rna6419, rna6419 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6419
Unique Name	rna6419
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1626
Alignment location	CM002468.1:476110..477484 +

Link to JBrowse

Properties


Property Name	Value
Product	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain protein
Orig transcript id	gnl\|cribi\|Naga_100020g62.5350.mrna
Orig protein id	gnl\|cribi\|Naga_100020g62.5350
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:476110..477484 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g62	gene6202	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6419	rna6419-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24217.1	cds6403	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:476110..477484+
coding sequence from alignment at CM002468.1:476110..477484+

mRNA sequence

>rna6419 ID=rna6419|Name=rna6419|organism=Nannochloropsis gaditana|type=mRNA|length=1626bp
AGCCTCTCATGAAACGGGACACATATCACACAGGTCGCGCCCATGATGAA
ATCAACACGCTCAGTTAATAAGGATACCAATGAAATCAATAAAATGAATT
CATGTAAGGACGTCAAAGGAGCTGCTGCGAGCAGGAATATCCTGCAACAT
AGGTTAATAGGAACCAAAAAAAGCGAATGGGTCAAGAACTTGCACGGTAG
CCTGGCGATCATTGTGGTGGGGACCCTCGGTGCCCTTGCAAGTTATTTGG
CGGGCTATTTTTGGCGCAACGAGGCTGCAAAGCCTCTGGATTCCTACGAA
CGTATCCTCTCTACTGTATACCCGCATGATTCGGCTTTTCGAACCGAGCA
AAACTCTACGGTGTCGGGCCCATCCTTGGCTGGTTGCAGCATCTCTACCC
TATTCGCCGACGAGCCAGTGCACGGGATGCACCTGGGTTGCATCCAACAC
ACCCCAACAGGTTTATATGCCACCATGTTTATGGATGGCCAGAATCACAC
CAGAAGAGAAGTTATCGCTTCGATGAATGACTTCCAAGGTTTGCGCACAC
TGCTTGGAGACCGTCTAGGGTTAGCGCCTGTCGGTCGCCGCAATGGAGAA
GGCCCACGGGACAAAGAGACACCCAACACACAGAAGCCTTGGAGCATGTT
CTCGCCTCAAGGTATCGCCATTGACAGCCTGCTAGACCTACAGGAAGGAG
CCAACGATGTGCTGCTCTACGAGGGTGGAAGATTTATTTGGCCAGGTGTC
CGTGAAGGATACGTCACGCAGGTGACGGCGTTGGACCGCCTAGGGTCCGT
GAAGATGCAGACCCTCTCTATGTCACCTCTTGTCTTCTCTGTCGAGAATT
TCTTGCTTCCCGAGGAATGCACTTACATTCGGGATGTCGCTGAGCCCCAC
ATGCGACAGTCGGGGGTGAAGCTCATGGACCACGACAAGGGCAAGGCGGC
CACGGACTGGCGGACGAGCTCCACGCACTTCCTTGCTTCCAAGCACCATG
CCCGCATTCAATCAGTCGACCGCCGGGTGGCGGGACTCACTCGGCAGCCT
GTCTCGCACCAGGAAGACGTGCAAGTGTTGAGATACGAGTCCACGCAGCG
TTACGATGCCCACCATGATTTCTTCGACCGTCGCTTGTACGCGAGGGACC
CCGACACGCTCAAGCTCATCGATAATGGGAAAAGAAACCGTATGGCTACA
GTCCTTTGGTATTTGAGTGACGTATTGCAAGGCGGTGAAACGATATTTCC
TCTTCACAACGGCGGGGAAATCTCCTACGACAGCCGCCACTGCGAACGTA
TGAAGGGCGCGCTTCGCTGTCCACCGAAGGAAGGAAGCGTGATTATCTTC
TATTCCTTGCTCCCGAATGGCGATCTGGATGACCGCAGTCTTCATGGTTC
TTGCGCTGTTAAACATGGGGTCAAGTGGGCAGCCAACAAATGGATATGGA
GTGATGAAATCGCACCCATCCTGGGGCGTGCCTAGAAATTTGAATGTGAA
GCACAAGTGAACAGCCGTCCCTTCACATCTTGGATTGGTGGGACAATCAA
AGGCTGAAATTTAAGTCAACCTCGGCACACTTTTACGTTTTAATATTTAA
TTTTAATTTTAATACATGTCCTCACG

protein sequence of rna6419

>rna6419-protein ID=rna6419-protein|Name=rna6419|organism=Nannochloropsis gaditana|type=polypeptide|length=295bp
MWKQVLLFVTLFSQAAGFLPGHSRISVTRSSIRSRYARKALAMEFVDVML
QKPMGIVLEENDPKLQGVYVKSLSQGGAAAASGKIQAGDHLVSVQGEMVT
GKDLDAVLSTVGNAPSESVQMRFYRGALGDLINPQVWFDIDIGGERAGRI
TCRLRKDVVPKTAENFRALCTGEKGFGYKNSAFHRVIPGFMCQGGDFTSG
DGRGGKSIYGAKFDDENFELTHDGPGILSMANAGPNTNGSQFFLCTVETP
WLDGKHVVFGQVTEGLDILKKIEAVGSQVGKTSVPVMIADCGQLS

mRNA from alignment at CM002468.1:476110..477484+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6419 ID=rna6419|Name=rna6419|organism=Nannochloropsis gaditana|type=mRNA|length=1375bp|location=Sequence derived from alignment at CM002468.1:476110..477484+ (Nannochloropsis gaditana)
ATGTGGAAGCAAGTCTTACTATTTGTGACACTGTTTAGCCAAGCTGCTGG
GTTTCTTCCGGGACATTCCAGGTACGACGGAGAAGATCTGAGCGTAGCCT
TGCATCAAGTATGAGTGGAACACGAGACATGATGTATGCTTTGGCCGGTC
ACATTTTAATGTGCCCCGAATAGCGGGTAGAGAATCTTTCTTCAAGTGTC
GCCCCTTCGCCGTTGTTTTCGAGATGTGCTCATCACAGTAATTGTATCAC
TCCAAACCTGTGTGTGTCGCCTTGAACAGTCAGCATGCTATGTCGTTGTA
AATTGCCATCACATCTTCAATTCTAGCTAATCATGGCATTCAAGATGCTA
AGTTACTTGAGTCTTTGAAGGCTTTAACTCCTCTGGCTGGACCCACTCCC
TCATAATCTCGCAGGATCTCGGTCACGCGAAGCAGCATTAGGAGCCGATA
TGCGCGAAAGGCTTTGGCAATGGAATTTGTCGATGTTATGCTCCAAAAAC
CTATGGGGATTGtattggaagaaaatgatCCGAAGCTGCAAGGCGTGTAT
GTGAAAAGTTTgagccaaggaggagcagcggcggcaAGCGGTAAGATCCA
GGCAGGGGACCACCTTGTGTCCGTGCAAGGCGAAATGGTGACCGGCAAGG
ACTTGGACGCCGTGCTTTCCACAGTGGGGAATGCCCCATCTGAGAGTGTG
CAAATGAGATTCTACCGGGGTGCTCTTGGTGACCTCATCAATCCGCAAGT
TTGGTTCGACATCGACATCGGGGGCGAGCGAGCAGGACGAATCACGTGCA
GGCTGCGCAAGGATGTAGTACCCAAGACGGCTGGTACGTCTTCCATGAAA
ATTAATAGCTCGTTGGCCCCCTCTATCAAAATGCCTTTGCGACTCGCATA
TTCCATGTCATAGCGTATCCAACAACGTAAGTCACAAATTCTCTAATGGG
GCGTTCTTCTTCATTCCATCCTTTCAGAGAATTTTAGAGCTCTGTGTACG
GGTGAGAAGGGTTTTGGATACAAGAACTCCGCATTCCATCGTGTGATTCC
AGGATTCATGTGCCAAGGTGGTGACTTCACGAGCGGGGACGGGCGGGGTG
GAAAATCCATTTACGGTGCGAAATTCGACGACGAAAATTTTGAGCTCACG
CATGACGGCCCCGGCATCCTCTCGATGGCCAACGCGGGACCCAATACAAA
TGGCTCGCAATTTTTCCTCTGCACTGTTGAGACCCCCTGGCTCGATGGTA
AGCACGTGGTGTTCGGACAGGTCACTGAGGGGCTGGACATCCTGAAGAAG
ATCGAGGCGGTAGGCAGCCAAGTGGGCAAGACCTCCGTGCCCGTCATGAT
CGCCGACTGCGGCCAGCTTTCTTAA

Coding sequence (CDS) from alignment at CM002468.1:476110..477484+

>rna6419 ID=rna6419|Name=rna6419|organism=Nannochloropsis gaditana|type=CDS|length=2664bp|location=Sequence derived from alignment at CM002468.1:476110..477484+ (Nannochloropsis gaditana)
ATGTGGAAGCAAGTCTTACTATTTGTGACACTGTTTAGCCAAGCTGCTGG
GTTTCTTCCGGGACATTCCAGGATCTCGGTCACGCGAAGCAGCATTAGGA
GCCGATATGCGCGAAAGGCTTTGGCAATGGAATTTGTCGATGTTATGCTC
CAAAAACCTATGGGGATTGtattggaagaaaatgatCCGAAGCTGCAAGG
CGTGTATGTGAAAAGTTTgagccaaggaggagcagcggcggcaAGCGGTA
AGATCCAGGCAGGGGACCACCTTGTGTCCGTGCAAGGCGAAATGGTGACC
GGCAAGGACTTGGACGCCGTGCTTTCCACAGTGGGGAATGCCCCATCTGA
GAGTGTGCAAATGAGATTCTACCGGGGTGCTCTTGGTGACCTCATCAATC
CGCAAGTTTGGTTCGACATCGACATCGGGGGCGAGCGAGCAGGACGAATC
ACGTGCAGGCTGCGCAAGGATGTAGTACCCAAGACGGCTGAGAATTTTAG
AGCTCTGTGTACGGGTGAGAAGGGTTTTGGATACAAGAACTCCGCATTCC
ATCGTGTGATTCCAGGATTCATGTGCCAAGGTGGTGACTTCACGAGCGGG
GACGGGCGGGGTGGAAAATCCATTTACGGTGCGAAATTCGACGACGAAAA
TTTTGAGCTCACGCATGACGGCCCCGGCATCCTCTCGATGGCCAACGCGG
GACCCAATACAAATGGCTCGCAATTTTTCCTCTGCACTGTTGAGACCCCC
TGGCTCGATGGTAAGCACGTGGTGTTCGGACAGGTCACTGAGGGGCTGGA
CATCCTGAAGAAGATCGAGGCGGTAGGCAGCCAAGTGGGCAAGACCTCCG
TGCCCGTCATGATCGCCGACTGCGGCCAGCTTTCTTAAATGTGGAAGCAA
GTCTTACTATTTGTGACACTGTTTAGCCAAGCTGCTGGGTTTCTTCCGGG
ACATTCCAGGATCTCGGTCACGCGAAGCAGCATTAGGAGCCGATATGCGC
GAAAGGCTTTGGCAATGGAATTTGTCGATGTTATGCTCCAAAAACCTATG
GGGATTGtattggaagaaaatgatCCGAAGCTGCAAGGCGTGTATGTGAA
AAGTTTgagccaaggaggagcagcggcggcaAGCGGTAAGATCCAGGCAG
GGGACCACCTTGTGTCCGTGCAAGGCGAAATGGTGACCGGCAAGGACTTG
GACGCCGTGCTTTCCACAGTGGGGAATGCCCCATCTGAGAGTGTGCAAAT
GAGATTCTACCGGGGTGCTCTTGGTGACCTCATCAATCCGCAAGTTTGGT
TCGACATCGACATCGGGGGCGAGCGAGCAGGACGAATCACGTGCAGGCTG
CGCAAGGATGTAGTACCCAAGACGGCTGAGAATTTTAGAGCTCTGTGTAC
GGGTGAGAAGGGTTTTGGATACAAGAACTCCGCATTCCATCGTGTGATTC
CAGGATTCATGTGCCAAGGTGGTGACTTCACGAGCGGGGACGGGCGGGGT
GGAAAATCCATTTACGGTGCGAAATTCGACGACGAAAATTTTGAGCTCAC
GCATGACGGCCCCGGCATCCTCTCGATGGCCAACGCGGGACCCAATACAA
ATGGCTCGCAATTTTTCCTCTGCACTGTTGAGACCCCCTGGCTCGATGGT
AAGCACGTGGTGTTCGGACAGGTCACTGAGGGGCTGGACATCCTGAAGAA
GATCGAGGCGGTAGGCAGCCAAGTGGGCAAGACCTCCGTGCCCGTCATGA
TCGCCGACTGCGGCCAGCTTTCTTAAATGTGGAAGCAAGTCTTACTATTT
GTGACACTGTTTAGCCAAGCTGCTGGGTTTCTTCCGGGACATTCCAGGAT
CTCGGTCACGCGAAGCAGCATTAGGAGCCGATATGCGCGAAAGGCTTTGG
CAATGGAATTTGTCGATGTTATGCTCCAAAAACCTATGGGGATTGtattg
gaagaaaatgatCCGAAGCTGCAAGGCGTGTATGTGAAAAGTTTgagcca
aggaggagcagcggcggcaAGCGGTAAGATCCAGGCAGGGGACCACCTTG
TGTCCGTGCAAGGCGAAATGGTGACCGGCAAGGACTTGGACGCCGTGCTT
TCCACAGTGGGGAATGCCCCATCTGAGAGTGTGCAAATGAGATTCTACCG
GGGTGCTCTTGGTGACCTCATCAATCCGCAAGTTTGGTTCGACATCGACA
TCGGGGGCGAGCGAGCAGGACGAATCACGTGCAGGCTGCGCAAGGATGTA
GTACCCAAGACGGCTGAGAATTTTAGAGCTCTGTGTACGGGTGAGAAGGG
TTTTGGATACAAGAACTCCGCATTCCATCGTGTGATTCCAGGATTCATGT
GCCAAGGTGGTGACTTCACGAGCGGGGACGGGCGGGGTGGAAAATCCATT
TACGGTGCGAAATTCGACGACGAAAATTTTGAGCTCACGCATGACGGCCC
CGGCATCCTCTCGATGGCCAACGCGGGACCCAATACAAATGGCTCGCAAT
TTTTCCTCTGCACTGTTGAGACCCCCTGGCTCGATGGTAAGCACGTGGTG
TTCGGACAGGTCACTGAGGGGCTGGACATCCTGAAGAAGATCGAGGCGGT
AGGCAGCCAAGTGGGCAAGACCTCCGTGCCCGTCATGATCGCCGACTGCG
GCCAGCTTTCTTAA

Synonyms

Publications