rna6420, rna6420 (mRNA) Nannochloropsis gaditana

Overview
Namerna6420
Unique Namerna6420
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length888
Alignment locationCM002468.1:477520..477855 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100020g61.5416.mrna
Orig protein idgnl|cribi|Naga_100020g61.5416
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:477520..477855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100020g61gene6203Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6420rna6420-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24283.1cds6404Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6420 ID=rna6420|Name=rna6420|organism=Nannochloropsis gaditana|type=mRNA|length=888bp
ATGTGGAAGCAAGTCTTACTATTTGTGACACTGTTTAGCCAAGCTGCTGG
GTTTCTTCCGGGACATTCCAGGATCTCGGTCACGCGAAGCAGCATTAGGA
GCCGATATGCGCGAAAGGCTTTGGCAATGGAATTTGTCGATGTTATGCTC
CAAAAACCTATGGGGATTGTATTGGAAGAAAATGATCCGAAGCTGCAAGG
CGTGTATGTGAAAAGTTTGAGCCAAGGAGGAGCAGCGGCGGCAAGCGGTA
AGATCCAGGCAGGGGACCACCTTGTGTCCGTGCAAGGCGAAATGGTGACC
GGCAAGGACTTGGACGCCGTGCTTTCCACAGTGGGGAATGCCCCATCTGA
GAGTGTGCAAATGAGATTCTACCGGGGTGCTCTTGGTGACCTCATCAATC
CGCAAGTTTGGTTCGACATCGACATCGGGGGCGAGCGAGCAGGACGAATC
ACGTGCAGGCTGCGCAAGGATGTAGTACCCAAGACGGCTGAGAATTTTAG
AGCTCTGTGTACGGGTGAGAAGGGTTTTGGATACAAGAACTCCGCATTCC
ATCGTGTGATTCCAGGATTCATGTGCCAAGGTGGTGACTTCACGAGCGGG
GACGGGCGGGGTGGAAAATCCATTTACGGTGCGAAATTCGACGACGAAAA
TTTTGAGCTCACGCATGACGGCCCCGGCATCCTCTCGATGGCCAACGCGG
GACCCAATACAAATGGCTCGCAATTTTTCCTCTGCACTGTTGAGACCCCC
TGGCTCGATGGTAAGCACGTGGTGTTCGGACAGGTCACTGAGGGGCTGGA
CATCCTGAAGAAGATCGAGGCGGTAGGCAGCCAAGTGGGCAAGACCTCCG
TGCCCGTCATGATCGCCGACTGCGGCCAGCTTTCTTAA
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protein sequence of rna6420

>rna6420-protein ID=rna6420-protein|Name=rna6420|organism=Nannochloropsis gaditana|type=polypeptide|length=111bp
MEARATALYLLSMRGRASFQSVVRNKKISIFSRKKSVSFFLDVIDFRQRN
KNLRTKMINNYKDYIFHFLLHIALSAETPLSLIFHFFFSLSFSFFDLGPA
HSLAGRHDFPL
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mRNA from alignment at CM002468.1:477520..477855+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6420 ID=rna6420|Name=rna6420|organism=Nannochloropsis gaditana|type=mRNA|length=336bp|location=Sequence derived from alignment at CM002468.1:477520..477855+ (Nannochloropsis gaditana)
ATGGAAGCGCGCGCAACGGCATTGTATCTCCTTTCCATGAGAGGAAGAGC
CTCTTTTCAGAGCGTTGTGagaaacaaaaaaatatCTATCTTTTCTAGAA
AAAAATCcgtttccttttttttggATGTAATCGATTTCCGCCAGAGAAAT
AAAAATTTGCGTACAAAAATGATCAATAATTATAAAGATTAcatcttcca
ttttcttcttcacatTGCTTTGTCAGCCGAGACCCCGTTGTCGCTTATTT
TccactttttcttctccctctcattttctttctttgaccTGGGTCCCGCA
CATTCGCTTGCGGGCCGTCATGACTTTCCACTGTAA
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Coding sequence (CDS) from alignment at CM002468.1:477520..477855+

>rna6420 ID=rna6420|Name=rna6420|organism=Nannochloropsis gaditana|type=CDS|length=336bp|location=Sequence derived from alignment at CM002468.1:477520..477855+ (Nannochloropsis gaditana)
ATGGAAGCGCGCGCAACGGCATTGTATCTCCTTTCCATGAGAGGAAGAGC
CTCTTTTCAGAGCGTTGTGagaaacaaaaaaatatCTATCTTTTCTAGAA
AAAAATCcgtttccttttttttggATGTAATCGATTTCCGCCAGAGAAAT
AAAAATTTGCGTACAAAAATGATCAATAATTATAAAGATTAcatcttcca
ttttcttcttcacatTGCTTTGTCAGCCGAGACCCCGTTGTCGCTTATTT
TccactttttcttctccctctcattttctttctttgaccTGGGTCCCGCA
CATTCGCTTGCGGGCCGTCATGACTTTCCACTGTAA
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Synonyms
Publications