EWM24268.1, cds6405 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|585105659|gb|EWM24268.1| (uncharacterized protein Naga_100020g60 [Nannochloropsis gaditana]) HSP 1 Score: 414.461 bits (1064), Expect = 1.246e-146 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query: 1 MAKRTENTAAVHLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETYKRQEVPLKRKKKRARGEKLPVVPIKVARPRCCCGIPSFCKAKILKSMVQKTCKLFSASGARMVSPNLLRKLAHLDPLFGQPWPDQQLDAPQRERWV 200
MAKRTENTAAVHLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETYKRQEVPLKRKKKRARGEKLPVVPIKVARPRCCCGIPSFCKAKILKSMVQKTCKLFSASGARMVSPNLLRKLAHLDPLFGQPWPDQQLDAPQRERWV
Sbjct: 1 MAKRTENTAAVHLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETYKRQEVPLKRKKKRARGEKLPVVPIKVARPRCCCGIPSFCKAKILKSMVQKTCKLFSASGARMVSPNLLRKLAHLDPLFGQPWPDQQLDAPQRERWV 200
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|698775784|ref|XP_009820936.1| (hypothetical protein H257_00105 [Aphanomyces astaci] >gi|574123061|gb|ETV88536.1| hypothetical protein H257_00105 [Aphanomyces astaci]) HSP 1 Score: 80.4925 bits (197), Expect = 3.112e-15 Identity = 40/93 (43.01%), Postives = 57/93 (61.29%), Query Frame = 0
Query: 12 HLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETY 104
H+ +G +Q N+ W K FG+KM+ KMGW GQG+GK+LQG ATHVT+ K+ D G+G + GW+ S+ F VL+ LN++Y
Sbjct: 10 HVMVKIGGLQ---NKAWASDTSK-FGYKMLEKMGWKAGQGVGKDLQGQATHVTIVKRTDGLGIGCSLKQAEVTGWSSTSSNFADVLAALNKSY 98
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|953491783|emb|CEG45792.1| (pin2 terf1-interacting telomerase inhibitor 1 [Plasmopara halstedii]) HSP 1 Score: 79.337 bits (194), Expect = 9.032e-15 Identity = 45/107 (42.06%), Postives = 61/107 (57.01%), Query Frame = 0
Query: 4 RTENTAAVHLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETYKRQEVP 110
RT+N + VG MQ N W K FGFKM++KMGWS G+G+GK LQG ATHV VA++ ++ G+G + GW E + F VL+ LN +Y + P
Sbjct: 17 RTDNAGQTMVA--VGGMQ---NMAWASDTSK-FGFKMLVKMGWSAGKGVGKHLQGQATHVKVARRSENLGVGCSLKQAEVQGWAETAGGFADVLNALNNSYSCKTCP 117
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|673018192|ref|XP_008863057.1| (hypothetical protein H310_01651 [Aphanomyces invadans] >gi|574482260|gb|ETW09252.1| hypothetical protein H310_01651 [Aphanomyces invadans]) HSP 1 Score: 77.7962 bits (190), Expect = 2.630e-14 Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 0
Query: 12 HLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETY 104
H+ +G +Q N+ W K FG+KM+ KMGW GQG+GK+LQG ATHVT+ K+ + G+G + GW+ S+ F VL+ LN++Y
Sbjct: 10 HVMVKLGGLQ---NKAWASDTSK-FGYKMLEKMGWKAGQGVGKDLQGQATHVTIVKRTEGLGIGCSLKQAEVTGWSSTSSNFADVLAALNKSY 98
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|301107422|ref|XP_002902793.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097911|gb|EEY55963.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 77.411 bits (189), Expect = 3.643e-14 Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 0
Query: 17 VGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETY 104
VG MQ N W K FGFKM++KMGWS G+G+GKELQG ATHV +A++ ++ G+G + GW++ + F VL LN++Y
Sbjct: 25 VGGMQ---NMAWASDTSK-FGFKMLVKMGWSAGKGVGKELQGQATHVKIARRSENLGVGCSLKQAEVQGWSQTAGGFADVLKTLNKSY 108
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|301091254|ref|XP_002895816.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262096593|gb|EEY54645.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 77.411 bits (189), Expect = 3.643e-14 Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 0
Query: 17 VGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETY 104
VG MQ N W K FGFKM++KMGWS G+G+GKELQG ATHV +A++ ++ G+G + GW++ + F VL LN++Y
Sbjct: 25 VGGMQ---NMAWASDTSK-FGFKMLVKMGWSAGKGVGKELQGQATHVKIARRSENLGVGCSLKQAEVQGWSQTAGGFADVLKTLNKSY 108
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|1173942780|gb|OQR91726.1| (hypothetical protein ACHHYP_04449 [Achlya hypogyna]) HSP 1 Score: 77.411 bits (189), Expect = 4.137e-14 Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 0
Query: 12 HLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKL 100
H+ VG +Q N+ W K FG+KM+MKMGW G G+GK+LQG ATHVT+ K+ D+ GLG + GW+ S F VLS L
Sbjct: 10 HVMVQVGGLQ---NKAWAADTNK-FGYKMLMKMGWKAGSGVGKDLQGTATHVTIQKRSDNLGLGCSLKQAEVTGWSSTSGNFADVLSTL 94
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|813118830|ref|XP_012196075.1| (hypothetical protein SPRG_02134 [Saprolegnia parasitica CBS 223.65] >gi|641539517|gb|KDO33326.1| hypothetical protein SPRG_02134 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 76.6406 bits (187), Expect = 5.617e-14 Identity = 50/125 (40.00%), Postives = 70/125 (56.00%), Query Frame = 0
Query: 1 MAKRTENTAAVHLKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNE----TYKRQEVPLKR-KKKRARG 120
MA + E + V VG +Q N+ W K FG++M+MKMGW G+G+GK+LQG ATHVT+ K+ +S GLG ++ GW+ S F VLS L + T R+ + KR + K A G
Sbjct: 1 MATKVEESIMVQ----VGGLQ---NKAWAADTSK-FGYQMLMKMGWKAGKGVGKDLQGTATHVTIQKRSESLGLGCSLKQSEVTGWSSTSGNFADVLSNLKKKPTTTINRRILFSKRVRNKNASG 117
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|1173959955|gb|OQS06128.1| (RNA polymerase I-specific transcription initiation factor rrn3 [Thraustotheca clavata]) HSP 1 Score: 79.337 bits (194), Expect = 8.619e-14 Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 0
Query: 17 VGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKL 100
VG +Q N+ W K FG+KM+MKMGW G G+GK+LQG +THV V K+ D+ GLG + GW+ S F VLS L
Sbjct: 14 VGGLQ---NKAWASDTSK-FGYKMLMKMGWKAGAGIGKDLQGTSTHVVVQKRSDNLGLGCSLKQAEVTGWSSTSGNFADVLSSL 93
BLAST of EWM24268.1 vs. NCBI_GenBank
Match: gi|568026907|gb|ETM00878.1| (hypothetical protein L917_02456 [Phytophthora parasitica] >gi|970665541|gb|KUG02169.1| PIN2/TERF1-interacting telomerase inhibitor 1 [Phytophthora nicotianae]) HSP 1 Score: 76.2554 bits (186), Expect = 1.125e-13 Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 0
Query: 17 VGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETY 104
VG MQ N W K FGFKM++KMGWS G+G+GK+LQG ATHV +A++ ++ G+G + GW++ + F VL LN++Y
Sbjct: 25 VGGMQ---NMAWASDTSK-FGFKMLVKMGWSAGKGVGKDLQGQATHVKIARRSENLGVGCSLKQAEVQGWSQTAGGFADVLKTLNKSY 108 The following BLAST results are available for this feature:
BLAST of EWM24268.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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