40/93 (43.01%), Postives = 57/93 (61.29%), Query Frame = 0
Query:   12 HLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETY 104
            H+   +G +Q   N+ W     K FG+KM+ KMGW  GQG+GK+LQG ATHVT+ K+ D  G+G    +    GW+  S+ F  VL+ LN++Y
Sbjct:   10 HVMVKIGGLQ---NKAWASDTSK-FGYKMLEKMGWKAGQGVGKDLQGQATHVTIVKRTDGLGIGCSLKQAEVTGWSSTSSNFADVLAALNKSY 98          
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|953491783|emb|CEG45792.1| (pin2 terf1-interacting telomerase inhibitor 1 [Plasmopara halstedii])

HSP 1 Score: 79.337 bits (194), Expect = 9.032e-15
Identity = 45/107 (42.06%), Postives = 61/107 (57.01%), Query Frame = 0
Query:    4 RTENTAAVHLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETYKRQEVP 110
            RT+N     +   VG MQ   N  W     K FGFKM++KMGWS G+G+GK LQG ATHV VA++ ++ G+G    +    GW E +  F  VL+ LN +Y  +  P
Sbjct:   17 RTDNAGQTMVA--VGGMQ---NMAWASDTSK-FGFKMLVKMGWSAGKGVGKHLQGQATHVKVARRSENLGVGCSLKQAEVQGWAETAGGFADVLNALNNSYSCKTCP 117          
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|673018192|ref|XP_008863057.1| (hypothetical protein H310_01651 [Aphanomyces invadans] >gi|574482260|gb|ETW09252.1| hypothetical protein H310_01651 [Aphanomyces invadans])

HSP 1 Score: 77.7962 bits (190), Expect = 2.630e-14
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 0
Query:   12 HLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETY 104
            H+   +G +Q   N+ W     K FG+KM+ KMGW  GQG+GK+LQG ATHVT+ K+ +  G+G    +    GW+  S+ F  VL+ LN++Y
Sbjct:   10 HVMVKLGGLQ---NKAWASDTSK-FGYKMLEKMGWKAGQGVGKDLQGQATHVTIVKRTEGLGIGCSLKQAEVTGWSSTSSNFADVLAALNKSY 98          
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|301107422|ref|XP_002902793.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097911|gb|EEY55963.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 77.411 bits (189), Expect = 3.643e-14
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 0
Query:   17 VGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETY 104
            VG MQ   N  W     K FGFKM++KMGWS G+G+GKELQG ATHV +A++ ++ G+G    +    GW++ +  F  VL  LN++Y
Sbjct:   25 VGGMQ---NMAWASDTSK-FGFKMLVKMGWSAGKGVGKELQGQATHVKIARRSENLGVGCSLKQAEVQGWSQTAGGFADVLKTLNKSY 108          
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|301091254|ref|XP_002895816.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262096593|gb|EEY54645.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 77.411 bits (189), Expect = 3.643e-14
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 0
Query:   17 VGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETY 104
            VG MQ   N  W     K FGFKM++KMGWS G+G+GKELQG ATHV +A++ ++ G+G    +    GW++ +  F  VL  LN++Y
Sbjct:   25 VGGMQ---NMAWASDTSK-FGFKMLVKMGWSAGKGVGKELQGQATHVKIARRSENLGVGCSLKQAEVQGWSQTAGGFADVLKTLNKSY 108          
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|1173942780|gb|OQR91726.1| (hypothetical protein ACHHYP_04449 [Achlya hypogyna])

HSP 1 Score: 77.411 bits (189), Expect = 4.137e-14
Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 0
Query:   12 HLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKL 100
            H+   VG +Q   N+ W     K FG+KM+MKMGW  G G+GK+LQG ATHVT+ K+ D+ GLG    +    GW+  S  F  VLS L
Sbjct:   10 HVMVQVGGLQ---NKAWAADTNK-FGYKMLMKMGWKAGSGVGKDLQGTATHVTIQKRSDNLGLGCSLKQAEVTGWSSTSGNFADVLSTL 94          
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|813118830|ref|XP_012196075.1| (hypothetical protein SPRG_02134 [Saprolegnia parasitica CBS 223.65] >gi|641539517|gb|KDO33326.1| hypothetical protein SPRG_02134 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 76.6406 bits (187), Expect = 5.617e-14
Identity = 50/125 (40.00%), Postives = 70/125 (56.00%), Query Frame = 0
Query:    1 MAKRTENTAAVHLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNE----TYKRQEVPLKR-KKKRARG 120
            MA + E +  V     VG +Q   N+ W     K FG++M+MKMGW  G+G+GK+LQG ATHVT+ K+ +S GLG    ++   GW+  S  F  VLS L +    T  R+ +  KR + K A G
Sbjct:    1 MATKVEESIMVQ----VGGLQ---NKAWAADTSK-FGYQMLMKMGWKAGKGVGKDLQGTATHVTIQKRSESLGLGCSLKQSEVTGWSSTSGNFADVLSNLKKKPTTTINRRILFSKRVRNKNASG 117          
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|1173959955|gb|OQS06128.1| (RNA polymerase I-specific transcription initiation factor rrn3 [Thraustotheca clavata])

HSP 1 Score: 79.337 bits (194), Expect = 8.619e-14
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 0
Query:   17 VGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKL 100
            VG +Q   N+ W     K FG+KM+MKMGW  G G+GK+LQG +THV V K+ D+ GLG    +    GW+  S  F  VLS L
Sbjct:   14 VGGLQ---NKAWASDTSK-FGYKMLMKMGWKAGAGIGKDLQGTSTHVVVQKRSDNLGLGCSLKQAEVTGWSSTSGNFADVLSSL 93          
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|568026907|gb|ETM00878.1| (hypothetical protein L917_02456 [Phytophthora parasitica] >gi|970665541|gb|KUG02169.1| PIN2/TERF1-interacting telomerase inhibitor 1 [Phytophthora nicotianae])

HSP 1 Score: 76.2554 bits (186), Expect = 1.125e-13
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 0
Query:   17 VGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETY 104
            VG MQ   N  W     K FGFKM++KMGWS G+G+GK+LQG ATHV +A++ ++ G+G    +    GW++ +  F  VL  LN++Y
Sbjct:   25 VGGMQ---NMAWASDTSK-FGFKMLVKMGWSAGKGVGKDLQGQATHVKIARRSENLGVGCSLKQAEVQGWSQTAGGFADVLKTLNKSY 108          
The following BLAST results are available for this feature:
BLAST of EWM24268.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105659|gb|EWM24268.1|1.246e-146100.00uncharacterized protein Naga_100020g60 [Nannochlor... [more]
gi|698775784|ref|XP_009820936.1|3.112e-1543.01hypothetical protein H257_00105 [Aphanomyces astac... [more]
gi|953491783|emb|CEG45792.1|9.032e-1542.06pin2 terf1-interacting telomerase inhibitor 1 [Pla... [more]
gi|673018192|ref|XP_008863057.1|2.630e-1441.94hypothetical protein H310_01651 [Aphanomyces invad... [more]
gi|301107422|ref|XP_002902793.1|3.643e-1445.45conserved hypothetical protein [Phytophthora infes... [more]
gi|301091254|ref|XP_002895816.1|3.643e-1445.45conserved hypothetical protein [Phytophthora infes... [more]
gi|1173942780|gb|OQR91726.1|4.137e-1446.07hypothetical protein ACHHYP_04449 [Achlya hypogyna... [more]
gi|813118830|ref|XP_012196075.1|5.617e-1440.00hypothetical protein SPRG_02134 [Saprolegnia paras... [more]
gi|1173959955|gb|OQS06128.1|8.619e-1446.43RNA polymerase I-specific transcription initiation... [more]
gi|568026907|gb|ETM00878.1|1.125e-1344.32hypothetical protein L917_02456 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6421rna6421Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications